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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g049900.3.1
CDS Infomation

Bestrophin/UPF0187 (AHRD V3.3 *** A0A103XUR8_CYNCS)
Sequence

ATGACAAATCCAAGAACCCTCTTCACCATTCAATCTCCAACAAATGCATCTTTTTCTTCC
CATTTTACCCTCAAGAATCCTTCAAAATCACAACAACAACCACCAGTCTATAAGAAGCTC
AATTTTAGAGTTCTTTGTTCCTCTCAACCTTCAAGAACCCCACAGAATTCAAATCTAATT
TCTACCCTTGTCAAGATTTTACGCGTAGTACCGGATTGGGCTGACAAAATTCAAGAAGGG
GGTATGAGAAAAAAGAGATCTTTATACAAGCATGAGACTTGGGTGCAACACAGAAGTTCA
TTAAGGCATGTTAGGCATTTGTTTTCGAGCTTCAATTCGCGAGTTGTTTTGTCGTTGATA
CCTCCTGTAATAGCTTTTACTTCATTTGCATTTGTGATTGCTAGTTATAATTCAGCAGTT
TCATTTCATTGGTTGCCTGAGTTTTTCCCTATCTTGAGAGCTAGTCCACAGCCTTATCAG
TTGACAGCTCCAGCTCTGGCACTTCTATTGGTGTTTAGGACGGAGGCGTCTTACTCGAGG
TTCGAAGCAGGGAAGAAGGCTTGGACTAAAGTCATTGCTGGAACTAATGATTTTGCTAGG
CAGGTCATTGCTTGTGTTGATAAGAGGGATGATGTGCTCAAAGAGGCACTTTTGCAGTAT
ATCATGGCATTTCCAGTTGCCTTAAAGTGCCACATAGTATATGACTCGGATATAGCAAGT
GATCTCAAAAACTTACTTGAGGCTGATGATCTAGCAGTAGTTCTCAGTTCTAAGCATCGC
CCTCGTTGTATAATTGGATTCATCGCTCAGAGCCTTCAGTCGTTAAACTTGGAGGGGACA
ATACTGAGTCAGCTGGAGTCAAAGATTTCTTGTTTCCATGAAGGTATTGGTGTATGTGAA
CAACTCTTGGGCATACCTATTCCCCTTTCGTACACTCGATTGACGTCAAGGTTCTTAGTC
CTTTGGCATCTAACTCTTCCTATAATACTTTGGGATGATTGCCACTGGATTGTGGTTCCA
GCTACTTTCATAAGTGCGGCTTCCTTATTCTGCATCGAAGAGGTTGGTGTCCTTATCGAG
GAGCCATTTCCAATGCTTGCACTCGATGAGCTATGTCAGCGTGTTCACGACAACATCCAC
GAAGCAATGGCAAACGAAAAGCAGATTCAAGAAATAGTAAACAGCAAAAGAAAAAGAAGT
TTTAGTGAACACTCTCCAAATGGTTGGCCAACATCATAG

Peptide Sequence

PEP ID

Solyc05g049900.3.1
PEP Infomation

Bestrophin/UPF0187 (AHRD V3.3 *** A0A103XUR8_CYNCS)
Sequence

MTNPRTLFTIQSPTNASFSSHFTLKNPSKSQQQPPVYKKLNFRVLCSSQPSRTPQNSNLI
STLVKILRVVPDWADKIQEGGMRKKRSLYKHETWVQHRSSLRHVRHLFSSFNSRVVLSLI
PPVIAFTSFAFVIASYNSAVSFHWLPEFFPILRASPQPYQLTAPALALLLVFRTEASYSR
FEAGKKAWTKVIAGTNDFARQVIACVDKRDDVLKEALLQYIMAFPVALKCHIVYDSDIAS
DLKNLLEADDLAVVLSSKHRPRCIIGFIAQSLQSLNLEGTILSQLESKISCFHEGIGVCE
QLLGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEVGVLIE
EPFPMLALDELCQRVHDNIHEAMANEKQIQEIVNSKRKRSFSEHSPNGWPTS*

Transcript Sequence

Transcript ID

Solyc05g049900.3.1
Transcript Infomation

Bestrophin/UPF0187 (AHRD V3.3 *** A0A103XUR8_CYNCS)
Sequence

TTTATTTATTTTTATTTCTAAGTGTAAAAAAAGGAGATTCACAAATTAACTGTTCCAACC
ACCTAATCCACTATGATTTTTGCACTCTTCACTTCACTTGTTTCAAACATCTGTCTCCCA
TGTTGTCACCTTCCTCCAAACCCTAACCCTAATTCTCATCAATGACAAATCCAAGAACCC
TCTTCACCATTCAATCTCCAACAAATGCATCTTTTTCTTCCCATTTTACCCTCAAGAATC
CTTCAAAATCACAACAACAACCACCAGTCTATAAGAAGCTCAATTTTAGAGTTCTTTGTT
CCTCTCAACCTTCAAGAACCCCACAGAATTCAAATCTAATTTCTACCCTTGTCAAGATTT
TACGCGTAGTACCGGATTGGGCTGACAAAATTCAAGAAGGGGGTATGAGAAAAAAGAGAT
CTTTATACAAGCATGAGACTTGGGTGCAACACAGAAGTTCATTAAGGCATGTTAGGCATT
TGTTTTCGAGCTTCAATTCGCGAGTTGTTTTGTCGTTGATACCTCCTGTAATAGCTTTTA
CTTCATTTGCATTTGTGATTGCTAGTTATAATTCAGCAGTTTCATTTCATTGGTTGCCTG
AGTTTTTCCCTATCTTGAGAGCTAGTCCACAGCCTTATCAGTTGACAGCTCCAGCTCTGG
CACTTCTATTGGTGTTTAGGACGGAGGCGTCTTACTCGAGGTTCGAAGCAGGGAAGAAGG
CTTGGACTAAAGTCATTGCTGGAACTAATGATTTTGCTAGGCAGGTCATTGCTTGTGTTG
ATAAGAGGGATGATGTGCTCAAAGAGGCACTTTTGCAGTATATCATGGCATTTCCAGTTG
CCTTAAAGTGCCACATAGTATATGACTCGGATATAGCAAGTGATCTCAAAAACTTACTTG
AGGCTGATGATCTAGCAGTAGTTCTCAGTTCTAAGCATCGCCCTCGTTGTATAATTGGAT
TCATCGCTCAGAGCCTTCAGTCGTTAAACTTGGAGGGGACAATACTGAGTCAGCTGGAGT
CAAAGATTTCTTGTTTCCATGAAGGTATTGGTGTATGTGAACAACTCTTGGGCATACCTA
TTCCCCTTTCGTACACTCGATTGACGTCAAGGTTCTTAGTCCTTTGGCATCTAACTCTTC
CTATAATACTTTGGGATGATTGCCACTGGATTGTGGTTCCAGCTACTTTCATAAGTGCGG
CTTCCTTATTCTGCATCGAAGAGGTTGGTGTCCTTATCGAGGAGCCATTTCCAATGCTTG
CACTCGATGAGCTATGTCAGCGTGTTCACGACAACATCCACGAAGCAATGGCAAACGAAA
AGCAGATTCAAGAAATAGTAAACAGCAAAAGAAAAAGAAGTTTTAGTGAACACTCTCCAA
ATGGTTGGCCAACATCATAGGATTGACTAGAAATTACGTCTTAAAAACGAAAGACTGAAG
TCTTCTCTATCATGACTTCAGCAACTGTACATAAAGAGGGAATGTCCCATATATGAATGT
TGTTTCAATGTCTGGGAAAACAAAGGGAAGACATATTTCTATTACCATATATGTAAATAT
ATAGTTCTGGTGGAAAGTATTCGTTCTAGAAAAGTATAACGCGTTGAGTTCAGCTTCTAA
ATTCAGTGACTGTATAATTTTGTCTTACAGAATGTGCTCTCAAATGTACAATGTGTGTAC
AATCTCATGAGAAGGATGAAA