Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052390.3.1
CDS Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

ATGAAGCCCTTCAACCCTTTAAGTTCTTTATGTTTTGTATGCATTTTGCTTCTCTTTGCA
AATGCAGAGTCTGCGAAAACTCATTACCATGATTTTGTGGTTCAAGCAACACTAGTAAAG
AGGCTGTGTGAAATCCACAACATCATAACGGTGAATGGGAAATTCCCTGGACCGACATTG
GAAGTAAACAACGGGGATACTCTGGTGGTTAACGTTGTGAATAGAGCTCGATATAATGTT
ACTATTCACTGGCATGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTT
ATCACTCAGTGCCCGATTAGACCAGGAAAGAGTTACACTTACCGGTTTACTATTCAAGGA
CAAGAAGGGACTCTTTGGTGGCACGCCCACAGCTCGTGGCTTAGGGCTACTGTTTATGGA
GCTTTAATTATCAATCCAAAAGAAGGAGTAATCTATCCATTTCCAAAGCCCAAAAGAGAA
ACACCAATTCTGCTCGGTGAGTGGTGGAATACGAACCCTATTGACGTTGTAAGACAAGCA
ACAAGAACAGGAGCAGCTCCTAATATATCTGATGCATACACCATCAATTCTCAACCAGGT
GACCTCTACAAGTGTTCTAGTCAAGATACCGCCATAGTTCATATGGACTCTGGTGAAATC
AACCTCCTTCGAGTTATCAACGCTGCCCTGAACCAGCAGCTTTTCTTTGCTGTGGCCAAT
CACAAACTTACTGTCGTTGGAGCAGATGCCACTTATGTTAAACCCTTCACAACATCAGTC
CTTATGCTCGGACCAGGCCAGACAACTGATGTCCTGATCAAAGCTGATCAACAACCCGCT
CGATATTACATGGCAGCACGTGCCTATGCTAGTGCTCAAGACGCCCCTTTTGATGATACC
ACAACCACAGCCATCCTCGAGTACAACACAGCTTCTTGTTCTACGAATTGTGTCAAGACC
AAACCGGTTTTCCCATCTTTACCAGCATATAATGACACATCCACTGCCACAACTTTCTCA
ACCAAATTCAGAAGCCCAAGAAGGGTCGAGGTTCCCAAGGAAATCGATGAAAATCTGTTC
TTCACAGTTGGGCTGGGACTCGAGAACTGCCCAAGAGGTGCACCCTCCAGTTACTGTCAA
GGTCCAAGTGGAACTCGATTCACTGCGAGTATGAACAATGTATCTTTTACGCTACCATCC
AATAATTCCCTGCTACAAGCACATTACCAAGGCATATCTGGTGTTTTCTCAACTGATTTC
CCAGCTGTACCACCTGTAAAATTTGATTATACTGGAAACGTAAGCGGGTCTTTATGGCAA
CCTATTCGAGGAACTAAGCTGTACAAACTGAAATATGGAGCAAAAGTGCAAGTTGTGTTA
CAGGGGACTAGTATCTTTTCAGCTGAAAACCATCCAATGCATCTTCACGGATATGATTTC
TACATCATTGCAGAAGGTTTCGGTAACTTCAATCCAAAAACAGACACATTTAAATTCAAC
CTTATTGATCCACCTCTTAGAAATACAGCAAGTGTACCCGTTAACGGATGGACAGTCATT
AGATTTATCGCGAACAATCCAGGAGTGTGGCTAATGCACTGTCATTTGGATGTTCACATT
ACATGGGGTTTAGCCATGGCGTTCCTCGTGGAAAACGGAGTTTGTGAATCAGAATCATTG
GAACCTCCTCCACTAGATTTGCCTGTCTGTTGA

Peptide Sequence

PEP ID

Solyc05g052390.3.1
PEP Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

MKPFNPLSSLCFVCILLLFANAESAKTHYHDFVVQATLVKRLCEIHNIITVNGKFPGPTL
EVNNGDTLVVNVVNRARYNVTIHWHGVRQMRTGWADGPEFITQCPIRPGKSYTYRFTIQG
QEGTLWWHAHSSWLRATVYGALIINPKEGVIYPFPKPKRETPILLGEWWNTNPIDVVRQA
TRTGAAPNISDAYTINSQPGDLYKCSSQDTAIVHMDSGEINLLRVINAALNQQLFFAVAN
HKLTVVGADATYVKPFTTSVLMLGPGQTTDVLIKADQQPARYYMAARAYASAQDAPFDDT
TTTAILEYNTASCSTNCVKTKPVFPSLPAYNDTSTATTFSTKFRSPRRVEVPKEIDENLF
FTVGLGLENCPRGAPSSYCQGPSGTRFTASMNNVSFTLPSNNSLLQAHYQGISGVFSTDF
PAVPPVKFDYTGNVSGSLWQPIRGTKLYKLKYGAKVQVVLQGTSIFSAENHPMHLHGYDF
YIIAEGFGNFNPKTDTFKFNLIDPPLRNTASVPVNGWTVIRFIANNPGVWLMHCHLDVHI
TWGLAMAFLVENGVCESESLEPPPLDLPVC*

Transcript Sequence

Transcript ID

Solyc05g052390.3.1
Transcript Infomation

Laccase (AHRD V3.3 *** B9HSI6_POPTR)
Sequence

GCAACTTAGAACAGCATCTTGCTGTATAACATCACATTGCTAATGTGAAGCAAAATCTAA
TTAGTTAAGTAGTTATAGTGCATGGCATTGTTCATGAAAATTGCTGATGTTAGATAAGCT
AAGTTAAGTGGATGAATCAATCAGTTCTACAGAGTTTTACCAAGTTTTTTTTTGGTAACA
TAATCTGTCAACCTTACACAACTTTTATCTATAAAAGTAGATCCCTCAACTCTAATATCT
TTCACAAACAAACACTTACTTCCATTTCTATTAATACTCGAATCGAGTTTTAGTAAAAAA
AAAAGAAAAAGAAATGAAGCCCTTCAACCCTTTAAGTTCTTTATGTTTTGTATGCATTTT
GCTTCTCTTTGCAAATGCAGAGTCTGCGAAAACTCATTACCATGATTTTGTGGTTCAAGC
AACACTAGTAAAGAGGCTGTGTGAAATCCACAACATCATAACGGTGAATGGGAAATTCCC
TGGACCGACATTGGAAGTAAACAACGGGGATACTCTGGTGGTTAACGTTGTGAATAGAGC
TCGATATAATGTTACTATTCACTGGCATGGTGTTAGGCAAATGAGAACAGGATGGGCAGA
TGGACCAGAATTTATCACTCAGTGCCCGATTAGACCAGGAAAGAGTTACACTTACCGGTT
TACTATTCAAGGACAAGAAGGGACTCTTTGGTGGCACGCCCACAGCTCGTGGCTTAGGGC
TACTGTTTATGGAGCTTTAATTATCAATCCAAAAGAAGGAGTAATCTATCCATTTCCAAA
GCCCAAAAGAGAAACACCAATTCTGCTCGGTGAGTGGTGGAATACGAACCCTATTGACGT
TGTAAGACAAGCAACAAGAACAGGAGCAGCTCCTAATATATCTGATGCATACACCATCAA
TTCTCAACCAGGTGACCTCTACAAGTGTTCTAGTCAAGATACCGCCATAGTTCATATGGA
CTCTGGTGAAATCAACCTCCTTCGAGTTATCAACGCTGCCCTGAACCAGCAGCTTTTCTT
TGCTGTGGCCAATCACAAACTTACTGTCGTTGGAGCAGATGCCACTTATGTTAAACCCTT
CACAACATCAGTCCTTATGCTCGGACCAGGCCAGACAACTGATGTCCTGATCAAAGCTGA
TCAACAACCCGCTCGATATTACATGGCAGCACGTGCCTATGCTAGTGCTCAAGACGCCCC
TTTTGATGATACCACAACCACAGCCATCCTCGAGTACAACACAGCTTCTTGTTCTACGAA
TTGTGTCAAGACCAAACCGGTTTTCCCATCTTTACCAGCATATAATGACACATCCACTGC
CACAACTTTCTCAACCAAATTCAGAAGCCCAAGAAGGGTCGAGGTTCCCAAGGAAATCGA
TGAAAATCTGTTCTTCACAGTTGGGCTGGGACTCGAGAACTGCCCAAGAGGTGCACCCTC
CAGTTACTGTCAAGGTCCAAGTGGAACTCGATTCACTGCGAGTATGAACAATGTATCTTT
TACGCTACCATCCAATAATTCCCTGCTACAAGCACATTACCAAGGCATATCTGGTGTTTT
CTCAACTGATTTCCCAGCTGTACCACCTGTAAAATTTGATTATACTGGAAACGTAAGCGG
GTCTTTATGGCAACCTATTCGAGGAACTAAGCTGTACAAACTGAAATATGGAGCAAAAGT
GCAAGTTGTGTTACAGGGGACTAGTATCTTTTCAGCTGAAAACCATCCAATGCATCTTCA
CGGATATGATTTCTACATCATTGCAGAAGGTTTCGGTAACTTCAATCCAAAAACAGACAC
ATTTAAATTCAACCTTATTGATCCACCTCTTAGAAATACAGCAAGTGTACCCGTTAACGG
ATGGACAGTCATTAGATTTATCGCGAACAATCCAGGAGTGTGGCTAATGCACTGTCATTT
GGATGTTCACATTACATGGGGTTTAGCCATGGCGTTCCTCGTGGAAAACGGAGTTTGTGA
ATCAGAATCATTGGAACCTCCTCCACTAGATTTGCCTGTCTGTTGACGACTGCGAAAAGC
AGCACAAAAGAAGTTCACCTTTTGCATTTTGATAGATAGTGTTCAAGAGGCGGATAATCA
ATCCGCGTTCAAGCCCAGAATACCCCCAAATTACATCAATTGTATTGTAATTTAGTTCAT
ATACCAAAAAAACGTATTCAGCACTCATAGCGGAGGTAAGATTTTGAGTTTATAGGTTTT
GAATCCTAGAAAACACATCTTAATAGGTTTTTCCATAAATCAATAGTTATACATATTATA
CATCTTGTTTGGATGGTTACGTGTTCTACTGTATTGTAAGTTTAAATACAAT