Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g050980.3.1
CDS Infomation

3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V3.3 *** K4C1D0_SOLLC)
Sequence

ATGGCACAGATTAGCAAAATGACACAGGGGATACAAACCCTTTATCCCAATTCCAAGATT
CATAAACCCCAAGTTCCCACATTTCTCCCTTCACTTCCTTTTGGATCTAAAAACCTGAAA
AAATCAGTAAAATGTTTGTGGGTTTTGAATAAAGATTCAGTTTTGACAACAAGGTCTTGT
TCTTCTTCTTTTAGGATTTCAGCATCAGTGGCTACAACCCAGAAACCTTCTGAGATTGTG
CTGCAACCCATCAAAGAAATATCAGGCACTGTCAAATTGCCAGGCTCTAAATCTCTATCC
AATCGTATCCTCCTTCTGGCTGCTCTATCTGAAGGAACAACTGTGGTTGACAATTTGCTA
AGTAGTGATGATATTCATTACATGCTTGGTGCGTTGAAAACACTTGGACTGCAAGTAGAA
GATGACAGTGGAAACCAACAAGCTGTTGTTGAAGGTTGTGGTGGTTTGTTCCCTGCCGCT
AAAGAGTCCAAGGAAGAGATTCAACTTTTCCTTGGAAATGCAGGAACTGCAATGCGGCCA
CTAACAGCAGCAGTTGCTGTAGCTGGCGGAAATTCAAGGTATGTACTTGATGGAGTTCCT
CGAATGAGAGAGAGACCAATTAGTGATTTGGTTGATGGTCTTAAGCAGCTTGGTGCAGAG
GTTGATTGTTTCCTTGGTACGAAATGTCCTCCTGTTCGAATTGTCAGCAAGGGAGGTCTC
CCAGGAGGGAAGGTGAAGCTGTCTGGATCCATTAGCAGCCAATACTTGACTGCTCTGCTT
ATGGCTGCTCCACTGGCTTTAGGAGATGTGGAGATTGAAATCATTGACAAACTAATATCT
GTACCTTATGTCGAAATGACTTTGAAGTTGATGGAGCGATTTGGTATATCTGTGGAGCAC
AATAGTAGCTGGGACAGGTTCTTTGTCCGAGGAGGTCAGAAATACAAGTCTCCTGGAAAA
GCTTATGTGGAAGGTGATGCTTCAAGTGCTAGTTACTTCTTGGCTGGTGCAGCTGTCACA
GGTGGAACCATCACTGTTGAAGGTTGTGGAACAAACAGTTTACAGGGGGATGTCAAATTT
GCTGAGGTTCTTGAGAAAATGGGAGCAGAAGTTACATGGACAGAGAATAGCGTCACAGTT
AAAGGACCTCCAAGGAATTCTTCTGGAAGGAAGCATTTGCATGCCATTGATGTGAACATG
AATAAAATGCCTGATGTCGCCATGACACTTGCTGTAGTTGCACTTTTTGCTGACGGTCCC
ACTGCTATAAGAGACGTTGCTAGTTGGAGAGTCAAGGAAACTGAGCGCATGATCGCCATA
TGCACAGAACTTAGGAAGTTGGGAGCAACTGTTGAAGAAGGACCTGACTACTGCATAATC
ACCCCACCGGAGAAATTAAATGTGACCGAAATTGATACATATGACGATCACAGGATGGCC
ATGGCCTTTTCTCTTGCTGCTTGTGCAGATGTTCCAGTCACCATCAATGACCCTGGCTGC
ACGCGGAAAACCTTCCCAAACTACTTTGATGTCCTTCAGCAGTACTCCAAGCATTGA

Peptide Sequence

PEP ID

Solyc05g050980.3.1
PEP Infomation

3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V3.3 *** K4C1D0_SOLLC)
Sequence

MAQISKMTQGIQTLYPNSKIHKPQVPTFLPSLPFGSKNLKKSVKCLWVLNKDSVLTTRSC
SSSFRISASVATTQKPSEIVLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLL
SSDDIHYMLGALKTLGLQVEDDSGNQQAVVEGCGGLFPAAKESKEEIQLFLGNAGTAMRP
LTAAVAVAGGNSRYVLDGVPRMRERPISDLVDGLKQLGAEVDCFLGTKCPPVRIVSKGGL
PGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISVEH
NSSWDRFFVRGGQKYKSPGKAYVEGDASSASYFLAGAAVTGGTITVEGCGTNSLQGDVKF
AEVLEKMGAEVTWTENSVTVKGPPRNSSGRKHLHAIDVNMNKMPDVAMTLAVVALFADGP
TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPEKLNVTEIDTYDDHRMA
MAFSLAACADVPVTINDPGCTRKTFPNYFDVLQQYSKH*

Transcript Sequence

Transcript ID

Solyc05g050980.3.1
Transcript Infomation

3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V3.3 *** K4C1D0_SOLLC)
Sequence

ACAGATAAAGATTTGTTGTGAGGGACCTCATACAAACCCCATTACTTTTCAGTATACTTA
TCACCTTCCACCTTAAAACAAATTTCTGTGATAAAAAAGTTATCTTTTGCAAAAGACTCA
AACTTTAGCTCTCAATACCAAAGACAGACACACAGGAAGAGCCGAAAAAATGGCACAGAT
TAGCAAAATGACACAGGGGATACAAACCCTTTATCCCAATTCCAAGATTCATAAACCCCA
AGTTCCCACATTTCTCCCTTCACTTCCTTTTGGATCTAAAAACCTGAAAAAATCAGTAAA
ATGTTTGTGGGTTTTGAATAAAGATTCAGTTTTGACAACAAGGTCTTGTTCTTCTTCTTT
TAGGATTTCAGCATCAGTGGCTACAACCCAGAAACCTTCTGAGATTGTGCTGCAACCCAT
CAAAGAAATATCAGGCACTGTCAAATTGCCAGGCTCTAAATCTCTATCCAATCGTATCCT
CCTTCTGGCTGCTCTATCTGAAGGAACAACTGTGGTTGACAATTTGCTAAGTAGTGATGA
TATTCATTACATGCTTGGTGCGTTGAAAACACTTGGACTGCAAGTAGAAGATGACAGTGG
AAACCAACAAGCTGTTGTTGAAGGTTGTGGTGGTTTGTTCCCTGCCGCTAAAGAGTCCAA
GGAAGAGATTCAACTTTTCCTTGGAAATGCAGGAACTGCAATGCGGCCACTAACAGCAGC
AGTTGCTGTAGCTGGCGGAAATTCAAGGTATGTACTTGATGGAGTTCCTCGAATGAGAGA
GAGACCAATTAGTGATTTGGTTGATGGTCTTAAGCAGCTTGGTGCAGAGGTTGATTGTTT
CCTTGGTACGAAATGTCCTCCTGTTCGAATTGTCAGCAAGGGAGGTCTCCCAGGAGGGAA
GGTGAAGCTGTCTGGATCCATTAGCAGCCAATACTTGACTGCTCTGCTTATGGCTGCTCC
ACTGGCTTTAGGAGATGTGGAGATTGAAATCATTGACAAACTAATATCTGTACCTTATGT
CGAAATGACTTTGAAGTTGATGGAGCGATTTGGTATATCTGTGGAGCACAATAGTAGCTG
GGACAGGTTCTTTGTCCGAGGAGGTCAGAAATACAAGTCTCCTGGAAAAGCTTATGTGGA
AGGTGATGCTTCAAGTGCTAGTTACTTCTTGGCTGGTGCAGCTGTCACAGGTGGAACCAT
CACTGTTGAAGGTTGTGGAACAAACAGTTTACAGGGGGATGTCAAATTTGCTGAGGTTCT
TGAGAAAATGGGAGCAGAAGTTACATGGACAGAGAATAGCGTCACAGTTAAAGGACCTCC
AAGGAATTCTTCTGGAAGGAAGCATTTGCATGCCATTGATGTGAACATGAATAAAATGCC
TGATGTCGCCATGACACTTGCTGTAGTTGCACTTTTTGCTGACGGTCCCACTGCTATAAG
AGACGTTGCTAGTTGGAGAGTCAAGGAAACTGAGCGCATGATCGCCATATGCACAGAACT
TAGGAAGTTGGGAGCAACTGTTGAAGAAGGACCTGACTACTGCATAATCACCCCACCGGA
GAAATTAAATGTGACCGAAATTGATACATATGACGATCACAGGATGGCCATGGCCTTTTC
TCTTGCTGCTTGTGCAGATGTTCCAGTCACCATCAATGACCCTGGCTGCACGCGGAAAAC
CTTCCCAAACTACTTTGATGTCCTTCAGCAGTACTCCAAGCATTGAAGCCACTTCAATAT
GTAGTAGAGTGTAAGTAAAAACATGTGAAAGAATTTAGTTCTTGTACAACAAGACAGGCT
ATTGCTGGTATCTGAACAACACAATGACTTTGACTTATTTAATTATTTGCCATGTGATCA
TGTTCAGTGTATTTGTTGAAGTTGAGCTGTTTATTTTTTTGTTTTTGAAGGAATGTATAC
TGTAACAGAGTTGAGAATTTTCCTTGTATGAGCAAATGTAAGGAGTACTAGTTCTATCAT
CTAATTTTATTGATTGAATTTTGTGAATG