Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g051680.3.1
CDS Infomation	Structural maintenance of chromosomes family protein (AHRD V3.3 *** D7M0L2_ARALL)
Sequence	ATGGCGGATAGGGTTCCGACTGGGAGACCGAAGCGTTTACAAGCTGGTATTATTTCGAAA ATTCGATTGGAAAATTTCATGTGCCATAGTAATCTCGAGATTGATTTCGGTGATTGGGTT AATTTCATTACTGGACAGAACGGGAGTGGGAAAAGCGCTATACTGACAGCATTATGTGTG GCTTTTGGGAGCCGTGCTAGAGGCACACAAAGGGCCAATTCACTAAAGGATTTTATAAAG ACTGGCTGCAGCCATGCCCTTGTTCACGTGGAAATGAAAAACCGAGGAGAGGATGCTTTC AAGGGTGAAACTTATGGTGACCTCATAATGATAGAGCGCAGGATTTCAGAGTCTTCTAGT TCTATCGTACTAAAGAATTACCAAGGTAAAAAGGTGGCTTCCAAAAGAGAGGAACTCCAA GAGCTTATAGTACATTTTAATATTGACGTGGAAAATCCATGTGTAATAATGAGTCAAGAC AAAAGCAGGGAGTTCTTACATTCAGGAAATTCAAAGGACAAGTTCAAGTTCTTTTTCAAG GCAACACTACTTCAGCAAGTGGAAGATCTTCTGATTGGTATCCAGAGTCAATTGAAAAAT GCAAATGAATTAGTTGCTGAACTGGAGAAATCGATAAATCCTATAGAGAAAGAACTTGAT GAATTGCAAGGAAAGATTAGAAGCATGGAGCATATAGAGGAGATATCTAATCAGGTAGAC CTGTTGAAGAAGAAATTGGCATGGGCATGGGTCTACAGTGTAGATAAGCAGTTACAAGAT AAAATCAAACGGATCGAGGAGCTGAAAGGACGGATTCCCACTTGTCAATCTCGAATTGAT CAGCATCTTAGGAAGATGGAGGAATTGAATGATCAGTTAACCAAGAAAAAAGCTCAAATT GCTCATATGATGGAAAAGACATCAGAAGTGAGGAAGATGACAGACGAGTTGAAGCAGAGT CTTTCTTTGGCTACAAAGGAAAAACTTGAGCTGGAAGAGGAGCGGGGTCGTAAATCTAAT TACATTCAAAAGATGGCAAAACGGGTCAAGATGTTTGAACAACAAATACGTGATATGGAT GAGCAGAATATTAGAAATACACAGGCTGAAGAGCTTGACATGGAGGTGAAACTGAAGGAG TTCCAAGCTGAGATTGACAGTGCCAATGTTGTATTTCAAAGGTTGAGGAATGAAGAAGAT AACCTAATAGATAAAATTAATCAGGCGAAGGATCAGATAAACAAAATTGTTCATGAGATT GAAGAGAATGACAAGAGGGATCGTGACATTCGCTCTCGCATTCGTGAGTTGCAACTTCAT CAAAGTAACAAGGTTACGGCCTTTGGAGGAGGCAGAGTGATGGGCCTCTTGGAGGTAATT GAAAGACAACATAGAAAGTTCAACAGGGCGCCGATCGGTCCAATAGGTGCTCATGTGAGC TTGGTTGATGGTGACAAGTGGGGTACTGCTATTGAATGTGCCGTTGGCAAGGTGCTTAAT GCTTTTATTGTAAATGATCATAAAGATTCCCTTTTATTAAGAGCATGTGCAAGGGAAGCG AACTACAATCACTTACAGATTATCATTTATGAGTTCTCTAGACCAAGGTTGCATATTCCC GATCACATGCTTCCCCAGACTCATCATCCAACAGCAATTTCTGTTCTACGTTCAGACAAT CCTACCGTACTAAATGTCTTGATTGATGTGGGTAGTGCTGAGAGGCAAGTTCTAGTTAAA GACTATGATGCTGGAAAAACAGTTGCTTTTGATCAAAGGATATCAAATTTAAAAGAGGTT TACACTTCTGATGGTTACAAAATGTTTTCTCGGGGTTCTGTCCAAACTACTCTTCCACCC ATGAAGAATATGAGAGGTGGGCGTCTTTCTGGTTCATATGATGATAAAATTAAAACTCTA GAAAGCGAAGCATTTGAGGCACAGAACAAAGCTCGACAAAGCAAGGGTATGAAGAGGAGT ATCAATGAGGAGCTTCAAGGACTCCATGATAATCTGCAAAGCGCTAAGAGGAGGCGCCAC GATGCAGAGCGAGTTTTGAGGTCCAAGGAGTTTAGCTTGCAAGATTTTAAAAAGTCATAT GTTGCAGAATCTAGCTCCACCGCTGTATCAACAGTAGATGAACTTCATGTTGAGCTATCG TTCTATTTTCTTGAAAACAATGTACAGAAAGTCCGTGATGAGATGCATGAAGGAGAAAAT TTATTGGAAAAGCTTCAACTGAGGTTGAAAGAAGCGGACAACAAAGCTAATGAGGTCAAA ATTTCCTTTGAAAATTTGTGTGAATCAGCAAAAGTGGAAATTGGTGCATTGGAGGAAGCA GAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTGAAGAAGAATCAC TATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTAT CAGGAACTTGAGCACAACCGTAGGGAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAA AGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCAT TTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGACATCCAGAGTCCATTGAG GACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTAC AAAGCATTTCGTGAGAAATTAGGTGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAA TTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCAT TTACATATCCATATTATATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATC AAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAGGTAAAAATGCCCCAAGATGCATCA AGCAGCAGTGTTCGTGACACACGAGGACTTTCAGGGGGAGAACGCTCTTTTTCAACTTTG TGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTT GATGTATTTATGGATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCA TTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAGAAGGATGGATCAT GCACTTGCTAAACATACTAATAAGTTTGTCTCTGCTCAATTTTGCAATTTATCTTTTAAG TCTGTAAGTATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGT TCTTGA

Peptide Sequence

PEP ID	Solyc05g051680.3.1
PEP Infomation	Structural maintenance of chromosomes family protein (AHRD V3.3 *** D7M0L2_ARALL)
Sequence	MADRVPTGRPKRLQAGIISKIRLENFMCHSNLEIDFGDWVNFITGQNGSGKSAILTALCV AFGSRARGTQRANSLKDFIKTGCSHALVHVEMKNRGEDAFKGETYGDLIMIERRISESSS SIVLKNYQGKKVASKREELQELIVHFNIDVENPCVIMSQDKSREFLHSGNSKDKFKFFFK ATLLQQVEDLLIGIQSQLKNANELVAELEKSINPIEKELDELQGKIRSMEHIEEISNQVD LLKKKLAWAWVYSVDKQLQDKIKRIEELKGRIPTCQSRIDQHLRKMEELNDQLTKKKAQI AHMMEKTSEVRKMTDELKQSLSLATKEKLELEEERGRKSNYIQKMAKRVKMFEQQIRDMD EQNIRNTQAEELDMEVKLKEFQAEIDSANVVFQRLRNEEDNLIDKINQAKDQINKIVHEI EENDKRDRDIRSRIRELQLHQSNKVTAFGGGRVMGLLEVIERQHRKFNRAPIGPIGAHVS LVDGDKWGTAIECAVGKVLNAFIVNDHKDSLLLRACAREANYNHLQIIIYEFSRPRLHIP DHMLPQTHHPTAISVLRSDNPTVLNVLIDVGSAERQVLVKDYDAGKTVAFDQRISNLKEV YTSDGYKMFSRGSVQTTLPPMKNMRGGRLSGSYDDKIKTLESEAFEAQNKARQSKGMKRS INEELQGLHDNLQSAKRRRHDAERVLRSKEFSLQDFKKSYVAESSSTAVSTVDELHVELS FYFLENNVQKVRDEMHEGENLLEKLQLRLKEADNKANEVKISFENLCESAKVEIGALEEA ERELMMIDKDLKDAELKKNHYEGVMSTKVLSQLTGAEAEYQELEHNRRESYKKASIICPE SEIEALGGCDGSTPEQLSAHLARLSQRLQQESRRHPESIEDLRMLYNKKERKILRKQQTY KAFREKLGACHKALELRWSKFQRNATLLKRQLTWQYDLYHLHIHIIFNGHLGKKGISGHI KVCYEEKTLSIEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEF DVFMDAVSRKISLDAVVDFALAQGSQWIFITPHDIRRMDHALAKHTNKFVSAQFCNLSFK SVSMVKQDERVKKQQMAAPRS*

Transcript Sequence

Transcript ID	Solyc05g051680.3.1
Transcript Infomation	Structural maintenance of chromosomes family protein (AHRD V3.3 *** D7M0L2_ARALL)
Sequence	ACAATATTTGTCCTTCGAGTGACTTATCTTCATATAGCCACAAGTTTTAAGGGACTTATC TTCCTTTCCATCGAGAGAACTTTTCTTCATTTTATTATATACTGTATTTAAAAATAATAA ATTCATTAGCTAATTAGCTTTGTTTATACAATAATATTTTATTTAATTTAGTTATAAGTA ATGTAAACATTAGTTATATATTTTGTTTGGTATAAATGAAAAATCATGTTATTAATAATA TAAAAGATTTAATGTATGTGTTGTTTCAAAAAGACAATTATCGGTTAAAATTTTTTCATA TTTTTTTCATCGCATTTATAGAGATATTATTATAAACAAATATTATTTTAAAAAATATGC AAATGCATGTTATTTGTAAAACAGAAAATCAATAAATTAAATAAAAATAATGATAATATA ACTAATATAAACATTACTGATTCATTATATTATTATATTTAATCCTATTCTTACAATTAA GATAGCTTGATATACAAATAGATTATTTTGATATTGTAATCTCTGTATAAATATAAAATA ATTCCAAATCAAATGAGGCAAGTGGAGTATTACACGATTAAATTTGATATTAAATCTATA CAATATTTAATCGATTGTATAAATGTAATGCAAGAGAAGTTTATACCGCCAATCAAATAT AATATAAATCTAGTTAAAAAAATATCTCAATTTATCGCGCATAATAAACTAACTCCTTAA ACTACATCCAAACATGCCTTTCCCGCCATCTGTTCCCTAGTAGACCCTAAACACCTAGAC CTTGGCGCTACCAAAGAGAGAGAGATATTTTGTACAATTGTACTTCGTTGCCGTCAGTTC AATCTCCGGTTGAATCGGCGAGTGAGAATCCTCAAGTAACCGGAGAAAATGGCGGATAGG GTTCCGACTGGGAGACCGAAGCGTTTACAAGCTGGTATTATTTCGAAAATTCGATTGGAA AATTTCATGTGCCATAGTAATCTCGAGATTGATTTCGGTGATTGGGTTAATTTCATTACT GGACAGAACGGGAGTGGGAAAAGCGCTATACTGACAGCATTATGTGTGGCTTTTGGGAGC CGTGCTAGAGGCACACAAAGGGCCAATTCACTAAAGGATTTTATAAAGACTGGCTGCAGC CATGCCCTTGTTCACGTGGAAATGAAAAACCGAGGAGAGGATGCTTTCAAGGGTGAAACT TATGGTGACCTCATAATGATAGAGCGCAGGATTTCAGAGTCTTCTAGTTCTATCGTACTA AAGAATTACCAAGGTAAAAAGGTGGCTTCCAAAAGAGAGGAACTCCAAGAGCTTATAGTA CATTTTAATATTGACGTGGAAAATCCATGTGTAATAATGAGTCAAGACAAAAGCAGGGAG TTCTTACATTCAGGAAATTCAAAGGACAAGTTCAAGTTCTTTTTCAAGGCAACACTACTT CAGCAAGTGGAAGATCTTCTGATTGGTATCCAGAGTCAATTGAAAAATGCAAATGAATTA GTTGCTGAACTGGAGAAATCGATAAATCCTATAGAGAAAGAACTTGATGAATTGCAAGGA AAGATTAGAAGCATGGAGCATATAGAGGAGATATCTAATCAGGTAGACCTGTTGAAGAAG AAATTGGCATGGGCATGGGTCTACAGTGTAGATAAGCAGTTACAAGATAAAATCAAACGG ATCGAGGAGCTGAAAGGACGGATTCCCACTTGTCAATCTCGAATTGATCAGCATCTTAGG AAGATGGAGGAATTGAATGATCAGTTAACCAAGAAAAAAGCTCAAATTGCTCATATGATG GAAAAGACATCAGAAGTGAGGAAGATGACAGACGAGTTGAAGCAGAGTCTTTCTTTGGCT ACAAAGGAAAAACTTGAGCTGGAAGAGGAGCGGGGTCGTAAATCTAATTACATTCAAAAG ATGGCAAAACGGGTCAAGATGTTTGAACAACAAATACGTGATATGGATGAGCAGAATATT AGAAATACACAGGCTGAAGAGCTTGACATGGAGGTGAAACTGAAGGAGTTCCAAGCTGAG ATTGACAGTGCCAATGTTGTATTTCAAAGGTTGAGGAATGAAGAAGATAACCTAATAGAT AAAATTAATCAGGCGAAGGATCAGATAAACAAAATTGTTCATGAGATTGAAGAGAATGAC AAGAGGGATCGTGACATTCGCTCTCGCATTCGTGAGTTGCAACTTCATCAAAGTAACAAG GTTACGGCCTTTGGAGGAGGCAGAGTGATGGGCCTCTTGGAGGTAATTGAAAGACAACAT AGAAAGTTCAACAGGGCGCCGATCGGTCCAATAGGTGCTCATGTGAGCTTGGTTGATGGT GACAAGTGGGGTACTGCTATTGAATGTGCCGTTGGCAAGGTGCTTAATGCTTTTATTGTA AATGATCATAAAGATTCCCTTTTATTAAGAGCATGTGCAAGGGAAGCGAACTACAATCAC TTACAGATTATCATTTATGAGTTCTCTAGACCAAGGTTGCATATTCCCGATCACATGCTT CCCCAGACTCATCATCCAACAGCAATTTCTGTTCTACGTTCAGACAATCCTACCGTACTA AATGTCTTGATTGATGTGGGTAGTGCTGAGAGGCAAGTTCTAGTTAAAGACTATGATGCT GGAAAAACAGTTGCTTTTGATCAAAGGATATCAAATTTAAAAGAGGTTTACACTTCTGAT GGTTACAAAATGTTTTCTCGGGGTTCTGTCCAAACTACTCTTCCACCCATGAAGAATATG AGAGGTGGGCGTCTTTCTGGTTCATATGATGATAAAATTAAAACTCTAGAAAGCGAAGCA TTTGAGGCACAGAACAAAGCTCGACAAAGCAAGGGTATGAAGAGGAGTATCAATGAGGAG CTTCAAGGACTCCATGATAATCTGCAAAGCGCTAAGAGGAGGCGCCACGATGCAGAGCGA GTTTTGAGGTCCAAGGAGTTTAGCTTGCAAGATTTTAAAAAGTCATATGTTGCAGAATCT AGCTCCACCGCTGTATCAACAGTAGATGAACTTCATGTTGAGCTATCGTTCTATTTTCTT GAAAACAATGTACAGAAAGTCCGTGATGAGATGCATGAAGGAGAAAATTTATTGGAAAAG CTTCAACTGAGGTTGAAAGAAGCGGACAACAAAGCTAATGAGGTCAAAATTTCCTTTGAA AATTTGTGTGAATCAGCAAAAGTGGAAATTGGTGCATTGGAGGAAGCAGAACGTGAGCTA ATGATGATTGATAAAGATTTAAAAGATGCAGAACTGAAGAAGAATCACTATGAAGGTGTA ATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAG CACAACCGTAGGGAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAG GCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTA AGTCAAAGACTTCAGCAAGAGAGTCGGAGACATCCAGAGTCCATTGAGGACCTCCGCATG TTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGT GAGAAATTAGGTGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAAT GCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCAT ATTATATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTAT GAAGAGAAGACTCTTTCAATAGAGGTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTT CGTGACACACGAGGACTTTCAGGGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTT GCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGA TCACAGTGGATATTTATTACCCCTCATGACATCAGAAGGATGGATCATGCACTTGCTAAA CATACTAATAAGTTTGTCTCTGCTCAATTTTGCAATTTATCTTTTAAGTCTGTAAGTATG GTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTT TTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATG AAGTAGGTTTTTGGTAGGGTTTC