Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g010400.3.1
CDS Infomation	NSP-interacting kinase 1 (AHRD V3.3 *** AT5G16000.1)
Sequence	ATGGAAACAAGAAGTGTTTTTGGTTTTGTGGTGTTGTTCAGTTTCTTGGTTTACTCTAAT GCTATGCTTACTCCTGGTGGTGTTAATTATGAAGTGCAAGCTTTAATGGAGATCAAGAAC TCATTACATGATCCACTTGGTGTTTTGAATTGGGATGAAAGTTCTGTTGATCCATGTAGC TGGAATACGATCAGTTGTTCAAGTGATAAATTTGTCATTGGCTTGGCTTGTCCAAGCCAA AGTTTGTCTGGGAAAATATCACCATACATTCATAACTTGACTCACTTGAATCTACTGCTT CTGCAGAGCAATAATATAACAGGACCAATTCCAACTGAACTTGGAATGCTTCAGAAACTT AATACAATTGATCTTTCTGATAATCAACTCACTGGGAAAATCCCTTCATCTTTAGCTCAA TTGAAAAGCCTTCAATACTTGAGACTAAACAATAATAGTCTTACTGGAGCTGTTCCCTTG GAATTTTCCAATATGACTCAACTTACTCTTCTAGACTTGTCTTTTAATAATTTGAGTGGT CCTGTGCCAAGGCTTCTAGCTAAAACATTCAACCTTTTGGGAAATCCTATTATATGTGCA ACTGGAAAAGAACCAGAATGCAATGGGACAACAACATCCATGCCTTTGCCCTTCACTTTG AACAACTCACAAAATGCTCAGCCTTTTGGAAGATCTAAAACTCACAAAATTGCCTTAGCC TTTGGGACAAGTCTTGGATGCATCTGCCTACTAATTATTGGGTTTGGTATCTTTCTGTGG TGGAGACAAAAGCATAACAAGCAAATTTTCTTTGACATCAATGAACAACATCATGAACAA GTGTGTTTGGGAAACTTGAGGAGGTTCCAATTTAGGGAACTTCAAGTTGCCACAAACAAC TTCAGTAACAAGAAGATACTGGGAAAAGGCGGTTTTGGAAACGTGTACAAAGGTTGTCTT AGTGATGGCACAATTGTTGCTGTAAAAAGGCTCAAAGATGGAAATGCAATCGGAGGAGAC AAACAGTTCCAAACAGAAGTTGAAATGATCAGCTTGGCAGTGCATCGCAATCTCCTACGT TTGTATGGGTTCTCCATGACACCAACTGAAAGGCTTCTGGTTTATCCTTACATGTCTAAT GGAAGCGTTGCTTCTCGTCTCAAAGCCAAGCCACCATTGGACTGGACTACAAGAAAAAGA ATTGCATTAGGAGCTGCGAGAGGTTTACTATATCTACATGAGCAGTGTGATCCAAAGATT ATCCACAGGGATGTGAAGGCAGCAAATATATTGCTCGACGATGACTGTGAGGCTGTCGTG GGAGATTTTGGATTGGCAAAGCTATTGGATCATCGCGATTCACATGTCACAACTGCAGTT AGGGGAACAGTAGGACATATAGCTCCTGAGTATCTCTCTACAGGACAGTCCTCTGATAAA ACAGATGTTTTCGGGTTTGGAATTCTCCTGCTAGAGTTGATATCTGGCCAGAGAGCTCTT GAATTTGGTAAAGCAGCAAATCAGAAAGGTGTTATGCTTGATTGGGTGAAGAAGATTCAC CTGGAGAAAAAGCTTGATTTGCTGGTGAGCAAGGACTTAAAGGACAAATATGATCGGATC GAGCTTGAGGAAATGGTACAAGTAGCTCTAATATGCACTCAGTATCACCCTAGTCATAGA CCAAAAATGTCAGAAGTGGTAAGAATGCTCGAAGGAGACGGACTTGCAGAGAAATGGGAA GCTTCACAAAGAGCAGAATCTACGCGATGCAGAGCCAATGAGTTCTCGTCTTCAGAAAGA TATTCTGATCTTACTGATGATTCTTCATTGCTTGTTCAAGCAATGGAATTATCAGGACCA AGGTGA

Peptide Sequence

PEP ID	Solyc05g010400.3.1
PEP Infomation	NSP-interacting kinase 1 (AHRD V3.3 *** AT5G16000.1)
Sequence	METRSVFGFVVLFSFLVYSNAMLTPGGVNYEVQALMEIKNSLHDPLGVLNWDESSVDPCS WNTISCSSDKFVIGLACPSQSLSGKISPYIHNLTHLNLLLLQSNNITGPIPTELGMLQKL NTIDLSDNQLTGKIPSSLAQLKSLQYLRLNNNSLTGAVPLEFSNMTQLTLLDLSFNNLSG PVPRLLAKTFNLLGNPIICATGKEPECNGTTTSMPLPFTLNNSQNAQPFGRSKTHKIALA FGTSLGCICLLIIGFGIFLWWRQKHNKQIFFDINEQHHEQVCLGNLRRFQFRELQVATNN FSNKKILGKGGFGNVYKGCLSDGTIVAVKRLKDGNAIGGDKQFQTEVEMISLAVHRNLLR LYGFSMTPTERLLVYPYMSNGSVASRLKAKPPLDWTTRKRIALGAARGLLYLHEQCDPKI IHRDVKAANILLDDDCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSDK TDVFGFGILLLELISGQRALEFGKAANQKGVMLDWVKKIHLEKKLDLLVSKDLKDKYDRI ELEEMVQVALICTQYHPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRCRANEFSSSER YSDLTDDSSLLVQAMELSGPR*

Transcript Sequence

Transcript ID	Solyc05g010400.3.1
Transcript Infomation	NSP-interacting kinase 1 (AHRD V3.3 *** AT5G16000.1)
Sequence	AATTTGTATGCCAAGCAAAAGATATTCTCTTTGGATATACTCGAAATAATAAAAATCAAT CAATTCTTTTCCCTCTAATGAATTCATTGATTATTTTTTCACATTTGTATCCTAGGGAAA TACTATCTTATGATACTGAGAAATTATTATATTTTAGTATATGTCTGCACATAAATCCAT GAATTGTTTCTCCTAAAATAACAATTTTTTTTTTTACAAAATTTCAGAGGGAATATTAGA TTCCTTGTTTGTTTAATTTAAAGCAATCCCAATAAGCATGTCCTACTTACCTCAACTTAC CACATGACCCACAAAAAGAATTTTGCACAATAAAAATATTTAATAATATTTATCATTTTA GTGATTAACAGTCATATTCTCAAATACCCTTTAGCATTTCTTGAAAAAATAAAATTTTGA AAAAAAATTCTTAACCAATGAATGATTAAAGGTATTTTCCTGTTTTTTCAATACCTTTAT GAATTTTTCCTTTTTATATATTTGTTGTTTGCTTTACTGAACTAAAGTGGCTGGCATGTT GTTTTTGCTCTCACTTTTTTACCACCAAAAACCTCTGTTTATTTTTTTTTTTGTTTTTTT GAAAGAGTCTGACATAAAGCTGTTTGAAACTTTGAGTGAGTGAGTGAGTGTAAGTTTTCT GTAAAAATGAAGCAGCAAAGCATGAGGAATTGTACCATTTTCCAATGATTTGTTCTTTTT TATTTTTATTTTTTGAATAAAAACTAAGTCCCAAATTCTTCTTTTATAAAAAAAGATCTC ATTTTTACTCTTTGTTTAGCTGTTTTCTTGAAGTTTTAAGACAAATGGAAACAAGAAGTG TTTTTGGTTTTGTGGTGTTGTTCAGTTTCTTGGTTTACTCTAATGCTATGCTTACTCCTG GTGGTGTTAATTATGAAGTGCAAGCTTTAATGGAGATCAAGAACTCATTACATGATCCAC TTGGTGTTTTGAATTGGGATGAAAGTTCTGTTGATCCATGTAGCTGGAATACGATCAGTT GTTCAAGTGATAAATTTGTCATTGGCTTGGCTTGTCCAAGCCAAAGTTTGTCTGGGAAAA TATCACCATACATTCATAACTTGACTCACTTGAATCTACTGCTTCTGCAGAGCAATAATA TAACAGGACCAATTCCAACTGAACTTGGAATGCTTCAGAAACTTAATACAATTGATCTTT CTGATAATCAACTCACTGGGAAAATCCCTTCATCTTTAGCTCAATTGAAAAGCCTTCAAT ACTTGAGACTAAACAATAATAGTCTTACTGGAGCTGTTCCCTTGGAATTTTCCAATATGA CTCAACTTACTCTTCTAGACTTGTCTTTTAATAATTTGAGTGGTCCTGTGCCAAGGCTTC TAGCTAAAACATTCAACCTTTTGGGAAATCCTATTATATGTGCAACTGGAAAAGAACCAG AATGCAATGGGACAACAACATCCATGCCTTTGCCCTTCACTTTGAACAACTCACAAAATG CTCAGCCTTTTGGAAGATCTAAAACTCACAAAATTGCCTTAGCCTTTGGGACAAGTCTTG GATGCATCTGCCTACTAATTATTGGGTTTGGTATCTTTCTGTGGTGGAGACAAAAGCATA ACAAGCAAATTTTCTTTGACATCAATGAACAACATCATGAACAAGTGTGTTTGGGAAACT TGAGGAGGTTCCAATTTAGGGAACTTCAAGTTGCCACAAACAACTTCAGTAACAAGAAGA TACTGGGAAAAGGCGGTTTTGGAAACGTGTACAAAGGTTGTCTTAGTGATGGCACAATTG TTGCTGTAAAAAGGCTCAAAGATGGAAATGCAATCGGAGGAGACAAACAGTTCCAAACAG AAGTTGAAATGATCAGCTTGGCAGTGCATCGCAATCTCCTACGTTTGTATGGGTTCTCCA TGACACCAACTGAAAGGCTTCTGGTTTATCCTTACATGTCTAATGGAAGCGTTGCTTCTC GTCTCAAAGCCAAGCCACCATTGGACTGGACTACAAGAAAAAGAATTGCATTAGGAGCTG CGAGAGGTTTACTATATCTACATGAGCAGTGTGATCCAAAGATTATCCACAGGGATGTGA AGGCAGCAAATATATTGCTCGACGATGACTGTGAGGCTGTCGTGGGAGATTTTGGATTGG CAAAGCTATTGGATCATCGCGATTCACATGTCACAACTGCAGTTAGGGGAACAGTAGGAC ATATAGCTCCTGAGTATCTCTCTACAGGACAGTCCTCTGATAAAACAGATGTTTTCGGGT TTGGAATTCTCCTGCTAGAGTTGATATCTGGCCAGAGAGCTCTTGAATTTGGTAAAGCAG CAAATCAGAAAGGTGTTATGCTTGATTGGGTGAAGAAGATTCACCTGGAGAAAAAGCTTG ATTTGCTGGTGAGCAAGGACTTAAAGGACAAATATGATCGGATCGAGCTTGAGGAAATGG TACAAGTAGCTCTAATATGCACTCAGTATCACCCTAGTCATAGACCAAAAATGTCAGAAG TGGTAAGAATGCTCGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAAAGAGCAG AATCTACGCGATGCAGAGCCAATGAGTTCTCGTCTTCAGAAAGATATTCTGATCTTACTG ATGATTCTTCATTGCTTGTTCAAGCAATGGAATTATCAGGACCAAGGTGA