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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052110.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4C1P2_SOLLC)
Sequence

ATGGCTGGAAAAAATACCATATTTGTTGTGGAAACAATTATCATAACATTTCTTTTATTA
AATATTATTGAAGTATTTTCTGATGATTTAGTTCCAATTCCAGCTGATAAATCACAATTA
AATAGTTGGTTTGAAGCTAATGTTAAGCCATTAGATGCAAGAAAAGACACTTTAGACCCT
GCCCTTGTAGCTGCTGAGGCTAATAAAACTATCATTAAGGTTAGGACATATGGAAGTGGT
GATTTCAAGACTATAACAGAAGCTGTCAAAAGTATTCCAGAAGGGAATAAAAAAAGAGTT
ATTATTTGGATTGGAAGTGGAAATTACACTGAAAAAATTAAAATTGAGAGAACAAAGCCT
TTTGTTACATTATATGGAGACCCTAAAAATGTTCCAAATATTATATTCCATGGAACTGCA
CAAGAATATACTACTGTTGACAGTGCCACTGTCATTGTTGAATCTGAATATTTCAGTGCT
GTCAATATCAATTTCGTGAATACAGCACCAAGACCAGATGGGAAAAGTGACAAAGCTCAA
GCAGCAGCATTGAGGACAGGAGGAGATAAAGCCTCGTTGTATAATTGTAAAATGTTTGGA
TTTCAAGACACTTTTTGTGATGATAGTGGAAAACATTTCTTTAAAGATTGTTATATTGAA
GGCACTGTTGATTTCATCTTTGGAAATGGCAAATCCTTGTATCTGAATACAGAGACACAT
GTAATTCCAGGGGATCCAATGGCAATGGTGACAGCACAAGCAAGGGCAGTAGAAAATTTT
GACAGTGGATTTTCTTTTGTACATTGTATGATTACTGGTACTGGAAATACAGCATATTTA
GGAAGGGCATGGAAACAATACTCTAAAGTTGTTTTCTCATATACTGATATGACTGATGTT
ATTCACCCTGAAGGATGGTCTGATTTTGGCAAAAAAGAATTTGGCAGCACGGTATACTAT
GGAGAATACAAGTGCAAAGGAGCAGGAGCAACTTTGGATAAAAGAGTTCCATTTACAAAG
AAATTAACTGATGAAGAGGCAAAACCTTTTATTTCCCTGGCTTATATTGAAGGCTCTAAG
TGGCTACTTCCTCCTGTGACACTTTAA

Peptide Sequence

PEP ID

Solyc05g052110.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4C1P2_SOLLC)
Sequence

MAGKNTIFVVETIIITFLLLNIIEVFSDDLVPIPADKSQLNSWFEANVKPLDARKDTLDP
ALVAAEANKTIIKVRTYGSGDFKTITEAVKSIPEGNKKRVIIWIGSGNYTEKIKIERTKP
FVTLYGDPKNVPNIIFHGTAQEYTTVDSATVIVESEYFSAVNINFVNTAPRPDGKSDKAQ
AAALRTGGDKASLYNCKMFGFQDTFCDDSGKHFFKDCYIEGTVDFIFGNGKSLYLNTETH
VIPGDPMAMVTAQARAVENFDSGFSFVHCMITGTGNTAYLGRAWKQYSKVVFSYTDMTDV
IHPEGWSDFGKKEFGSTVYYGEYKCKGAGATLDKRVPFTKKLTDEEAKPFISLAYIEGSK
WLLPPVTL*

Transcript Sequence

Transcript ID

Solyc05g052110.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4C1P2_SOLLC)
Sequence

ATGGCTGGAAAAAATACCATATTTGTTGTGGAAACAATTATCATAACATTTCTTTTATTA
AATATTATTGAAGTATTTTCTGATGATTTAGTTCCAATTCCAGCTGATAAATCACAATTA
AATAGTTGGTTTGAAGCTAATGTTAAGCCATTAGATGCAAGAAAAGACACTTTAGACCCT
GCCCTTGTAGCTGCTGAGGCTAATAAAACTATCATTAAGGTTAGGACATATGGAAGTGGT
GATTTCAAGACTATAACAGAAGCTGTCAAAAGTATTCCAGAAGGGAATAAAAAAAGAGTT
ATTATTTGGATTGGAAGTGGAAATTACACTGAAAAAATTAAAATTGAGAGAACAAAGCCT
TTTGTTACATTATATGGAGACCCTAAAAATGTTCCAAATATTATATTCCATGGAACTGCA
CAAGAATATACTACTGTTGACAGTGCCACTGTCATTGTTGAATCTGAATATTTCAGTGCT
GTCAATATCAATTTCGTGAATACAGCACCAAGACCAGATGGGAAAAGTGACAAAGCTCAA
GCAGCAGCATTGAGGACAGGAGGAGATAAAGCCTCGTTGTATAATTGTAAAATGTTTGGA
TTTCAAGACACTTTTTGTGATGATAGTGGAAAACATTTCTTTAAAGATTGTTATATTGAA
GGCACTGTTGATTTCATCTTTGGAAATGGCAAATCCTTGTATCTGAATACAGAGACACAT
GTAATTCCAGGGGATCCAATGGCAATGGTGACAGCACAAGCAAGGGCAGTAGAAAATTTT
GACAGTGGATTTTCTTTTGTACATTGTATGATTACTGGTACTGGAAATACAGCATATTTA
GGAAGGGCATGGAAACAATACTCTAAAGTTGTTTTCTCATATACTGATATGACTGATGTT
ATTCACCCTGAAGGATGGTCTGATTTTGGCAAAAAAGAATTTGGCAGCACGGTATACTAT
GGAGAATACAAGTGCAAAGGAGCAGGAGCAACTTTGGATAAAAGAGTTCCATTTACAAAG
AAATTAACTGATGAAGAGGCAAAACCTTTTATTTCCCTGGCTTATATTGAAGGCTCTAAG
TGGCTACTTCCTCCTGTGACACTTTAA