Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052400.3.1
CDS Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

ATGGAAGTCTTCAAAAGCATTGCAAACACGACGAGTTCTTTCTTTGTTATATGCATTTTG
CTTCTCTTTGCAAATGCAGCATCTGAAAAAACTCACTACCATGATTTTGTTATTCAAGCA
ACACCAGTGAAGAGGCTGTGCAAAACTAGCAATGCCATAACGGTGAATGGACAATACCCT
GGACCAACATTAGAAGTTAACAACGGGGATACTCTGGTGGTTAACGTTGTTAATAAAGCT
CGATACAATGTTACTATTCACTGGCACGGGGTTAGGCAAATGAGAACAGCATGGGCAGAT
GGACCGGAATTTATCACTCAATGCCCGATTAGACCAGGAAAGAGTTACACTTACCGGTTT
ACAATTCAAGGACAAGAAGGGACACTTTGGTGGCACGCCCACAGCTCGTGGCTTAGGGCT
ACGGTTTATGGAGCTTTGATTATCCATCCAAAAGAAGGCGGAAACTATCCATTTCCTAAC
CCCAAAAGAGAAACACCAGTTCTGCTTGGTGAGTGGTGGAATACGAACCCTATTGACGTT
GTAAGACAAGCAACAAGAACAGGAGCAGCTCCTAATGTATCAGACGCTTATACTATCAAT
GGTCAGCCAGGTGATCTATACAAGTGTTCTAGACAAGATACCACCATAGTCCATATGGAC
TCTGGCGAAACTAACCTCCTTCGAGTTATCAATGCTGGATTGAACCAACAGCTTTTCTTT
ACTGTGGCAAACCACAAGCTTACTGTAGTTGGAGCAGATGCTAATTATGTTAAACCTTTC
ACAACATCAGTCCTTATGCTCGGACCAGGACAGACAACCGATGTCCTGATCAAAGCTGAT
CAGACGCCAAGCAGATACTACATGGCAGCACGTGCCTATGCAAGCGCTCAAGGCGCACCA
TTTGATAATACCACAGCCACAGCCATCCTCGAGTACAAGAAATCGTCTTGCTCTTCCAAT
TGTACCACAACTAATCCCATTTTCCCATTGTTACCAGCATATAACGACACAACCACTGCT
ACAGCCTTCACAACCAAATTCAGAAGCCCAAGAAAGGTTGAGGTCCCTACTGAAATCGAT
GAAAATCTATTCATCACAGTTGGGCTGGGACTCGAGAACTGCCCAACAGGTGCACCCTCC
AGTAACTGTCAAGGTCCAAATGGAACTCGATTCGCTGCCAGTATGAACAACATATCGTTT
GTGCTGCCATCCAATTTTTCCCTGCTACAAGCACATCACCAACGCATACCTGGTGTCTTC
TCAACGGACTTCCCATCTGTACCACCTGTAAAATTTAATTACACAGGCAACGTAAGCCGA
TCTTTATGGCAACCTATTCGAGGAACTAAGCTGTACAAACTGAAATATGGGGCAAAAGTG
CAAGTTGTGTTACAGGGGACAGGTATCTTCACAGCTGAAAATCATCCAATTCATCTTCAC
GGATACGATTTCTACATCATTGCTGAGGGTTTCGGTAACTTCAATCCAAAAACAGACACA
TCTAAATTCAACCTTATTAATCCACCTCTCAGAAATACAGCAAGTGTACCAGTTAACGGA
TGGACAGTCATCAGATTTATCGCGGACAATCCAGGAGTGTGGATAATGCATTGTCATTTG
GATGTTCACATTACATGGGGTTTGGCGATGGCGTTCCTCGTGGAAAATGGAGTTAGTGAG
CTCGAATCTTTGGAGGCTCCTCCCGTAGATTTTCCTGTCTGTTGA

Peptide Sequence

PEP ID

Solyc05g052400.3.1
PEP Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

MEVFKSIANTTSSFFVICILLLFANAASEKTHYHDFVIQATPVKRLCKTSNAITVNGQYP
GPTLEVNNGDTLVVNVVNKARYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGKSYTYRF
TIQGQEGTLWWHAHSSWLRATVYGALIIHPKEGGNYPFPNPKRETPVLLGEWWNTNPIDV
VRQATRTGAAPNVSDAYTINGQPGDLYKCSRQDTTIVHMDSGETNLLRVINAGLNQQLFF
TVANHKLTVVGADANYVKPFTTSVLMLGPGQTTDVLIKADQTPSRYYMAARAYASAQGAP
FDNTTATAILEYKKSSCSSNCTTTNPIFPLLPAYNDTTTATAFTTKFRSPRKVEVPTEID
ENLFITVGLGLENCPTGAPSSNCQGPNGTRFAASMNNISFVLPSNFSLLQAHHQRIPGVF
STDFPSVPPVKFNYTGNVSRSLWQPIRGTKLYKLKYGAKVQVVLQGTGIFTAENHPIHLH
GYDFYIIAEGFGNFNPKTDTSKFNLINPPLRNTASVPVNGWTVIRFIADNPGVWIMHCHL
DVHITWGLAMAFLVENGVSELESLEAPPVDFPVC*

Transcript Sequence

Transcript ID

Solyc05g052400.3.1
Transcript Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

TTTTTTTAAAAAAAGTGATTGTTTCACTAGTTTGGGTTGCACAGAAAAGTTCCCTCCAAT
TAGTGGTATATAATCATCAAAATTCACAACTAACTTCAATTTGTTGTGTAACAACACATC
ATTACTAATTTACTATTAAGCAAAAATCATAAAATGGTGTTTCCTTATAAATTCAAAAAT
ATAACAAACTCCTCCAAACAAAACTTATAATGTAAGCATTATTCATCAAAAATTTGTAGG
CTTAGTTTGGTGAACCAACTCCTACAGGATTTAACTAAATTTTGCCCTCTAATATAATCA
TAAGCAAAATCTAACCCTATAAAAGCAAAGCTTCAACTCTGCTATCTTTCACAAAACAAG
CTCTGACTTGCATCTCTACTAATACTCGAATCAAGTTTTTTTAAGGCAAGGAAAACAATG
GAAGTCTTCAAAAGCATTGCAAACACGACGAGTTCTTTCTTTGTTATATGCATTTTGCTT
CTCTTTGCAAATGCAGCATCTGAAAAAACTCACTACCATGATTTTGTTATTCAAGCAACA
CCAGTGAAGAGGCTGTGCAAAACTAGCAATGCCATAACGGTGAATGGACAATACCCTGGA
CCAACATTAGAAGTTAACAACGGGGATACTCTGGTGGTTAACGTTGTTAATAAAGCTCGA
TACAATGTTACTATTCACTGGCACGGGGTTAGGCAAATGAGAACAGCATGGGCAGATGGA
CCGGAATTTATCACTCAATGCCCGATTAGACCAGGAAAGAGTTACACTTACCGGTTTACA
ATTCAAGGACAAGAAGGGACACTTTGGTGGCACGCCCACAGCTCGTGGCTTAGGGCTACG
GTTTATGGAGCTTTGATTATCCATCCAAAAGAAGGCGGAAACTATCCATTTCCTAACCCC
AAAAGAGAAACACCAGTTCTGCTTGGTGAGTGGTGGAATACGAACCCTATTGACGTTGTA
AGACAAGCAACAAGAACAGGAGCAGCTCCTAATGTATCAGACGCTTATACTATCAATGGT
CAGCCAGGTGATCTATACAAGTGTTCTAGACAAGATACCACCATAGTCCATATGGACTCT
GGCGAAACTAACCTCCTTCGAGTTATCAATGCTGGATTGAACCAACAGCTTTTCTTTACT
GTGGCAAACCACAAGCTTACTGTAGTTGGAGCAGATGCTAATTATGTTAAACCTTTCACA
ACATCAGTCCTTATGCTCGGACCAGGACAGACAACCGATGTCCTGATCAAAGCTGATCAG
ACGCCAAGCAGATACTACATGGCAGCACGTGCCTATGCAAGCGCTCAAGGCGCACCATTT
GATAATACCACAGCCACAGCCATCCTCGAGTACAAGAAATCGTCTTGCTCTTCCAATTGT
ACCACAACTAATCCCATTTTCCCATTGTTACCAGCATATAACGACACAACCACTGCTACA
GCCTTCACAACCAAATTCAGAAGCCCAAGAAAGGTTGAGGTCCCTACTGAAATCGATGAA
AATCTATTCATCACAGTTGGGCTGGGACTCGAGAACTGCCCAACAGGTGCACCCTCCAGT
AACTGTCAAGGTCCAAATGGAACTCGATTCGCTGCCAGTATGAACAACATATCGTTTGTG
CTGCCATCCAATTTTTCCCTGCTACAAGCACATCACCAACGCATACCTGGTGTCTTCTCA
ACGGACTTCCCATCTGTACCACCTGTAAAATTTAATTACACAGGCAACGTAAGCCGATCT
TTATGGCAACCTATTCGAGGAACTAAGCTGTACAAACTGAAATATGGGGCAAAAGTGCAA
GTTGTGTTACAGGGGACAGGTATCTTCACAGCTGAAAATCATCCAATTCATCTTCACGGA
TACGATTTCTACATCATTGCTGAGGGTTTCGGTAACTTCAATCCAAAAACAGACACATCT
AAATTCAACCTTATTAATCCACCTCTCAGAAATACAGCAAGTGTACCAGTTAACGGATGG
ACAGTCATCAGATTTATCGCGGACAATCCAGGAGTGTGGATAATGCATTGTCATTTGGAT
GTTCACATTACATGGGGTTTGGCGATGGCGTTCCTCGTGGAAAATGGAGTTAGTGAGCTC
GAATCTTTGGAGGCTCCTCCCGTAGATTTTCCTGTCTGTTGACGATTGCAAGAAGCAACA
ACAAACAAGAATTAATTTGAGTTTTTAACTAAACTTGAATCTCGCATTGCTATAATTAGT
TTAGCCTTTGGGTATATAGGAAACAATATTGCAATGTGTCCAACTTCATCAATACTATTC
CCATTGGTGTTACCTTTGCGTTTTGCAATATATGAAATCTATTTTGTTCAATGTAAAAGT
ACGATCGTGAGGATATATACAATCTTAAAGTATAACTGAAGATGTA