Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g013990.3.1
CDS Infomation

T-complex protein 1 (AHRD V3.3 *** B9HTF6_POPTR)
Sequence

ATGGCGTTAGCTTTCGATGAATTCGGAAGGCCGTTTATAATACTAAGGGAGCAAGAACAA
AAAACCAGATTAAGAGGCCTCGATGCTCAGAAGGCCAACATTTCCGCCGGAAAAGCTGTT
GCACGTATTTTACGTACCTCACTTGGTCCTAAAGGCATGGATAAGATGCTTCAGAGCCCT
GACGGCGATGTCACCATCACAAATGATGGTGCCACCATTTTGGAGCAGATGGATGTTGAC
AATCAGATTGGGAAGTTAATGGTTGAGTTGTCACGAAGTCAGGATTATGAAATCGGTGAT
GGAACCACTGGAGTTGTTGTCATGGCTGGGGCACTCCTAGAACAAGCTGAGAAGTTGTTA
GAACGTGGCATTCATCCTATTCGGATTGCAGAAGGGTATGAAATGGCTTCAAGGATTGCA
GTTGAGCATTTGGAGCGTGTAGCTCATAAGTTCGAATTTGGTCAGAATGATGTTGAGCCT
TTGGTTCAAACTTGCATGACTACTTTGTCATCTAAGATTGTGAATAGATGCAAACGTAGC
ATGGCTGAAATTGCTGTTAAAGCTGTGTTAGCAGTTGCTGATTTAGAGAGGAAGGATGTA
AACCTGGACTTAATCAAAGTTGAAGGGAAAGTTGGTGGGAAGTTAGAGGACACAGAGCTA
ATTTATGGTATTATAGTTGACAAAGATATGAGTCATCCACAGATGCCAAAGCAAATTGAG
GATGCAAAAATTGCAATTTTGACATGTCCCTTTGAGCCTCCTAAGCCAAAGACTAAGCAT
AAGGTTGACATTGATACTGTGGAGAAGTTTCAAACTTTACGCCTACAGGAGCAGAAGTAC
TTTGATGACATGGTCCAGAAGTGCAAGGATGTTGGTGCCACCTTAGTTATCTGCCAGTGG
GGCTTTGATGATGAAGCTAATCACTTATTAATGCATAGAAATTTGCCTGCTGTTAGATGG
GTAGGTGGTGTGGAATTGGAGCTGATAGCAATTGCCACAGGTGGGAGAATAGTACCAAGG
TTTCAAGAGTTGACACCCGAAAAACTTGGCAAGGCTGGTATTGTTCGGGAGAAATCTTTC
GGTACAACAAAGGATAGAATGATCTACATTGAGCATTGTGCAAATTCAAGAGCAGTAACT
ATATTTATCCGTGGTGGAAACAAGATGATGATAGAGGAGACAAAACGTAGTATCCATGAT
GCTTTATGTGTTGCTAGAAATCTTATTCGCAACAATTCAATTGTATATGGTGGTGGTTCA
GCAGAGATTTCTTGCTCAATTGCTGTTGAAGCGGCTGCTGATAAACATCCAGGAGTTGAA
CAGTACGCAATCAGGGCATTTGCAGATGCTTTGGATGCTGTCCCAATGGCACTTGCTGAG
AACAGTGGTCTCCAGCCTATTGAAACTCTATCTGCTGTTAAGTCTCAACAAATTAAGGAG
AATAATCCATGCTGTGGAATAGATTGTAATGATGTTGGCACAAATGACATGCGTGAACAA
AATGTCTTTGAGACTCTAATTGGTAAGCAACAACAGATTTTGCTTGCAACTCAGGTCGTC
AAGATGATCCTAAAGATTGATGATGTGATTACTCCATCCGAGTATTGA

Peptide Sequence

PEP ID

Solyc05g013990.3.1
PEP Infomation

T-complex protein 1 (AHRD V3.3 *** B9HTF6_POPTR)
Sequence

MALAFDEFGRPFIILREQEQKTRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSP
DGDVTITNDGATILEQMDVDNQIGKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAEKLL
ERGIHPIRIAEGYEMASRIAVEHLERVAHKFEFGQNDVEPLVQTCMTTLSSKIVNRCKRS
MAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIIVDKDMSHPQMPKQIE
DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW
GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGIVREKSF
GTTKDRMIYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS
AEISCSIAVEAAADKHPGVEQYAIRAFADALDAVPMALAENSGLQPIETLSAVKSQQIKE
NNPCCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY*

Transcript Sequence

Transcript ID

Solyc05g013990.3.1
Transcript Infomation

T-complex protein 1 (AHRD V3.3 *** B9HTF6_POPTR)
Sequence

ATATTTCCGCTCTCTCGACCCGATTTGATTTGACCCGACCCGACCCATTTAGATACAGTA
CATGAATAAACCAGAAGCGGGAGCACTTTTTATTTAAGGGTTTATCGCAGACAGCATGCT
AGGGTTTTGAAGTGTTCTAGATTCATAAAACAACTCTCTCTGTCACTGTCGCCGGAGATT
ATTATTTACCGATCTGACCGGAAGCAGGTCACAGTGAACAATGGCGTTAGCTTTCGATGA
ATTCGGAAGGCCGTTTATAATACTAAGGGAGCAAGAACAAAAAACCAGATTAAGAGGCCT
CGATGCTCAGAAGGCCAACATTTCCGCCGGAAAAGCTGTTGCACGTATTTTACGTACCTC
ACTTGGTCCTAAAGGCATGGATAAGATGCTTCAGAGCCCTGACGGCGATGTCACCATCAC
AAATGATGGTGCCACCATTTTGGAGCAGATGGATGTTGACAATCAGATTGGGAAGTTAAT
GGTTGAGTTGTCACGAAGTCAGGATTATGAAATCGGTGATGGAACCACTGGAGTTGTTGT
CATGGCTGGGGCACTCCTAGAACAAGCTGAGAAGTTGTTAGAACGTGGCATTCATCCTAT
TCGGATTGCAGAAGGGTATGAAATGGCTTCAAGGATTGCAGTTGAGCATTTGGAGCGTGT
AGCTCATAAGTTCGAATTTGGTCAGAATGATGTTGAGCCTTTGGTTCAAACTTGCATGAC
TACTTTGTCATCTAAGATTGTGAATAGATGCAAACGTAGCATGGCTGAAATTGCTGTTAA
AGCTGTGTTAGCAGTTGCTGATTTAGAGAGGAAGGATGTAAACCTGGACTTAATCAAAGT
TGAAGGGAAAGTTGGTGGGAAGTTAGAGGACACAGAGCTAATTTATGGTATTATAGTTGA
CAAAGATATGAGTCATCCACAGATGCCAAAGCAAATTGAGGATGCAAAAATTGCAATTTT
GACATGTCCCTTTGAGCCTCCTAAGCCAAAGACTAAGCATAAGGTTGACATTGATACTGT
GGAGAAGTTTCAAACTTTACGCCTACAGGAGCAGAAGTACTTTGATGACATGGTCCAGAA
GTGCAAGGATGTTGGTGCCACCTTAGTTATCTGCCAGTGGGGCTTTGATGATGAAGCTAA
TCACTTATTAATGCATAGAAATTTGCCTGCTGTTAGATGGGTAGGTGGTGTGGAATTGGA
GCTGATAGCAATTGCCACAGGTGGGAGAATAGTACCAAGGTTTCAAGAGTTGACACCCGA
AAAACTTGGCAAGGCTGGTATTGTTCGGGAGAAATCTTTCGGTACAACAAAGGATAGAAT
GATCTACATTGAGCATTGTGCAAATTCAAGAGCAGTAACTATATTTATCCGTGGTGGAAA
CAAGATGATGATAGAGGAGACAAAACGTAGTATCCATGATGCTTTATGTGTTGCTAGAAA
TCTTATTCGCAACAATTCAATTGTATATGGTGGTGGTTCAGCAGAGATTTCTTGCTCAAT
TGCTGTTGAAGCGGCTGCTGATAAACATCCAGGAGTTGAACAGTACGCAATCAGGGCATT
TGCAGATGCTTTGGATGCTGTCCCAATGGCACTTGCTGAGAACAGTGGTCTCCAGCCTAT
TGAAACTCTATCTGCTGTTAAGTCTCAACAAATTAAGGAGAATAATCCATGCTGTGGAAT
AGATTGTAATGATGTTGGCACAAATGACATGCGTGAACAAAATGTCTTTGAGACTCTAAT
TGGTAAGCAACAACAGATTTTGCTTGCAACTCAGGTCGTCAAGATGATCCTAAAGATTGA
TGATGTGATTACTCCATCCGAGTATTGATTTTAAATATGGAGATGCACACTTTTCTTCGT
CTTAGAGAACATGAATGTTTTCCTTCTGGCTATGCAAACCAGAAGTTTTGTTGGGTGAAA
CTTTCACGATTTTATGCTTTGGCTTCTATGTTGTCTATTTGAATAGAATTTTGGTGGTTG
ATGAATTTCACCTGATTGGTGACCAATTTCTGTCAACAGTAATTTCCATCGAAATATTAT
TTATGAAGATTTTACTAATTTATCTGCTAGAACTAGAATTCTCAAAAACTATAGTTTCTT
TACGCTCTAATCTTAACTTTGTG