Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g011830.3.1
CDS Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

ATGAACGGAAATCAGAATGGGATATTAGGTCATTCAAATGGTTACAAGGAGGCAGATGCT
TTAGGTTTTCCTGTAAATGACTTCGGAAATACAAATGTCCACGACAATAGGGAAGACCCT
TTGGCGTGCGACAGAAAAGATGGGAATAAATTCTGGGAAGTTCCTGAACTCGATGACTCT
ATATTTTTTGATAACAACGATGAGATTAAGGCTTCAAATGTGAGGGACAATCATAATGTA
GATTTGTCCACGATAAACGGTGACAATAGAGGTGGAAATCCTTTCGCGTGTGATATTCCT
TCAAGTGAAACAAATGAAATTGTTGCTGCAAGTGTTACAGATGATCAAACCGGAAGCTTG
TCGAATATCATCCATACCAAGAGAGGTGGAAATCCATTTGAATGTGATACAAAAGATAGA
AATCAGCCATGGAATATTCCAGAATATGAGTCCCTCGATTTCCTTGATGACAAAGGAAAT
GAAACTATCGACTCTGATTCGCCTTTTACCTCTCACTCCGAGTTGTTTGAGAATAACAAA
CATTTTTATTCTGATAAAGGGGTCACCGATCACGAGCTTTCTGAATTGACAGTTTGCTAT
CGAGAGAACAACTTTAACATAGTTAAAGATATATGTATGGATGAGGGTGTACCTGCAGTA
GATAAAGTTCTAACCGAGAGCTGGAAAGATGATCAACTGAGCACGTCTGTTTCTGTTGAT
GCTGATGAAGAACATCAGAGCAACACAAAGAAAAGTGTCGATATGGGGTCGAGCATTGCA
ACTGTATCACAAGATTCATCTTGCGAAGATGCCAAGAACATTGCTGTGACTCATGGTGCA
GAAATAGAACCTACTGGAGCACCTATTCCAAACGATTTCAACCCGTCACTAGAGAATAAA
GCCAACAAAGATGCGGATAAGGATTCTTATCTCGAGGATTTGTTGATGATTTTTGGTTCA
AAATGTACAACAAACGGGAAAACTACTAATGCATCAGAAAAACCATCATCTCCTAATACC
GTTGTTCGTGTGGAAGAGTCCAATATAAAAACTTCTGATGGTGATCAATCTACACTGCAA
CCCGATCAGGTGCCTTTTGATCAAACTTTGAAAAGCCAAACTGCAATTTCTGCAGCTGAT
GAGTCAAACAACAACAAAGGTAATAGCAAGGAGGGAGCAGGAACTAATATTTTCGACTTC
AATCTCACCAAACCAGAATCAACAACAACCACGGAGGGAGGAGTCGAAAACTTGCCTGAA
GATTCTCACAAGCCAAAGGCTGTCTCCGTTCACAAGAACGGAAACTCAGATAACATTTCA
GCTTCTAGTCAAGTTCCTTTCGCTAATACTGCTGACAACGCGCACCAGCAACACCTTGAA
TCCCAAAACATGGCTAATGGACAAGGTCATTTTGCTGATGGAGAGGCAAGTTTTTCTGCA
GCAAGAGGTCCTATCTCAGGTTCCATCACTTACTCAGGGCCTATATCTTACTCCGGAAGC
CTATCTCTTCGATCCGAAAGCAGCACAACCAGCACCAGATCCTTTGCCTTCCCAGTCTTA
CAAAATGAATGGAATAGCAGTCCAGTAAGAATGGCGAAGGCGGAACGGAGGCGTTTAAGT
AAACAAAAAGGTTGGAAACAAGGCCTTCTGTGTTGTAGATTCTAA

Peptide Sequence

PEP ID

Solyc05g011830.3.1
PEP Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

MNGNQNGILGHSNGYKEADALGFPVNDFGNTNVHDNREDPLACDRKDGNKFWEVPELDDS
IFFDNNDEIKASNVRDNHNVDLSTINGDNRGGNPFACDIPSSETNEIVAASVTDDQTGSL
SNIIHTKRGGNPFECDTKDRNQPWNIPEYESLDFLDDKGNETIDSDSPFTSHSELFENNK
HFYSDKGVTDHELSELTVCYRENNFNIVKDICMDEGVPAVDKVLTESWKDDQLSTSVSVD
ADEEHQSNTKKSVDMGSSIATVSQDSSCEDAKNIAVTHGAEIEPTGAPIPNDFNPSLENK
ANKDADKDSYLEDLLMIFGSKCTTNGKTTNASEKPSSPNTVVRVEESNIKTSDGDQSTLQ
PDQVPFDQTLKSQTAISAADESNNNKGNSKEGAGTNIFDFNLTKPESTTTTEGGVENLPE
DSHKPKAVSVHKNGNSDNISASSQVPFANTADNAHQQHLESQNMANGQGHFADGEASFSA
ARGPISGSITYSGPISYSGSLSLRSESSTTSTRSFAFPVLQNEWNSSPVRMAKAERRRLS
KQKGWKQGLLCCRF*

Transcript Sequence

Transcript ID

Solyc05g011830.3.1
Transcript Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

TTGCTGGCTTCCCACTCTCTCTTATTTCTTCTTACTTGTTACTTAAAACTCTTTTCTGTC
ACATTCATTGCGTTTTCTAACTATACCCCTTTCTCTCTCTAAAATACTCAATGAAGCAAT
TCAAAACGGCATGATTTCTTGTCGTTTCATGAGCTTACTGTAGTATTATTCACCAACATA
TCCTCTTCTTCTTCTTCCCAACAACACAACAGTGAAACCCAGAGACAGAATTTTGTACTA
AAGGGATAAAGAGGAAAATTCTTTTGATTCACTTTTAGAAAGAGGTCTCTGAGCTGTTTT
CCTCCGCGACTACTACTTGATGTTTGCTTCACAGCTATTGAGACTTCTCGAGACTCTACC
AGCTGATACGAGCAGTGAAAGCCAATAATCATCCTCTGTTTAGTGATTCAACACTAGTCT
CTGTGCATGATTCTAAAACATTTGAATGCAACGACAGCGTCTTTGACACAGCTGAAGAGA
AGCCTACAATGAACGGAAATCAGAATGGGATATTAGGTCATTCAAATGGTTACAAGGAGG
CAGATGCTTTAGGTTTTCCTGTAAATGACTTCGGAAATACAAATGTCCACGACAATAGGG
AAGACCCTTTGGCGTGCGACAGAAAAGATGGGAATAAATTCTGGGAAGTTCCTGAACTCG
ATGACTCTATATTTTTTGATAACAACGATGAGATTAAGGCTTCAAATGTGAGGGACAATC
ATAATGTAGATTTGTCCACGATAAACGGTGACAATAGAGGTGGAAATCCTTTCGCGTGTG
ATATTCCTTCAAGTGAAACAAATGAAATTGTTGCTGCAAGTGTTACAGATGATCAAACCG
GAAGCTTGTCGAATATCATCCATACCAAGAGAGGTGGAAATCCATTTGAATGTGATACAA
AAGATAGAAATCAGCCATGGAATATTCCAGAATATGAGTCCCTCGATTTCCTTGATGACA
AAGGAAATGAAACTATCGACTCTGATTCGCCTTTTACCTCTCACTCCGAGTTGTTTGAGA
ATAACAAACATTTTTATTCTGATAAAGGGGTCACCGATCACGAGCTTTCTGAATTGACAG
TTTGCTATCGAGAGAACAACTTTAACATAGTTAAAGATATATGTATGGATGAGGGTGTAC
CTGCAGTAGATAAAGTTCTAACCGAGAGCTGGAAAGATGATCAACTGAGCACGTCTGTTT
CTGTTGATGCTGATGAAGAACATCAGAGCAACACAAAGAAAAGTGTCGATATGGGGTCGA
GCATTGCAACTGTATCACAAGATTCATCTTGCGAAGATGCCAAGAACATTGCTGTGACTC
ATGGTGCAGAAATAGAACCTACTGGAGCACCTATTCCAAACGATTTCAACCCGTCACTAG
AGAATAAAGCCAACAAAGATGCGGATAAGGATTCTTATCTCGAGGATTTGTTGATGATTT
TTGGTTCAAAATGTACAACAAACGGGAAAACTACTAATGCATCAGAAAAACCATCATCTC
CTAATACCGTTGTTCGTGTGGAAGAGTCCAATATAAAAACTTCTGATGGTGATCAATCTA
CACTGCAACCCGATCAGGTGCCTTTTGATCAAACTTTGAAAAGCCAAACTGCAATTTCTG
CAGCTGATGAGTCAAACAACAACAAAGGTAATAGCAAGGAGGGAGCAGGAACTAATATTT
TCGACTTCAATCTCACCAAACCAGAATCAACAACAACCACGGAGGGAGGAGTCGAAAACT
TGCCTGAAGATTCTCACAAGCCAAAGGCTGTCTCCGTTCACAAGAACGGAAACTCAGATA
ACATTTCAGCTTCTAGTCAAGTTCCTTTCGCTAATACTGCTGACAACGCGCACCAGCAAC
ACCTTGAATCCCAAAACATGGCTAATGGACAAGGTCATTTTGCTGATGGAGAGGCAAGTT
TTTCTGCAGCAAGAGGTCCTATCTCAGGTTCCATCACTTACTCAGGGCCTATATCTTACT
CCGGAAGCCTATCTCTTCGATCCGAAAGCAGCACAACCAGCACCAGATCCTTTGCCTTCC
CAGTCTTACAAAATGAATGGAATAGCAGTCCAGTAAGAATGGCGAAGGCGGAACGGAGGC
GTTTAAGTAAACAAAAAGGTTGGAAACAAGGCCTTCTGTGTTGTAGATTCTAAAATTCTT
GCTTCTTAGTTAAAGAATATACATAACAAAGACCTTAAATCTTGAATCTTTTGAGTATTG
TAAGTATGCATACATGTTGATATTCATTATTCTCTTAGGGGTGGCATGTTTTAGGGGAAG
TTACACATTTGGTCGCGTGGCAAAAAATAATTACATCCCCTATCCAATATACATATATTA
TACTATGTGTATATTATATATCTATCGGCTATTATTTTGTGTGGGCGGCTATTTATGTCA
ATTTCCCTTTGTTCTATTAAAGACATGGAAGGTTACTGATGTAAAACCCTTTTCTTTTTT
TTTTTACATTTTTGTTCTTATACAGTATATCATGTATACTCATGTTTAATGTCCCTTTTT
TTTTCTTCTATGATTAATTGTTGTGAGAGATTTGCCCATTGAGCTAAAATATATGCAATA
TATTTGGTTTTTATTTATT