Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052220.3.1
CDS Infomation

U-box protein (AHRD V3.3 *-* A0A072V2F3_MEDTR)
Sequence

ATGGCTTCTGAAGAAATGGGACTTGTTTCAGCTCGAAGGGTGGAGAATGGGCTTAATTCA
CAGCTAGTTTTCCATGAAAGCAATTTCAGCTGCGGCGCACCACCACCAGCACAACCTCCG
GGTGGGGTTGGGTCTGTTACAGGTGATCCAGGTCCAAAAACTACAAGGGAGCTTACCGGA
TTCAATCATCAACATCAGTACTTTCTTAATCAACATCAACCACAAGCTGCTGATTTTCGC
CGTCAAATGTTCGGTGACGACCGTGGTGATGGTGATTGGAATAGGAAGAGCCATGGAGAT
GGCGATGGTGATGGATCGGAGGATGAGGATATGGATGACGATGACGATGATGATGATGAT
GAGAATGAAGTGGAGGGGATTGTTACAGTTGAAAATAGTGATCATCAGAATAATAATAGT
GATAAAGTTAATAGTAATAGTAGTGGTAAAGTAGTTGGCAGTGATAAAACGAGAAGTGTT
TCTACATTTGGTGTGAAGGAAGGGAATGTTGGGCCGTCGGGAAATGAAGGTGGTGTCGAC
GTGAGAAATGCTGTGATAATTGCTAGTGTTGATGGGGATATGTATTATAATCAGTATTTG
CAGGGACCGGAAGGGTCAAATGCAGCACAGAAGGAAATGGGGTTTGAGAATGGGTGTGGA
TTTAGTGGGAGAAAGGAAGCTCATTATTCAAATGAATCAGGAGAGTCATTGAGAACTATT
CTTTCCGATCCTATTACGGGAGAGCTTATGGATGATGCAATGATATTGCCTTGTGGGCAT
TCCTTTGGTAGCGGTGGGGTTCAGCATGTAATTAGAATGAAAGTTTGCTATATCTGTTCA
CAAGCGGTGTCCGAAGACTCACTGTCACCTAATTTATCTCTTCGATCTGCAATTCAAGCA
TTCCGCCGAGAAGAGGAGTCACATCTTAATCGCTCTTTAAAAAGAAGAAAGGAGAGATAT
GATCAGGATAGAGGGACCTTTGGTGATTCAGCACTTCCTGATCATCTAAGAGGAAGAGGA
GTTCAGTTTCCATTCGCTGTGACAGACAGGGTTATAATAAAGGGCAACAAAAGGACACCT
GAGCGTTTTGTGGGTCGTGAGGCTGTTGTTACAACTCAGTGCTTGAATGGATGGTATGTT
GTAAAGACATTAGATAATGCTGAGAGTGTAAAGTTGCAATACCGCTCCCTAGCCAAGGTT
CCTGAGAATTTATCAATCCAGCCAATATCAAGTAAGGTGGCAGCCTGGCTGTAG

Peptide Sequence

PEP ID

Solyc05g052220.3.1
PEP Infomation

U-box protein (AHRD V3.3 *-* A0A072V2F3_MEDTR)
Sequence

MASEEMGLVSARRVENGLNSQLVFHESNFSCGAPPPAQPPGGVGSVTGDPGPKTTRELTG
FNHQHQYFLNQHQPQAADFRRQMFGDDRGDGDWNRKSHGDGDGDGSEDEDMDDDDDDDDD
ENEVEGIVTVENSDHQNNNSDKVNSNSSGKVVGSDKTRSVSTFGVKEGNVGPSGNEGGVD
VRNAVIIASVDGDMYYNQYLQGPEGSNAAQKEMGFENGCGFSGRKEAHYSNESGESLRTI
LSDPITGELMDDAMILPCGHSFGSGGVQHVIRMKVCYICSQAVSEDSLSPNLSLRSAIQA
FRREEESHLNRSLKRRKERYDQDRGTFGDSALPDHLRGRGVQFPFAVTDRVIIKGNKRTP
ERFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPENLSIQPISSKVAAWL*

Transcript Sequence

Transcript ID

Solyc05g052220.3.1
Transcript Infomation

U-box protein (AHRD V3.3 *-* A0A072V2F3_MEDTR)
Sequence

ATGGCTTCTGAAGAAATGGGACTTGTTTCAGCTCGAAGGGTGGAGAATGGGCTTAATTCA
CAGCTAGTTTTCCATGAAAGCAATTTCAGCTGCGGCGCACCACCACCAGCACAACCTCCG
GGTGGGGTTGGGTCTGTTACAGGTGATCCAGGTCCAAAAACTACAAGGGAGCTTACCGGA
TTCAATCATCAACATCAGTACTTTCTTAATCAACATCAACCACAAGCTGCTGATTTTCGC
CGTCAAATGTTCGGTGACGACCGTGGTGATGGTGATTGGAATAGGAAGAGCCATGGAGAT
GGCGATGGTGATGGATCGGAGGATGAGGATATGGATGACGATGACGATGATGATGATGAT
GAGAATGAAGTGGAGGGGATTGTTACAGTTGAAAATAGTGATCATCAGAATAATAATAGT
GATAAAGTTAATAGTAATAGTAGTGGTAAAGTAGTTGGCAGTGATAAAACGAGAAGTGTT
TCTACATTTGGTGTGAAGGAAGGGAATGTTGGGCCGTCGGGAAATGAAGGTGGTGTCGAC
GTGAGAAATGCTGTGATAATTGCTAGTGTTGATGGGGATATGTATTATAATCAGTATTTG
CAGGGACCGGAAGGGTCAAATGCAGCACAGAAGGAAATGGGGTTTGAGAATGGGTGTGGA
TTTAGTGGGAGAAAGGAAGCTCATTATTCAAATGAATCAGGAGAGTCATTGAGAACTATT
CTTTCCGATCCTATTACGGGAGAGCTTATGGATGATGCAATGATATTGCCTTGTGGGCAT
TCCTTTGGTAGCGGTGGGGTTCAGCATGTAATTAGAATGAAAGTTTGCTATATCTGTTCA
CAAGCGGTGTCCGAAGACTCACTGTCACCTAATTTATCTCTTCGATCTGCAATTCAAGCA
TTCCGCCGAGAAGAGGAGTCACATCTTAATCGCTCTTTAAAAAGAAGAAAGGAGAGATAT
GATCAGGATAGAGGGACCTTTGGTGATTCAGCACTTCCTGATCATCTAAGAGGAAGAGGA
GTTCAGTTTCCATTCGCTGTGACAGACAGGGTTATAATAAAGGGCAACAAAAGGACACCT
GAGCGTTTTGTGGGTCGTGAGGCTGTTGTTACAACTCAGTGCTTGAATGGATGGTATGTT
GTAAAGACATTAGATAATGCTGAGAGTGTAAAGTTGCAATACCGCTCCCTAGCCAAGGTT
CCTGAGAATTTATCAATCCAGCCAATATCAAGTAAGGTGGCAGCCTGGCTGTAGAGTTCC
ATCCAGCAGAACGATTATGACTCTCTCGTCCTAACTTATTGCACATACTCCATGTTTGAT
ACATATAGTCTTACTACAACAAGCATTGTGTTTTTTTCAGTCCTATTCTAGATCCTGTAT
CCGTTCAACGTGATTCTCAGGCTTAGGTGTTGTACATTGTATAGATTGTTTTGTAGCACT
ACAGCGTTGAGATGAGATCCCGAGATATGAACTATACAGAGCCACAGTTGATTAAAATAA
ATGAATTATACAGATTCATTTCTGCTGAGTTTTGTA