Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g010180.3.1
CDS Infomation

Carotenoid isomerase (AHRD V3.3 *** A0A077EPD5_TOBAC)
Sequence

ATGGCGTTGAGATTACTTCCATTTTCTCCATTCTTCAATTTCAGCTCATCGAATCGAAAA
CGTAGATTTTCGATGCGTAGTGAAGTTTCTACCTCTGCTACTCTTCCTTCCAAACAATCC
GTCTCAGGCGAGCCAGAAGCAGATATCGTTGTTATTGGGAGCGGTATAGGTGGGCTATGT
TGTGCTGGACTTCTTGCTAGGTATGGACAAGATGTTTTAGTGCTCGAAAGCCATGATGTA
GCTGGAGGTGCAGCTCACTCTTTTGATGTTAAAGGGTACAAATTCGACTCTGGTCCATCG
CTGTTCTCTGGTTTCCAATCAAGAGGTCCTCAGGCTAATCCATTAGCACAGGTTCTTGAT
GCATTAGGTGAATCGATTCCCTGTGTCAATTATGACTCGTGGATGGTATATGTACCTGAA
GGTGAATTCCTGTCACGCATTGGCCCAACAGAGTTTTTTAAGGATCTAGAGAAGTATGCA
GGACCAGATTCAGTGAGAGAGTGGCGGAAACTTCTTGACGCGATACTTCCAATCTCAGCA
GCTGCAATGGCTCTGCCTCCACTATCTATCCGAGGGGACTTGGGCGTTCTTTCGACTGCT
GCAGCTAGATATGCACCTTCTCTCTTAAAATCTTTTGCTCAAATGGGACCTCAAGGAGCC
CTTGGTGCTACCAAGCTTCTCAGACCCTTTTCAGATATCATTGATTCTTTGGGGATAAAA
GACCCTTTTATACGAAATTGGCTGGATCTCCTAGCTTTCTTGCTTGCCGGGGTGAAAACT
AACGGCATACTCTCAGCAGAAATGGTGTACATGTTCTCAGAATGGTATAAGCCAGGTTGT
ACTCTAGAATATCCACTTCATGGAAGTGGAGCAATTGTTGAGGCTCTTGTTCGAGGATTA
CAAAAGTTTGGTGGACGGATTTCTCTCAAGAGTCACGTAGAAAACATAGTTGTTGAAAAG
GGTCGAGCTGTTGGAGTGAAACTAAGAGGTGGCCAATTTGTCCGTGCTAGGAAGGCTGTA
GTCAGCAATGCATCTATGTGGGATACACTGAGTTTATTGCCTCCAGAAGCTGTCCCGAAG
TCATACCAGGACGGGATTAAAACGACTCAACAGTGTGAATCATTCATGCATCTGCATTTG
GGTTTTGATGCAGAGGGTATATCTGATGACCTGGGAATCCATCATATAGTAGTTAATGAC
TGGGACCGAGGGGTTGATGCTGATCAGAACGTTGTACTGATATCTGTCCCGAGTGTGCTT
AGTCCAGATCTTGCTCCACCTGGAAAGCACGTTTTGCATGCTTATACCCCCGGAACTGAG
CCATTTGAAATTTGGGAAGGTCTTGATCGCCGAAGCAATGAGTACAAAAACCTCAAGGCT
GAAAGATCCGAGGTAATGTGGAAGGCTGTAGAGAAAGCACTTGGGCCAGGATTTAATCGC
GATAAGTGTGAGGTGAAATTAGTGGGAACTCCGTTGACACATCAAAGATTTCTTAGAAGA
AACAGAGGGACCTATGGGCCAGCTATATTAGCAGGTAAAGGAACGTTTCCTGGACACTCA
ACACCAATTCCACAACTCATGTGCTGTGGAGACTCTACTTTTCCTGGCATTGGAGTTCCT
GCAGTTGCTGCTAGTGGTGCCATTGTCGCGAATTCATTGGTTTCTGTGTCAGAACATTCG
CGCCTTCTTGATGCTATAGGGATATGA

Peptide Sequence

PEP ID

Solyc05g010180.3.1
PEP Infomation

Carotenoid isomerase (AHRD V3.3 *** A0A077EPD5_TOBAC)
Sequence

MALRLLPFSPFFNFSSSNRKRRFSMRSEVSTSATLPSKQSVSGEPEADIVVIGSGIGGLC
CAGLLARYGQDVLVLESHDVAGGAAHSFDVKGYKFDSGPSLFSGFQSRGPQANPLAQVLD
ALGESIPCVNYDSWMVYVPEGEFLSRIGPTEFFKDLEKYAGPDSVREWRKLLDAILPISA
AAMALPPLSIRGDLGVLSTAAARYAPSLLKSFAQMGPQGALGATKLLRPFSDIIDSLGIK
DPFIRNWLDLLAFLLAGVKTNGILSAEMVYMFSEWYKPGCTLEYPLHGSGAIVEALVRGL
QKFGGRISLKSHVENIVVEKGRAVGVKLRGGQFVRARKAVVSNASMWDTLSLLPPEAVPK
SYQDGIKTTQQCESFMHLHLGFDAEGISDDLGIHHIVVNDWDRGVDADQNVVLISVPSVL
SPDLAPPGKHVLHAYTPGTEPFEIWEGLDRRSNEYKNLKAERSEVMWKAVEKALGPGFNR
DKCEVKLVGTPLTHQRFLRRNRGTYGPAILAGKGTFPGHSTPIPQLMCCGDSTFPGIGVP
AVAASGAIVANSLVSVSEHSRLLDAIGI*

Transcript Sequence

Transcript ID

Solyc05g010180.3.1
Transcript Infomation

Carotenoid isomerase (AHRD V3.3 *** A0A077EPD5_TOBAC)
Sequence

TAACAGTATAAATTTTGTGCTTTAGCCAAATTTAGCTGCAAAGATTCAAAATTTTCATAA
TCAATGGCGTTGAGATTACTTCCATTTTCTCCATTCTTCAATTTCAGCTCATCGAATCGA
AAACGTAGATTTTCGATGCGTAGTGAAGTTTCTACCTCTGCTACTCTTCCTTCCAAACAA
TCCGTCTCAGGCGAGCCAGAAGCAGATATCGTTGTTATTGGGAGCGGTATAGGTGGGCTA
TGTTGTGCTGGACTTCTTGCTAGGTATGGACAAGATGTTTTAGTGCTCGAAAGCCATGAT
GTAGCTGGAGGTGCAGCTCACTCTTTTGATGTTAAAGGGTACAAATTCGACTCTGGTCCA
TCGCTGTTCTCTGGTTTCCAATCAAGAGGTCCTCAGGCTAATCCATTAGCACAGGTTCTT
GATGCATTAGGTGAATCGATTCCCTGTGTCAATTATGACTCGTGGATGGTATATGTACCT
GAAGGTGAATTCCTGTCACGCATTGGCCCAACAGAGTTTTTTAAGGATCTAGAGAAGTAT
GCAGGACCAGATTCAGTGAGAGAGTGGCGGAAACTTCTTGACGCGATACTTCCAATCTCA
GCAGCTGCAATGGCTCTGCCTCCACTATCTATCCGAGGGGACTTGGGCGTTCTTTCGACT
GCTGCAGCTAGATATGCACCTTCTCTCTTAAAATCTTTTGCTCAAATGGGACCTCAAGGA
GCCCTTGGTGCTACCAAGCTTCTCAGACCCTTTTCAGATATCATTGATTCTTTGGGGATA
AAAGACCCTTTTATACGAAATTGGCTGGATCTCCTAGCTTTCTTGCTTGCCGGGGTGAAA
ACTAACGGCATACTCTCAGCAGAAATGGTGTACATGTTCTCAGAATGGTATAAGCCAGGT
TGTACTCTAGAATATCCACTTCATGGAAGTGGAGCAATTGTTGAGGCTCTTGTTCGAGGA
TTACAAAAGTTTGGTGGACGGATTTCTCTCAAGAGTCACGTAGAAAACATAGTTGTTGAA
AAGGGTCGAGCTGTTGGAGTGAAACTAAGAGGTGGCCAATTTGTCCGTGCTAGGAAGGCT
GTAGTCAGCAATGCATCTATGTGGGATACACTGAGTTTATTGCCTCCAGAAGCTGTCCCG
AAGTCATACCAGGACGGGATTAAAACGACTCAACAGTGTGAATCATTCATGCATCTGCAT
TTGGGTTTTGATGCAGAGGGTATATCTGATGACCTGGGAATCCATCATATAGTAGTTAAT
GACTGGGACCGAGGGGTTGATGCTGATCAGAACGTTGTACTGATATCTGTCCCGAGTGTG
CTTAGTCCAGATCTTGCTCCACCTGGAAAGCACGTTTTGCATGCTTATACCCCCGGAACT
GAGCCATTTGAAATTTGGGAAGGTCTTGATCGCCGAAGCAATGAGTACAAAAACCTCAAG
GCTGAAAGATCCGAGGTAATGTGGAAGGCTGTAGAGAAAGCACTTGGGCCAGGATTTAAT
CGCGATAAGTGTGAGGTGAAATTAGTGGGAACTCCGTTGACACATCAAAGATTTCTTAGA
AGAAACAGAGGGACCTATGGGCCAGCTATATTAGCAGGTAAAGGAACGTTTCCTGGACAC
TCAACACCAATTCCACAACTCATGTGCTGTGGAGACTCTACTTTTCCTGGCATTGGAGTT
CCTGCAGTTGCTGCTAGTGGTGCCATTGTCGCGAATTCATTGGTTTCTGTGTCAGAACAT
TCGCGCCTTCTTGATGCTATAGGGATATGATCGAGGAGACTCTCGAGACTGTTAAGTTTT
TTTTCTTAGTACTGAAAAATTTGATTCATTCTGTATAAATCCTTACATTGTTTATACTCT
GTACAATTCATCCTACCTTTGTTTACATTATTGAAAATATATATATTCTACTTCAGCTTG
TACAATTTGTTTAATGATTGAAAAGAAGTGGCAACATGGGTTCCAAGCGATTGCTTTAGT
GGCCTAGGGGTTAAAACGATCTTGCTTGGCTGGTATGTTCTTTCCGCGTATATGTTTCAC
TCATTCATTTTTCTTTTACACCAGAACATGCTTATATTATACTCAGTCTGTTACGTGTAT
TTATATTTCGAGATGGTAACATGTTTGTATAAGAAGCAAAACTGGTATGTAGTAATG