Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g012780.3.1
CDS Infomation

DUF1336 family protein (DUF1336) (AHRD V3.3 *** AT3G29180.3)
Sequence

ATGGGTGGATGTGTGTCGAGTCCGTCTAAGAAGATTAAGTTAAAAGGAAAGTACATTCCC
AAGACTCGTAGGTTTCGAAGAAAGGCACCATGTTCTGTTTCTGTTGCACCGATAGAGCAA
CTTACTGATGCGGGAGAGTATGCAAGAGATGTTGATGTTTGTGAGTTTGTCACAGTAGAC
TACGAGAGCAGGACGTCGAGTCCTGCATTTCATCATTCCCTAAATTATCATCAAGTTGAT
GTAGCCGGATTAAGCCAAGAGGAAGCATGGTTTGATACTTGCAGTGTCCTCGACTCAGAT
TCAGACGAAGACTTCACTAGTGTTCTTGGAGAAATTTGCCCTTCACTCGTCGTTGCTGCT
GGGAGTGCATTAGATCATCAAAGCCAAATTGAAAGCAACTTGCGCTTTTATGATACTATC
AACAACAATGATATACCATGTGTAGATGGAAGTTTTACTAAGAGGAGAAATGTTGCGGAG
GATCTAAGTTTGACATCTCAACGAAAGAAGTTATCAGTTGTAACACTTGCTGATAGTAAG
ATACTGCATAATCAAGACACGACGACTGAGTTTTGTCCTTCAAGAAGATTATTTTATCAT
CCAAAAGCAGGATTTCTTATTCCACATTCCAGTAATGTGAAATCGACTCAAGGATGTTGG
AGTCCGGTTTCTCCTTCCATATTTAAGCTTCGAGGCACGAATTACTTCAGGCATGTTACT
ATGGTTACATTAGATAAAAGGAAATTTCCTGCCGCGAATTGTTGCCCTTATGTACCTATT
GGTGTTGATTTATTTGTTTCTCCACGGAAGATATCTCACATAGCGCGGTATCTTGACCTT
CCCTATGTAGAGCCACATGAAAAAGTTCCATCATTGCTTGTCGTCAATATACAGCTGCCT
AGTTACCCTACTTCGATGTTCCTTGGGGAAAACGATGGAGAGGGGATGAGCCTTGTACTA
TATTTCAAAGTATCAGAAAATTTTGAAAAGGAGGTTTCTCCACAATTTCAAGACAGTATA
AAGAGACTTGTAAAGGATGAAATGGAAACCGTAAAGGGTTTTGCAAAGGAATCAACAGTT
CCTTTCAGAGAAAGACTCAAAATTATGGTTGGTGTAGCCAATCCTGAAGACCTTCATTTA
AACCCCGCGGAGAAAAAGCTTTTACATGCATATAATGAAAAACCAGTGCTTTCACGTCCT
CAACATGCGTTCTATGAGGGAGACAGCTACTTCGAAATAGACTTGGATGTTCATCGTTTC
AGTTACATTTCCAGGAAAGGATTTGATGCATTCCGAGAACGGTTGAAACATGGAATTCTT
GATCTTGGATTGACAATTCAGGCACAGAAGCAAGAGGAGCTGCCAGAGAGAGTTTTGTGC
TGTATTCAATTGAACAAAATTGATTTTGTGAATTGTGGCCAAATACCTCAACTTATTATT
CCTATTGATAATAATTGA

Peptide Sequence

PEP ID

Solyc05g012780.3.1
PEP Infomation

DUF1336 family protein (DUF1336) (AHRD V3.3 *** AT3G29180.3)
Sequence

MGGCVSSPSKKIKLKGKYIPKTRRFRRKAPCSVSVAPIEQLTDAGEYARDVDVCEFVTVD
YESRTSSPAFHHSLNYHQVDVAGLSQEEAWFDTCSVLDSDSDEDFTSVLGEICPSLVVAA
GSALDHQSQIESNLRFYDTINNNDIPCVDGSFTKRRNVAEDLSLTSQRKKLSVVTLADSK
ILHNQDTTTEFCPSRRLFYHPKAGFLIPHSSNVKSTQGCWSPVSPSIFKLRGTNYFRHVT
MVTLDKRKFPAANCCPYVPIGVDLFVSPRKISHIARYLDLPYVEPHEKVPSLLVVNIQLP
SYPTSMFLGENDGEGMSLVLYFKVSENFEKEVSPQFQDSIKRLVKDEMETVKGFAKESTV
PFRERLKIMVGVANPEDLHLNPAEKKLLHAYNEKPVLSRPQHAFYEGDSYFEIDLDVHRF
SYISRKGFDAFRERLKHGILDLGLTIQAQKQEELPERVLCCIQLNKIDFVNCGQIPQLII
PIDNN*

Transcript Sequence

Transcript ID

Solyc05g012780.3.1
Transcript Infomation

DUF1336 family protein (DUF1336) (AHRD V3.3 *** AT3G29180.3)
Sequence

ACTTTAGGGGTGGAGGTAGCTAACTATATATTAATTGTACAAATGAGAACATAAACAAAA
CTTTAATTTGGAATTAGCAACTCAACATTGGAAGAGTTATGTCACACTATTCCAAATATG
GTCATTTAAGCCTTTTGTTCTTTTTTGGCATGTGAGGTAAAGAATGATTGGTAATTTGCA
CCTTTTCTGAAAATACAAGTGAAATCATGTTTGTTTTGTTCATATCTAAAGTGTTTTTGA
ATGCTATAATCTTGCAGTTTTTCGGTTGATATATGCAAAAAGGAGGAAACGGGTGTTTTC
TGGTGTTTGTGAACTTGTAATATGGGTGGATGTGTGTCGAGTCCGTCTAAGAAGATTAAG
TTAAAAGGAAAGTACATTCCCAAGACTCGTAGGTTTCGAAGAAAGGCACCATGTTCTGTT
TCTGTTGCACCGATAGAGCAACTTACTGATGCGGGAGAGTATGCAAGAGATGTTGATGTT
TGTGAGTTTGTCACAGTAGACTACGAGAGCAGGACGTCGAGTCCTGCATTTCATCATTCC
CTAAATTATCATCAAGTTGATGTAGCCGGATTAAGCCAAGAGGAAGCATGGTTTGATACT
TGCAGTGTCCTCGACTCAGATTCAGACGAAGACTTCACTAGTGTTCTTGGAGAAATTTGC
CCTTCACTCGTCGTTGCTGCTGGGAGTGCATTAGATCATCAAAGCCAAATTGAAAGCAAC
TTGCGCTTTTATGATACTATCAACAACAATGATATACCATGTGTAGATGGAAGTTTTACT
AAGAGGAGAAATGTTGCGGAGGATCTAAGTTTGACATCTCAACGAAAGAAGTTATCAGTT
GTAACACTTGCTGATAGTAAGATACTGCATAATCAAGACACGACGACTGAGTTTTGTCCT
TCAAGAAGATTATTTTATCATCCAAAAGCAGGATTTCTTATTCCACATTCCAGTAATGTG
AAATCGACTCAAGGATGTTGGAGTCCGGTTTCTCCTTCCATATTTAAGCTTCGAGGCACG
AATTACTTCAGGCATGTTACTATGGTTACATTAGATAAAAGGAAATTTCCTGCCGCGAAT
TGTTGCCCTTATGTACCTATTGGTGTTGATTTATTTGTTTCTCCACGGAAGATATCTCAC
ATAGCGCGGTATCTTGACCTTCCCTATGTAGAGCCACATGAAAAAGTTCCATCATTGCTT
GTCGTCAATATACAGCTGCCTAGTTACCCTACTTCGATGTTCCTTGGGGAAAACGATGGA
GAGGGGATGAGCCTTGTACTATATTTCAAAGTATCAGAAAATTTTGAAAAGGAGGTTTCT
CCACAATTTCAAGACAGTATAAAGAGACTTGTAAAGGATGAAATGGAAACCGTAAAGGGT
TTTGCAAAGGAATCAACAGTTCCTTTCAGAGAAAGACTCAAAATTATGGTTGGTGTAGCC
AATCCTGAAGACCTTCATTTAAACCCCGCGGAGAAAAAGCTTTTACATGCATATAATGAA
AAACCAGTGCTTTCACGTCCTCAACATGCGTTCTATGAGGGAGACAGCTACTTCGAAATA
GACTTGGATGTTCATCGTTTCAGTTACATTTCCAGGAAAGGATTTGATGCATTCCGAGAA
CGGTTGAAACATGGAATTCTTGATCTTGGATTGACAATTCAGGCACAGAAGCAAGAGGAG
CTGCCAGAGAGAGTTTTGTGCTGTATTCAATTGAACAAAATTGATTTTGTGAATTGTGGC
CAAATACCTCAACTTATTATTCCTATTGATAATAATTGAGAGAGCTAGGGAAATAATTGT
AAATATTTTTGCAACAAGAAAAAAAAAACTAAATTCTGAAATGTAACAATTACATCAATT
TTTATTTGTATCAAGATTGACAAAATATCAAAATAGTTTAGAACTTCTTCAATGAAATAG
AAGTTGAATTTTCCCCTCTTGGTTATCTCAAATGAGAAATAACATTTATTCAATTCCATC