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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g018880.1.1
CDS Infomation

Lysine-specific histone demethylase 1 like 1 (AHRD V3.3 *-* A0A0B2PY52_GLYSO)
Sequence

ATGGTGACCAAGAAACCAAAAGTTGTGATAATAGGTGCAGGAATGGCAGGTCTTACAGCA
GCTAACAAGCTGTACACAAGTGCAGGTTGTAAAGAATTTATAGAGGTTTGTGTTGTGGAG
GGTGGTGATAGGATTGGTGGAAGGATAATAACTTCAGAGTTTGTTGGGAGTAGAATTGAG
ATGGGTGCTACTTGGATCCATGGAATTGGGGGTAGCCCTGTTTACAAGATAGCTCAAGAG
ATTAACTCACTTCATTCAGATAAGCCTTGGGAGTGTATGAATGAGTTTTTGGATGAGCCA
TTGACAATAGCTGAAGGAGGTTATCACCTCAATTCTTCTCTTGTTGACCCTATATGTAAT
CTTTTCAAGAAACTCATGGATTTTGCTCAAGGCAAACCTCATGTCCAGTTTCCATCCTCC
AATGGGAATCTTAGTATTGGTTCTTTCCTAAGGAAAGGGCTGGATGCTTACTGGGGCTCC
ATAAAAGAACAAGAGGAAACACTGGGGTTTGATAACTGGACAAGAAAATCACTAGAGGAA
GGTATTTTTGCAATGCTTGAGAACACACAAAGGACTTACACATCAGCTGGTGATTTGGAG
ACACTAGATTTTAATGCAGAAAGCGAGTATCGTATGTTTCCAGGGAAAGAGATAACCATT
GCCAAAGGTTACTCAACTATAGTTGAATCTTTGGCATCTGTTCTGCCAGATGGTATGATT
CAATTAGGCCGAAAGGTCACGAAAATTGAATGGCAACCTGATGATGGTGAAAACTGTGAT
GTTATTAAGCCAGTAAAGATACATTTTTGTGATGGATCAATCATGTATGCTGATCATGTG
ATTGTGACAGTTTCACTTGGGGTTCTAAAACAAGGGATTCACAATAATACTGGTATGTTT
AGTCCTCCACTACCTAGATTTAAGACTGAAGCAATCTCAAGGCTTGGTTTTGGTGTTGTT
AACAAACTATTCTTGCAACTAAGTCCAAATAGGGATGAGTTTCCCAACTTGCAGATGGTG
TTTCATCAGTCAGACTCGAAACTAAGGCATCGTAGAATCCCCTGGTGGATGAGGAGGACA
GCTTCTTTATGTCCTATCTATGGAACATCAAATGTTCTATTGTCATGGTTTGCAGGGAAA
GAGGCTCTTGAGGTTGAATCACTTAGTGATGAAGAGATCATTGATGGATTCTCAAAAGTG
ATCTCTGATTTACTCGAAAACTCGAAAAACAAGTGTAATGGGCATGCAGACTCAGCCATC
AAATTTGATAAGGTTTTAAAGACTAAATGGGCTACTGATCCACTGTTCTTGGGATCATAT
AGTTATGTGGCAGTTGGCTCAAGTGGAGATGATTTGGATAGTATGGCTGAGCCATTGCCA
AAAACGAACAATCATGATTTAAATTCCCTTCAGCTTCAAATTCTATTTGCGGGGGAAGCA
ACACATAGAACTCATTATTCAACAACTCATGGTGCTTACTTTAGTGGCCTAAGAGAAGCC
AACAGGCTACTTCAGCACTACAAATATATTGATATATGA

Peptide Sequence

PEP ID

Solyc05g018880.1.1
PEP Infomation

Lysine-specific histone demethylase 1 like 1 (AHRD V3.3 *-* A0A0B2PY52_GLYSO)
Sequence

MVTKKPKVVIIGAGMAGLTAANKLYTSAGCKEFIEVCVVEGGDRIGGRIITSEFVGSRIE
MGATWIHGIGGSPVYKIAQEINSLHSDKPWECMNEFLDEPLTIAEGGYHLNSSLVDPICN
LFKKLMDFAQGKPHVQFPSSNGNLSIGSFLRKGLDAYWGSIKEQEETLGFDNWTRKSLEE
GIFAMLENTQRTYTSAGDLETLDFNAESEYRMFPGKEITIAKGYSTIVESLASVLPDGMI
QLGRKVTKIEWQPDDGENCDVIKPVKIHFCDGSIMYADHVIVTVSLGVLKQGIHNNTGMF
SPPLPRFKTEAISRLGFGVVNKLFLQLSPNRDEFPNLQMVFHQSDSKLRHRRIPWWMRRT
ASLCPIYGTSNVLLSWFAGKEALEVESLSDEEIIDGFSKVISDLLENSKNKCNGHADSAI
KFDKVLKTKWATDPLFLGSYSYVAVGSSGDDLDSMAEPLPKTNNHDLNSLQLQILFAGEA
THRTHYSTTHGAYFSGLREANRLLQHYKYIDI*

Transcript Sequence

Transcript ID

Solyc05g018880.1.1
Transcript Infomation

Lysine-specific histone demethylase 1 like 1 (AHRD V3.3 *-* A0A0B2PY52_GLYSO)
Sequence

ATGGTGACCAAGAAACCAAAAGTTGTGATAATAGGTGCAGGAATGGCAGGTCTTACAGCA
GCTAACAAGCTGTACACAAGTGCAGGTTGTAAAGAATTTATAGAGGTTTGTGTTGTGGAG
GGTGGTGATAGGATTGGTGGAAGGATAATAACTTCAGAGTTTGTTGGGAGTAGAATTGAG
ATGGGTGCTACTTGGATCCATGGAATTGGGGGTAGCCCTGTTTACAAGATAGCTCAAGAG
ATTAACTCACTTCATTCAGATAAGCCTTGGGAGTGTATGAATGAGTTTTTGGATGAGCCA
TTGACAATAGCTGAAGGAGGTTATCACCTCAATTCTTCTCTTGTTGACCCTATATGTAAT
CTTTTCAAGAAACTCATGGATTTTGCTCAAGGCAAACCTCATGTCCAGTTTCCATCCTCC
AATGGGAATCTTAGTATTGGTTCTTTCCTAAGGAAAGGGCTGGATGCTTACTGGGGCTCC
ATAAAAGAACAAGAGGAAACACTGGGGTTTGATAACTGGACAAGAAAATCACTAGAGGAA
GGTATTTTTGCAATGCTTGAGAACACACAAAGGACTTACACATCAGCTGGTGATTTGGAG
ACACTAGATTTTAATGCAGAAAGCGAGTATCGTATGTTTCCAGGGAAAGAGATAACCATT
GCCAAAGGTTACTCAACTATAGTTGAATCTTTGGCATCTGTTCTGCCAGATGGTATGATT
CAATTAGGCCGAAAGGTCACGAAAATTGAATGGCAACCTGATGATGGTGAAAACTGTGAT
GTTATTAAGCCAGTAAAGATACATTTTTGTGATGGATCAATCATGTATGCTGATCATGTG
ATTGTGACAGTTTCACTTGGGGTTCTAAAACAAGGGATTCACAATAATACTGGTATGTTT
AGTCCTCCACTACCTAGATTTAAGACTGAAGCAATCTCAAGGCTTGGTTTTGGTGTTGTT
AACAAACTATTCTTGCAACTAAGTCCAAATAGGGATGAGTTTCCCAACTTGCAGATGGTG
TTTCATCAGTCAGACTCGAAACTAAGGCATCGTAGAATCCCCTGGTGGATGAGGAGGACA
GCTTCTTTATGTCCTATCTATGGAACATCAAATGTTCTATTGTCATGGTTTGCAGGGAAA
GAGGCTCTTGAGGTTGAATCACTTAGTGATGAAGAGATCATTGATGGATTCTCAAAAGTG
ATCTCTGATTTACTCGAAAACTCGAAAAACAAGTGTAATGGGCATGCAGACTCAGCCATC
AAATTTGATAAGGTTTTAAAGACTAAATGGGCTACTGATCCACTGTTCTTGGGATCATAT
AGTTATGTGGCAGTTGGCTCAAGTGGAGATGATTTGGATAGTATGGCTGAGCCATTGCCA
AAAACGAACAATCATGATTTAAATTCCCTTCAGCTTCAAATTCTATTTGCGGGGGAAGCA
ACACATAGAACTCATTATTCAACAACTCATGGTGCTTACTTTAGTGGCCTAAGAGAAGCC
AACAGGCTACTTCAGCACTACAAATATATTGATATATGA