Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g025510.3.1
CDS Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

ATGGGACGTGCAGAGGATGATGAACCACCACCAAAACGTGTGAAGGTATCCTCCAGAAAG
GGAGATCTTCCAAAGAGTACACTTCTGACTGATCCTGCAAGTTGCTCACTGAATGACTTG
ATGGCTCACCCCCTGGTTCGTCAAGGGGACGATGAGGTCGTTGGTGCAAAAGGGGTTGTT
AAGAAAGTTGAATTTGTGCGAATCGTAGCAGAGGCATTATATTCTCTTGGTTATAACAAA
GCTGGTGCACGTCTAGAAGAAGAGTCTGGGATTCCTTTGCAATCTGCTGAAGTAAAGTTA
CTTATGCAGCAAATCCTTGATGGTAAATGGGATGAAAGTGTTGCCACTTTACATAAAATT
GGTCTAATAGATGAAAAAATTGTTAAATTGGCATCATTTGAGATATTGGAACAGAAGTTT
TTTGAACTGTTGGATGGAAAAAATGTCATGGATGCTTTGAAGACATTGAGGACTGAGCTT
GGACCTCTTTGCGTAAACAATGATAGAGTCCGTGAGCTTTCTTTGTGCATTCTATCACCT
TTACAGCAGGTTCTTGCTGGGATGTCAGGTCAAGATGTTGTGCGACCAAAGTCACGAACA
AAACTCCTAGAGGAATTGCAGAAATTGCTTCCACCCGCGGTCATAATTCGTGAACAAAGA
TTGGTACATCTCGTCGAACAGGCTCTTGACTTGCAACTAGATGCTTGTAGGTTTCACAAC
TCGTTGGTAGGTGAGATGTCTTTGCTTACTGATCATCAGTGCGGAAGAGATCAAATTCCA
TCTCAAACTTTGCAGATATTACAAGATCACGGTGATGAAGTATGGTTCTTACAGTTCTCC
CACGGTGGAAAATACTTGGCCTCGTCAGCTGCTGATTGTTTGGTGATCATATGGGAGGTG
AAATTGGATGGTTTTTTCTGTGTGAAGCACCGGTTTTCTGGACACCAGAAACCTGTCTCC
AATATTTCATGGAGTCCTGATGACCATCAACTCCTTACTTGTGGGGTAGAGGAAGTTGTC
AGACGATGGGATGTTGAATCAGGTGAATGTATACATATTTATGAGAAAAATGGTCTTGGT
TTGATCTCGTGTGGATGGGCTCCTGATGGGAACAGGATATTATGCGGTGTTACAGACAAA
AGCATTAGCATGTGGGATCTGGAAGGGAAAGAGTTGGAGTGTTGGAAAGGCCATCGGACT
ATTAGAATATCAGACTTGGGGATAACTAGTGACGGGAAGCATGTAGTCTCTGTTTGTAAA
GATAATATGATACTATTATTTGGATGGGAATCAAAAGCAGAGAAAGTTATTCAGGAGGAT
CAAACAGTAACATCATTTGTACTGTCCACAGACAATAAGTATTTATTGGTTAGCCTTTGG
AATCAAGAAATTCATCTGTGGGATATAGAGGGAACTGCAAAACTCTTATCCAAATATAAT
GGGCATAAACGTTCACGCTTCGTCATAAGATCTTGCTTTGGCGGACTGAATCAAGAATTT
ATTTCTAGTGGAAGTGAGGACTCCCAGGTTTATATATGGCACATAAGCTCAGGAGAACTT
GTTGAGACGTTGGCGGGACATTCTGGAACAGTAAACTGTGTTAGCTGGAATCCAGCAGAT
CCTCATATGTTGGCTTCTGCTAGTGATGATCATACAATTCGCATATGGGGTTTGAATCAA
GTAAAAATGGAACACAATGACACAGTTAGTAATGATGTACACTACTGCAATGGGGGAACT
TAG

Peptide Sequence

PEP ID

Solyc05g025510.3.1
PEP Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

MGRAEDDEPPPKRVKVSSRKGDLPKSTLLTDPASCSLNDLMAHPLVRQGDDEVVGAKGVV
KKVEFVRIVAEALYSLGYNKAGARLEEESGIPLQSAEVKLLMQQILDGKWDESVATLHKI
GLIDEKIVKLASFEILEQKFFELLDGKNVMDALKTLRTELGPLCVNNDRVRELSLCILSP
LQQVLAGMSGQDVVRPKSRTKLLEELQKLLPPAVIIREQRLVHLVEQALDLQLDACRFHN
SLVGEMSLLTDHQCGRDQIPSQTLQILQDHGDEVWFLQFSHGGKYLASSAADCLVIIWEV
KLDGFFCVKHRFSGHQKPVSNISWSPDDHQLLTCGVEEVVRRWDVESGECIHIYEKNGLG
LISCGWAPDGNRILCGVTDKSISMWDLEGKELECWKGHRTIRISDLGITSDGKHVVSVCK
DNMILLFGWESKAEKVIQEDQTVTSFVLSTDNKYLLVSLWNQEIHLWDIEGTAKLLSKYN
GHKRSRFVIRSCFGGLNQEFISSGSEDSQVYIWHISSGELVETLAGHSGTVNCVSWNPAD
PHMLASASDDHTIRIWGLNQVKMEHNDTVSNDVHYCNGGT*

Transcript Sequence

Transcript ID

Solyc05g025510.3.1
Transcript Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

TCCAGGCTACGTGAGCCCATAGATTTCCTTTTGGTACCCAAAGGGCATAAATACAAACCG
AATCCCCTATCTCCCACCTCTTCACATGTGCCCCTTCGAACCGCCATTAACAAAGACCCA
ATCTCTACATATTGTGCCTCTCGGACCTCATCATCATCGTTTGTGTTTATTCCCCTGTTT
GTTTATCAATTCCTTGATTGCTTACCCACTATCCGATCTTCATTTTGATCTGAAACCTCA
GAGTACTGGAGATTCTATGCACATATATTGATACTGTGTGGGTGCTGTTTTCATCATTGA
AGGACTGATATTGCAATTTCTACTTGAAGTTCTGTTTTCCCCCTGTTGTTATATATGGGC
TGAAGTATATATTTATGGGACGTGCAGAGGATGATGAACCACCACCAAAACGTGTGAAGG
TATCCTCCAGAAAGGGAGATCTTCCAAAGAGTACACTTCTGACTGATCCTGCAAGTTGCT
CACTGAATGACTTGATGGCTCACCCCCTGGTTCGTCAAGGGGACGATGAGGTCGTTGGTG
CAAAAGGGGTTGTTAAGAAAGTTGAATTTGTGCGAATCGTAGCAGAGGCATTATATTCTC
TTGGTTATAACAAAGCTGGTGCACGTCTAGAAGAAGAGTCTGGGATTCCTTTGCAATCTG
CTGAAGTAAAGTTACTTATGCAGCAAATCCTTGATGGTAAATGGGATGAAAGTGTTGCCA
CTTTACATAAAATTGGTCTAATAGATGAAAAAATTGTTAAATTGGCATCATTTGAGATAT
TGGAACAGAAGTTTTTTGAACTGTTGGATGGAAAAAATGTCATGGATGCTTTGAAGACAT
TGAGGACTGAGCTTGGACCTCTTTGCGTAAACAATGATAGAGTCCGTGAGCTTTCTTTGT
GCATTCTATCACCTTTACAGCAGGTTCTTGCTGGGATGTCAGGTCAAGATGTTGTGCGAC
CAAAGTCACGAACAAAACTCCTAGAGGAATTGCAGAAATTGCTTCCACCCGCGGTCATAA
TTCGTGAACAAAGATTGGTACATCTCGTCGAACAGGCTCTTGACTTGCAACTAGATGCTT
GTAGGTTTCACAACTCGTTGGTAGGTGAGATGTCTTTGCTTACTGATCATCAGTGCGGAA
GAGATCAAATTCCATCTCAAACTTTGCAGATATTACAAGATCACGGTGATGAAGTATGGT
TCTTACAGTTCTCCCACGGTGGAAAATACTTGGCCTCGTCAGCTGCTGATTGTTTGGTGA
TCATATGGGAGGTGAAATTGGATGGTTTTTTCTGTGTGAAGCACCGGTTTTCTGGACACC
AGAAACCTGTCTCCAATATTTCATGGAGTCCTGATGACCATCAACTCCTTACTTGTGGGG
TAGAGGAAGTTGTCAGACGATGGGATGTTGAATCAGGTGAATGTATACATATTTATGAGA
AAAATGGTCTTGGTTTGATCTCGTGTGGATGGGCTCCTGATGGGAACAGGATATTATGCG
GTGTTACAGACAAAAGCATTAGCATGTGGGATCTGGAAGGGAAAGAGTTGGAGTGTTGGA
AAGGCCATCGGACTATTAGAATATCAGACTTGGGGATAACTAGTGACGGGAAGCATGTAG
TCTCTGTTTGTAAAGATAATATGATACTATTATTTGGATGGGAATCAAAAGCAGAGAAAG
TTATTCAGGAGGATCAAACAGTAACATCATTTGTACTGTCCACAGACAATAAGTATTTAT
TGGTTAGCCTTTGGAATCAAGAAATTCATCTGTGGGATATAGAGGGAACTGCAAAACTCT
TATCCAAATATAATGGGCATAAACGTTCACGCTTCGTCATAAGATCTTGCTTTGGCGGAC
TGAATCAAGAATTTATTTCTAGTGGAAGTGAGGACTCCCAGGTTTATATATGGCACATAA
GCTCAGGAGAACTTGTTGAGACGTTGGCGGGACATTCTGGAACAGTAAACTGTGTTAGCT
GGAATCCAGCAGATCCTCATATGTTGGCTTCTGCTAGTGATGATCATACAATTCGCATAT
GGGGTTTGAATCAAGTAAAAATGGAACACAATGACACAGTTAGTAATGATGTACACTACT
GCAATGGGGGAACTTAGAAGTGTTTCCGTCGGAGAATTAGTTAGATGCTTTACTGGTTAC
TTCATTGGATGTGTTGATCTGCATTCTAGATAAGTTGCTATTCAACTATGTGAGCAGCTT
AGACTTTATACAGGTTACATGTCATGATGATGGCAGTTTGCTTTAATATTAGCTGTTTTA
GTTTATCCATATTTGTGGTCAATATGGTGTTCTTTAAGTGAACAAATTCACAAAATGGAG
ATACAATTGGATCTATCAACTGTTATGTTTTAGCCTGTCTGCTGTTCTTCACCCGCCCTT
TACAACACGTATTTGGTAGTAGATTTCATATTACAGATTTTACGGATTAGGTAAATTAGA
AATGCACACAAGGTCATTTTGGTTGTTTTAGAGGTGTCTTATTCATTTGTTTGCATGAAG
CCAATGTAGGTCTGACTTCTAATCATTCAAGATTTTAGGTCATTCTGTGAAGAGTTAAAT
GCTTGTTTGGTTTGAATAGGTTTTAATTATCGTTAAAAGGTATTTTTTATATGATAATTT
TCATTATCACTGTGTCTACAATAACTAATCACCACTGCCCTTCTCAATTCGAGCACTATT
AACAATTGTTGTCATACTTGATAAACTCGTCATTTACGTATAATTTTATCCATATCACTA
TCACTCACTACATCATTGCGGTTATTTCCTCCACCATCACACAACTACCAACGACACCCA
TTGTCAACCACTAAACATTCTCCCGTCGTTACTATCAACCTCTATCTATTATTAATATCA
ATTAACTCCACTGGACTACCTTTGTGGACACTTCCACTATCACAATA