Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g014130.3.1
CDS Infomation	COP1-interacting protein 4 (AHRD V3.3 - AT5G37190.3)
Sequence	ATGGTGAAACGACATCGCGAAGAAATTGATTCCGATGGAGCAACGGAAATGGAAACGGAA AATACGACGTCGTACAAAACGGTTTTCATAGATACCAACCTTGATACCCACTTGGCTGTA ATTGTCTCCGATTCCGATACTGTCTTCGATCTGAAAAAAAAGATTGTGTTCGAACACTTA AGGTGCTTTCCTGAAATGAGTGAGTTGAAAATTTCTTCTGTGAAGGTGAAACGAAAAAGA CATTACTATCATCTGCCTGACACTATGCTCGTTAGAGGTGTTTTTGAGGGTATCAAGAAG GAATGGTTCCTTTCTGTTGATGCTTCTAGATTTCAATGCCTTGAAAATGACCAAGGGTTA CTTTGCATCGCATATCCGCACATTGAAGCTGAAAATCTTCTCTCATGTGATTCATTCAAT GCAATGGATAAGCAGAAGGTTTTTGATACTACTGAATCTTACCCAGCTAATGGGAACTTG GCTTCTAGCTCCATCGTGGAACACAAGGAAGTTGCCAAGGTCATTGGTGAATTCAAGACT GTGAAGCGCGCCGGTAATTCACAAGAACTTTCTCCCAGATCTGGTCCTGTAGCTAAGAAG CATAAAATAAAGCACAAAGAAGACGGAGTCAACCACCCGGTAACAGGTACCAGCGCTTCA AATCATGACATAGATAATGGTTCTGAATTTAAAATTGTTGGAAATGATACTACTTTGACA AATTCTAACAAAGGAGAGCGGGAAAATATAAACATGAAACTGGTAGATGTCAGTGCTGAA CCCTTAATAAACCAACGTTCTGGTTCCAGTAAGGTGTCAAAATTGGGAACGAAGAAAAGC AGGAAGAGTGGGGCAAGTGCTGAAATCTCTGGTGTGCAGGATGAGCTATGTGGAGATAGG AACAATGATGCACTTGATGAAACATCACACACTGAGACTCTTGCAAATAAAGTTAAAATT TTGGGTAGCAAGGAAAGCAGTGAAGCTTGCACCGAGTTCAATCATAGGGATAGCTTGAAG ATCACAATCCCGGAGAACTCCACAGCAGGTAAACCAATAAAGGCAGCTTCAACAGAAGAA ACATTAGGGGACCAATCTGTGAGAACAGATACAACCGATAAGAAGAGGAAGAAGAAAAAT AAGAAGGGGAAAGACTCATCCACGTGCCATGATGAGGTTGCCTGCATGGCTCTGGGTCCC ACTGATAAATTTGTGGGAGCTAGAAGATTAGAGCAAAAGGAAGAAGTTGAAATGAAGATC TTTGACAAGTTGACTGATGTTGACTCTACTATTCATGCTACTCAATCTAGACTGAAAGAA ACATCTCCTGTTAAAGATCACGCGTTAAACAAAGAGTGTCCAGCACCAGTCAGCAAAGAT ATTTGTGAAATGAATGTAGTTGGCCAACCTATTTTTGAATCCAATATCTCTGGAGACAAT GAACTTGGAATTGTTGTTGCTAATACAACTGGAGAACAGGAGCTGATACCAAACTGTGAT TTTGAAATGCCCACGAGTGAAAAGTTGAGTAAACCAAGCACCAGGGGTCCAGTACCTTCC TACCAGTTGGGAGATTTACAAGGAGCAGCAGAAAATAGCTTTGGGAGGAAGAGAAGCAGG GCCAAGAAGTCAACTTATCATCAGGAGTTAGATATGAAAAATATTGTTGGGGCTTCTCAA AATTCTTATACATCTGACCAAGATATAGTCCGTAATGATGGTTCAAGTGATGCAACAACA AAGGTTGGTAGTATGCCAAAAACTGATGTGGATCATATAAATGAAATAGGGATCGAAGGC AAGTTGTCAGTTACTCAAGGTGCTGAGACATCCCCTCTTTTAGATAACAATGAACCAACT GGGGATACTAAAGAACAAGTTCTCTCAGCAACAAGGGCATTGGATGACAAGGAGAACATT GAATCTGGAAATGCTAGCAGCATGAAGCGAACGAAGAAGAGTCGGAGAAAATCTGCTGAA AAGATTCCTGTTAAATTAAATGGAGATGATGACAATACGGTGAACTGCCCCTCTTTTGCT GCAGGGATTGGATCTACAACTGATCCTGTAACTGGGCAGAGTAAGAAAGGTGGAATTCCG TTTGATGCTGAAGTGGTGCAGATTAGTTTAAATACAGAGGTGAAAGGGCCGCCTCAAGTT CAATCTGCAGCATGCAGATCGTCGGATTCTGCCAAGGCAGAAATGACCATCAAAGAAGTG GAAACTATCTCGACAGCTCCCTCTGATGTGAAGGTTGCTGAAGTACATGGAAACTCTGGT CGACTTAAAAAGAAAAAAACAAAAGTGGAGGTTTCCACTCATATTAATGATGTTTCATGT GCCCCTTCAGCGACACATGATACTCCTGTTAATCATTTCATTGAAGGGTCTAATCAAGAT AGAAATGCATTGCGTGCCAGCAAAAGAAAGGGAGCATCAAAACAAGTGTCAAAGAGTGCC TATGCTGTAGATACTCAACACCAAGTTGAGAAGGTAACCTGCATTGAGCCAGAACTTCTG CCCTTTGAGGAGAAGGGAAATGAGGTTGAGCATTTGCGGCTTAACCAGACTTATAAAAAT CAAGAGACTCTGAGCATTTCAGAAAAGAGGCAGAAAACGAAAACCAAAAAGAGTCAAAGT TCTAAGAAGAGCAAATCCATTTTGTCTATTCAAGATCAGGAAGGCAGTCACAAGGACTTA ACAGCTTCAAATGATAATCTAGAAGATGTGAACCCTCTGCCAGAGCCAATGGAGATGGGT GAGTCAGGTAAAAATACTCATGGTGATCAGTATGGTGGTGTGGTAGAGGAGGTGCACGAA CCTGATGTAAATACTGATAAGAGCGACACCATAAATTTCAAGCAATATTTTGTTTCTGGA CAACCAGGAGAAGTTGCATCAAAGAAACCAATGAAACCAAACAGAGACACAAAAGCTAGC AGAAAATCGAAGGTTGGCGTGACTCCTGGAGGATTTTTGGAAGATACCTCGAAATCAAGA ATTGAGGTGGCACTTCCGAATCAGGGAGATAAAACACTTCAAGAAGCTGGAAAGCTTGAA AATTATGATGCTCTTGCTTGCAAGAAGAAAATTGAGGAATCTATGGACGAATCTAGGTCC AGCTCCAGCTCAAAAGGTCCTGGCAGGTTCCCTGAGGACAATAGACGGCAAGCAGATTCA GAAATCCGAAGTTTATCTACCAGAAATACAAAAGTTAGGACTGCAAACATTGAGGAGTTT ACACAACCAAAGAAAGGATTGCTTCCTAATCCAGGGCCTAAGTTTGGGGATAGTAGATCG AGAAGGTCCGACAGTAAGGAGGGTGGAGATTCTGATTCTACGACTGACACTCTATCAGAT TCATCTTCATCTGACAGCTCAGTTGAAGGAAGTGAAATAAGCCAGGCTTCAACTCCAGAA GGAACTAATGTTGCAAAAAACAATGCTGCTGCTGCTGCTGTTGCTGGAAAGCATAAGCTC AAATCAAAATTTTTGGGCGAGGCCCTAACCATGGAGTCGATTTTGAGAAACTCTAGCCGT TTCAAGAAGGCTAAGGTTTCGGCTGCTCAATCTCAAGATGAAGAAAGTCAGCATGTCGAT GTTGTCCCTGATAGTCTAGCAGACACTCAGAATGAGTAA

Peptide Sequence

PEP ID	Solyc05g014130.3.1
PEP Infomation	COP1-interacting protein 4 (AHRD V3.3 - AT5G37190.3)
Sequence	MVKRHREEIDSDGATEMETENTTSYKTVFIDTNLDTHLAVIVSDSDTVFDLKKKIVFEHL RCFPEMSELKISSVKVKRKRHYYHLPDTMLVRGVFEGIKKEWFLSVDASRFQCLENDQGL LCIAYPHIEAENLLSCDSFNAMDKQKVFDTTESYPANGNLASSSIVEHKEVAKVIGEFKT VKRAGNSQELSPRSGPVAKKHKIKHKEDGVNHPVTGTSASNHDIDNGSEFKIVGNDTTLT NSNKGERENINMKLVDVSAEPLINQRSGSSKVSKLGTKKSRKSGASAEISGVQDELCGDR NNDALDETSHTETLANKVKILGSKESSEACTEFNHRDSLKITIPENSTAGKPIKAASTEE TLGDQSVRTDTTDKKRKKKNKKGKDSSTCHDEVACMALGPTDKFVGARRLEQKEEVEMKI FDKLTDVDSTIHATQSRLKETSPVKDHALNKECPAPVSKDICEMNVVGQPIFESNISGDN ELGIVVANTTGEQELIPNCDFEMPTSEKLSKPSTRGPVPSYQLGDLQGAAENSFGRKRSR AKKSTYHQELDMKNIVGASQNSYTSDQDIVRNDGSSDATTKVGSMPKTDVDHINEIGIEG KLSVTQGAETSPLLDNNEPTGDTKEQVLSATRALDDKENIESGNASSMKRTKKSRRKSAE KIPVKLNGDDDNTVNCPSFAAGIGSTTDPVTGQSKKGGIPFDAEVVQISLNTEVKGPPQV QSAACRSSDSAKAEMTIKEVETISTAPSDVKVAEVHGNSGRLKKKKTKVEVSTHINDVSC APSATHDTPVNHFIEGSNQDRNALRASKRKGASKQVSKSAYAVDTQHQVEKVTCIEPELL PFEEKGNEVEHLRLNQTYKNQETLSISEKRQKTKTKKSQSSKKSKSILSIQDQEGSHKDL TASNDNLEDVNPLPEPMEMGESGKNTHGDQYGGVVEEVHEPDVNTDKSDTINFKQYFVSG QPGEVASKKPMKPNRDTKASRKSKVGVTPGGFLEDTSKSRIEVALPNQGDKTLQEAGKLE NYDALACKKKIEESMDESRSSSSSKGPGRFPEDNRRQADSEIRSLSTRNTKVRTANIEEF TQPKKGLLPNPGPKFGDSRSRRSDSKEGGDSDSTTDTLSDSSSSDSSVEGSEISQASTPE GTNVAKNNAAAAAVAGKHKLKSKFLGEALTMESILRNSSRFKKAKVSAAQSQDEESQHVD VVPDSLADTQNE*

Transcript Sequence

Transcript ID	Solyc05g014130.3.1
Transcript Infomation	COP1-interacting protein 4 (AHRD V3.3 - AT5G37190.3)
Sequence	CTTCACTTTCAGTAATAGCCTCCTCCGAGCTAAAACCCTTTGCCTATTTCTCTTCTGATC GTCAAATTTCCCGTTTCCGGCCATCGTGGTTGCCGGCGCAATCATGGTGAAACGACATCG CGAAGAAATTGATTCCGATGGAGCAACGGAAATGGAAACGGAAAATACGACGTCGTACAA AACGGTTTTCATAGATACCAACCTTGATACCCACTTGGCTGTAATTGTCTCCGATTCCGA TACTGTCTTCGATCTGAAAAAAAAGATTGTGTTCGAACACTTAAGGTGCTTTCCTGAAAT GAGTGAGTTGAAAATTTCTTCTGTGAAGGTGAAACGAAAAAGACATTACTATCATCTGCC TGACACTATGCTCGTTAGAGGTGTTTTTGAGGGTATCAAGAAGGAATGGTTCCTTTCTGT TGATGCTTCTAGATTTCAATGCCTTGAAAATGACCAAGGGTTACTTTGCATCGCATATCC GCACATTGAAGCTGAAAATCTTCTCTCATGTGATTCATTCAATGCAATGGATAAGCAGAA GGTTTTTGATACTACTGAATCTTACCCAGCTAATGGGAACTTGGCTTCTAGCTCCATCGT GGAACACAAGGAAGTTGCCAAGGTCATTGGTGAATTCAAGACTGTGAAGCGCGCCGGTAA TTCACAAGAACTTTCTCCCAGATCTGGTCCTGTAGCTAAGAAGCATAAAATAAAGCACAA AGAAGACGGAGTCAACCACCCGGTAACAGGTACCAGCGCTTCAAATCATGACATAGATAA TGGTTCTGAATTTAAAATTGTTGGAAATGATACTACTTTGACAAATTCTAACAAAGGAGA GCGGGAAAATATAAACATGAAACTGGTAGATGTCAGTGCTGAACCCTTAATAAACCAACG TTCTGGTTCCAGTAAGGTGTCAAAATTGGGAACGAAGAAAAGCAGGAAGAGTGGGGCAAG TGCTGAAATCTCTGGTGTGCAGGATGAGCTATGTGGAGATAGGAACAATGATGCACTTGA TGAAACATCACACACTGAGACTCTTGCAAATAAAGTTAAAATTTTGGGTAGCAAGGAAAG CAGTGAAGCTTGCACCGAGTTCAATCATAGGGATAGCTTGAAGATCACAATCCCGGAGAA CTCCACAGCAGGTAAACCAATAAAGGCAGCTTCAACAGAAGAAACATTAGGGGACCAATC TGTGAGAACAGATACAACCGATAAGAAGAGGAAGAAGAAAAATAAGAAGGGGAAAGACTC ATCCACGTGCCATGATGAGGTTGCCTGCATGGCTCTGGGTCCCACTGATAAATTTGTGGG AGCTAGAAGATTAGAGCAAAAGGAAGAAGTTGAAATGAAGATCTTTGACAAGTTGACTGA TGTTGACTCTACTATTCATGCTACTCAATCTAGACTGAAAGAAACATCTCCTGTTAAAGA TCACGCGTTAAACAAAGAGTGTCCAGCACCAGTCAGCAAAGATATTTGTGAAATGAATGT AGTTGGCCAACCTATTTTTGAATCCAATATCTCTGGAGACAATGAACTTGGAATTGTTGT TGCTAATACAACTGGAGAACAGGAGCTGATACCAAACTGTGATTTTGAAATGCCCACGAG TGAAAAGTTGAGTAAACCAAGCACCAGGGGTCCAGTACCTTCCTACCAGTTGGGAGATTT ACAAGGAGCAGCAGAAAATAGCTTTGGGAGGAAGAGAAGCAGGGCCAAGAAGTCAACTTA TCATCAGGAGTTAGATATGAAAAATATTGTTGGGGCTTCTCAAAATTCTTATACATCTGA CCAAGATATAGTCCGTAATGATGGTTCAAGTGATGCAACAACAAAGGTTGGTAGTATGCC AAAAACTGATGTGGATCATATAAATGAAATAGGGATCGAAGGCAAGTTGTCAGTTACTCA AGGTGCTGAGACATCCCCTCTTTTAGATAACAATGAACCAACTGGGGATACTAAAGAACA AGTTCTCTCAGCAACAAGGGCATTGGATGACAAGGAGAACATTGAATCTGGAAATGCTAG CAGCATGAAGCGAACGAAGAAGAGTCGGAGAAAATCTGCTGAAAAGATTCCTGTTAAATT AAATGGAGATGATGACAATACGGTGAACTGCCCCTCTTTTGCTGCAGGGATTGGATCTAC AACTGATCCTGTAACTGGGCAGAGTAAGAAAGGTGGAATTCCGTTTGATGCTGAAGTGGT GCAGATTAGTTTAAATACAGAGGTGAAAGGGCCGCCTCAAGTTCAATCTGCAGCATGCAG ATCGTCGGATTCTGCCAAGGCAGAAATGACCATCAAAGAAGTGGAAACTATCTCGACAGC TCCCTCTGATGTGAAGGTTGCTGAAGTACATGGAAACTCTGGTCGACTTAAAAAGAAAAA AACAAAAGTGGAGGTTTCCACTCATATTAATGATGTTTCATGTGCCCCTTCAGCGACACA TGATACTCCTGTTAATCATTTCATTGAAGGGTCTAATCAAGATAGAAATGCATTGCGTGC CAGCAAAAGAAAGGGAGCATCAAAACAAGTGTCAAAGAGTGCCTATGCTGTAGATACTCA ACACCAAGTTGAGAAGGTAACCTGCATTGAGCCAGAACTTCTGCCCTTTGAGGAGAAGGG AAATGAGGTTGAGCATTTGCGGCTTAACCAGACTTATAAAAATCAAGAGACTCTGAGCAT TTCAGAAAAGAGGCAGAAAACGAAAACCAAAAAGAGTCAAAGTTCTAAGAAGAGCAAATC CATTTTGTCTATTCAAGATCAGGAAGGCAGTCACAAGGACTTAACAGCTTCAAATGATAA TCTAGAAGATGTGAACCCTCTGCCAGAGCCAATGGAGATGGGTGAGTCAGGTAAAAATAC TCATGGTGATCAGTATGGTGGTGTGGTAGAGGAGGTGCACGAACCTGATGTAAATACTGA TAAGAGCGACACCATAAATTTCAAGCAATATTTTGTTTCTGGACAACCAGGAGAAGTTGC ATCAAAGAAACCAATGAAACCAAACAGAGACACAAAAGCTAGCAGAAAATCGAAGGTTGG CGTGACTCCTGGAGGATTTTTGGAAGATACCTCGAAATCAAGAATTGAGGTGGCACTTCC GAATCAGGGAGATAAAACACTTCAAGAAGCTGGAAAGCTTGAAAATTATGATGCTCTTGC TTGCAAGAAGAAAATTGAGGAATCTATGGACGAATCTAGGTCCAGCTCCAGCTCAAAAGG TCCTGGCAGGTTCCCTGAGGACAATAGACGGCAAGCAGATTCAGAAATCCGAAGTTTATC TACCAGAAATACAAAAGTTAGGACTGCAAACATTGAGGAGTTTACACAACCAAAGAAAGG ATTGCTTCCTAATCCAGGGCCTAAGTTTGGGGATAGTAGATCGAGAAGGTCCGACAGTAA GGAGGGTGGAGATTCTGATTCTACGACTGACACTCTATCAGATTCATCTTCATCTGACAG CTCAGTTGAAGGAAGTGAAATAAGCCAGGCTTCAACTCCAGAAGGAACTAATGTTGCAAA AAACAATGCTGCTGCTGCTGCTGTTGCTGGAAAGCATAAGCTCAAATCAAAATTTTTGGG CGAGGCCCTAACCATGGAGTCGATTTTGAGAAACTCTAGCCGTTTCAAGAAGGCTAAGGT TTCGGCTGCTCAATCTCAAGATGAAGAAAGTCAGCATGTCGATGTTGTCCCTGATAGTCT AGCAGACACTCAGAATGAGTAACTCCTCCCTTCTCTTTTGTTGCTATTGAAATGACCCAA TATTTGGTACACAATCACCTGTCCATTTTCTGTCACCTGGGGCTGTTCAAATCAACAAGA AAATGAAAAGGATGAAGGAGATAAATGCTTCTTGGCCGTAGGTGTTTTATGTATTATGAG AAAAATTCTATGCACATGCCGTGATTTTGGTTCTATGAACATTGAAATTTTGTCTGGTCT TTGATATGTAGTGTAATTGTAATTCGTTCAATTTGTTGAAACTCGGAGAGATTGATTGCT GTTAGGGGTATTTTACTGGTCAGTATGGTGTGCTTTTTAAACATTTTGATACGGCATTTT TGGTATTAAGGGTCATTTGGCCAGGTGATGAA