Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g013920.3.1
CDS Infomation

Cysteine protease, putative (AHRD V3.3 *** B9RMS9_RICCO)
Sequence

ATGCTCCTGAATCAGCTGACTGCATATACATATCTATCTGTATACAGGCCCCAAACTCCT
ATTCCCATCCCAAACAAGATGTTTTTTACCCAATCAAGGGAGTTAGTTCTAAAAGCAATT
TCAAGAGTGATGGAGGCATGGAAGAAGATTTTCTTGATTTCGCTTTCGTTGGCTATGATA
TTTGGTCTAGTTAATAGTTTGGAGTTCACTGAAAAAGATATTGCATCTGAAGAAAACTTA
TGGGATTTGTACCAGAAATGGAGGAGCCATCACACTGTTTCTCGAGACCTAACCGAGAAA
CAAAAACGTTTCAATGTGTTCAAGGCGAATGTGATGCATATTCATAATGTCAACAAGATG
GACAGACCTTATAAGTTGAAACTCAACAAGTTTGCTGATATGACCAACCATGAATTCAGA
AATTTTTATAGCTCTAAGATAAAACACTTCAGAATGCTTCATGGTCCCCGCCCTACTACC
GGATTTATGCACGACAAGGCTGATAATCTCCCAGCATCCGTTGATTGGAGAAAGAAAGGA
GCTGTTACTGGTGTAAAGGATCAAGGAAAATGCGGTAGCTGTTGGGCGTTCTCTACGATA
GTTGGAGTTGAGGGAATAAACAAAATCAAGACAGGTAAATTAGTTTCACTGTCTGAACAA
GAGCTTGTTGATTGTGAAAAGGATAACGAAGGATGCAACGGAGGACTAATGGAAAATGCA
TATGAATTCATCAAGAAAAATGGAGGAATTACGACTGAAAGGATATATCCTTACAAAGCC
AGCGATAGTCGTTGTGATTCTTTAAAGAGGAATTCCCCCGTGGTTAATATCGATGGACAT
GAAATGGTACCTGAAAAAGATGAGGATGCTTTGATGAAAGCTGTTGCTAACCAACCAATA
TCTGTTGCTATTGATGCTAGTGGTTCCGATCTGCAATTTTACTCTGAGGGAGTGTTCACT
GGAAATTGTGGCACAGAGCTAGACCATGGGGTAGCAGTTGTGGGCTATGGATCAACTCAT
GATGGGACAAAGTACTGGATAGTGAAGAACTCATGGGGGACTGAATGGGGTGAACAAGGT
TATTTTCGAATGCAACGAGGCATCGATGCTGAAGAGGGACTCTGTGGGATAACCATGGAG
GCTTCATATCCAGTCAAGTTATCTCCAGACAATCCCAAACCAGCACCCTCTAAGGATGAA
CTCTAG

Peptide Sequence

PEP ID

Solyc05g013920.3.1
PEP Infomation

Cysteine protease, putative (AHRD V3.3 *** B9RMS9_RICCO)
Sequence

MLLNQLTAYTYLSVYRPQTPIPIPNKMFFTQSRELVLKAISRVMEAWKKIFLISLSLAMI
FGLVNSLEFTEKDIASEENLWDLYQKWRSHHTVSRDLTEKQKRFNVFKANVMHIHNVNKM
DRPYKLKLNKFADMTNHEFRNFYSSKIKHFRMLHGPRPTTGFMHDKADNLPASVDWRKKG
AVTGVKDQGKCGSCWAFSTIVGVEGINKIKTGKLVSLSEQELVDCEKDNEGCNGGLMENA
YEFIKKNGGITTERIYPYKASDSRCDSLKRNSPVVNIDGHEMVPEKDEDALMKAVANQPI
SVAIDASGSDLQFYSEGVFTGNCGTELDHGVAVVGYGSTHDGTKYWIVKNSWGTEWGEQG
YFRMQRGIDAEEGLCGITMEASYPVKLSPDNPKPAPSKDEL*

Transcript Sequence

Transcript ID

Solyc05g013920.3.1
Transcript Infomation

Cysteine protease, putative (AHRD V3.3 *** B9RMS9_RICCO)
Sequence

CTAATCAGAGAAAACAAAAAGCGGGAGTCTCTTGCCTAAAGGCTGCTGAGAATTGCGAAC
CTAAAGTTGCATTCAGTTCAACAATTTGTTTTTGCTGTCTTTTTGAACATTTCTGGACCT
CTGCTTCCTAATTTCCATAAAATCATGTAATGATGGTCATGAATGCCTTAAATGTAAACT
CAAGTTTGGACCTGTCTCAGTGCTCTGCTGTCAATAGCATGATTATGCTTGCACTGGTAA
ACATGTAGCTTCTTTTAATCTTACAATAAATACCATTTTTTTGGTTTGGTTGGTCTTTGG
AGTAAATTATGGTGAATTGCTATTTGTCTGCTATTCTTTCATAACCTCGTTTACTTTGCT
CGCATGTCAATGTTTTGAAATTTTGATTCTGTGAAGATGAACCCCTTCGTTTTCTCACTC
GTTCTGGTTTTTAATTTCCAAGTGTTGTTGCAAATGTTAACTCTGCACTTGTTTTAGGTG
GAAGATATAATTATAATTTCTAGCAGAGTTCAATTTTCCTATATTTGGTGCAAAGTTAGA
CTTGTGAGTTTGTCCTGCAAGAGATATGAAAAGTTATTTCACCAACCAAAACTCATGCTC
CTGAATCAGCTGACTGCATATACATATCTATCTGTATACAGGCCCCAAACTCCTATTCCC
ATCCCAAACAAGATGTTTTTTACCCAATCAAGGGAGTTAGTTCTAAAAGCAATTTCAAGA
GTGATGGAGGCATGGAAGAAGATTTTCTTGATTTCGCTTTCGTTGGCTATGATATTTGGT
CTAGTTAATAGTTTGGAGTTCACTGAAAAAGATATTGCATCTGAAGAAAACTTATGGGAT
TTGTACCAGAAATGGAGGAGCCATCACACTGTTTCTCGAGACCTAACCGAGAAACAAAAA
CGTTTCAATGTGTTCAAGGCGAATGTGATGCATATTCATAATGTCAACAAGATGGACAGA
CCTTATAAGTTGAAACTCAACAAGTTTGCTGATATGACCAACCATGAATTCAGAAATTTT
TATAGCTCTAAGATAAAACACTTCAGAATGCTTCATGGTCCCCGCCCTACTACCGGATTT
ATGCACGACAAGGCTGATAATCTCCCAGCATCCGTTGATTGGAGAAAGAAAGGAGCTGTT
ACTGGTGTAAAGGATCAAGGAAAATGCGGTAGCTGTTGGGCGTTCTCTACGATAGTTGGA
GTTGAGGGAATAAACAAAATCAAGACAGGTAAATTAGTTTCACTGTCTGAACAAGAGCTT
GTTGATTGTGAAAAGGATAACGAAGGATGCAACGGAGGACTAATGGAAAATGCATATGAA
TTCATCAAGAAAAATGGAGGAATTACGACTGAAAGGATATATCCTTACAAAGCCAGCGAT
AGTCGTTGTGATTCTTTAAAGAGGAATTCCCCCGTGGTTAATATCGATGGACATGAAATG
GTACCTGAAAAAGATGAGGATGCTTTGATGAAAGCTGTTGCTAACCAACCAATATCTGTT
GCTATTGATGCTAGTGGTTCCGATCTGCAATTTTACTCTGAGGGAGTGTTCACTGGAAAT
TGTGGCACAGAGCTAGACCATGGGGTAGCAGTTGTGGGCTATGGATCAACTCATGATGGG
ACAAAGTACTGGATAGTGAAGAACTCATGGGGGACTGAATGGGGTGAACAAGGTTATTTT
CGAATGCAACGAGGCATCGATGCTGAAGAGGGACTCTGTGGGATAACCATGGAGGCTTCA
TATCCAGTCAAGTTATCTCCAGACAATCCCAAACCAGCACCCTCTAAGGATGAACTCTAG
ATTGGCTCGAGTAACGACTCTGCTTCAGCCTGTAGCAAGCTATAGTATTTACAAAGAAAC
TTAGGTAAAAAGCAACACATATATGCAATCTATGAGTTATTTTGTATTGGTTTGCATGAA
TAAAATGCTTAGGGTTGCACATGTTTGTAAGTTGTAGCCTTTAGCTTCTGCTTTCAATCC
TTTTGGCTACAGAACCTCATCAAGATTGGCTTGTGAATGGGCCACTTCTTGTTCGTATAT
GATAGGAAAAACTCACGTGGGGTGTGTCTGAACAATCTCCCACATTGGTAGCTGAATTAA
AAAAGAAGTCATTTATAATGGTGTGAGACGAGGAAAACCATGCTAACTTTAGTTCAAAGC
AAATGATATCACAACGTGATAAAAGTGATGAGATATTAGTATGATT