Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g009940.3.1
CDS Infomation

oxidoreductase/transition metal ion-binding protein (AHRD V3.3 *-* AT5G52410.3)
Sequence

ATGTGTTCTTCTATAATCCCATCTTCTCTTATCTTTACACCTAAATCCCCTTTCATCTAT
AGTCAAGATTTGATTTTTACCTCATACCCATTTCACCTTAGGACTAGAATTCCTAAGTTC
TCCCTTTCTGCTTCAGTTTCAGAAAAAGTTGCAGCAGTTTCTTGGGGTGTTTCTGATCCA
AATGCAATTGATGAGTATAATGGTTGGGACTTTGTTGAACCTCCAGTTGAAAAGAAGAAG
AAAAAGGGTTTGTCAAAATTTTTGGTTATTGGCATGTCAGTGTCTCTTGCTGCTGGGCTT
GGTGTTGCTTCCTACTTTTCACTATACCAGAAAGGATTCAAATTTCAATTTAGTGGGCCG
CTCCATGAGTCACATGATAGTTTAGCATCTAATGAGGCTTCTAATAAGGGAGAAGATGGC
GAAACGGTTGATTTGTCAATGGGAAGTGATGAGATTTCTGAAACGGTGGAGGGAGGTTCT
GATTTCGATGATAAAAATGTTGTCTTGGAGACACACAATGTTTCAACTAAAGGAGTAACT
AGAGGAGTACTGGGACGAATTACAATTCCCTTTGCTGTAGATTCTACTCAAGAAGAAGCT
CTTTTTATGTTGAAGAAACTCAAGATCATTGAAGATGATGTTAAAGCAGATGAACTATGT
TCAAGGAGGGAATATGCAAGATGGTTAATTAAAGCAAATACACAACTAGAAAGGAGTAGA
AAGCATCGGATAGTTCCATCAGTTGTGCTTTCTGGCTCTACAATTGCTGCCTTTGATGAT
GTGGGTGTTGAAGACCCTGATTTTGCGACCATTCAATCCCTAGCTGAGGCTGGTATTATT
CCTAGCAAGCTGCCAGATAAGAAGTTCGCTTCCACTCCAAATGTTTCAGAAGATCAGGGC
GTCTGTTTTTCCCCCGATAGATTTTTGTCTCGCCAAGATCTGATTAGCTGGAAAGCCAAA
ATAGAGTATGAAATCATGCCAGTGATAGATAAAGAGATATCAAGGAAGAACATAGCCTTT
CTGGATGTAAGGGACATCAATTCTGAAGCTTTGGTGGAACTTTTTGTGGATTTACGGGCT
GGTGAACAGAGCATTCTTCGGAGAGTTTTTGGACAGGCGAAACGATTTCAGCCTGATAAA
CCATCCACGAAGGCTCAGGCAGCTGTTTCGCTGACAAGTGGGAGAATGGAAGAATATATA
CAAAGTGAGCTGGCAAAACTTGAAGCAGAAAATTTATCGAGACTTATGACAATGGAAGAA
ATAAAGTCTGACCTACTTGATAGAGGAGAAATACAAAGGATTTGGGAGAGTAATATGGAA
GTAGAAAGAAGTCGTGGTTTAGAGGTAGAAAGTGCTTATCTGTCTTCTATTGGAGATTTA
GAACAGGAAAAAATTGTACATGAGAATGCTCGAGCTGAGCTTCTGAAGCAGAAGGCAGCT
CTAGACTGTCAGAAGCAGCTACTTTCTAGTCTCAAGGAAGAGGTTGATGAGATGTCCGAA
AAGCTTGCATGCGAGAAGTTTAAGCATGTGGATGAGCAGTGTGATTTAAGTGGTATGATT
CATGATTTGCAGGTTAAGCATGAAGCTTTGCTTGACAAAAAATCTATGTTGGAAGCTGAG
AGTGAAGCTTTGCGAAAACTGAGATCATGGGTAGAGGATGAAGCAAGAAGAAGTCAAGCT
CGTGCTAAAGTTCTCGAGGAGGTTGAACGAAGGTGGAGATGGGAGGAGCAATAG

Peptide Sequence

PEP ID

Solyc05g009940.3.1
PEP Infomation

oxidoreductase/transition metal ion-binding protein (AHRD V3.3 *-* AT5G52410.3)
Sequence

MCSSIIPSSLIFTPKSPFIYSQDLIFTSYPFHLRTRIPKFSLSASVSEKVAAVSWGVSDP
NAIDEYNGWDFVEPPVEKKKKKGLSKFLVIGMSVSLAAGLGVASYFSLYQKGFKFQFSGP
LHESHDSLASNEASNKGEDGETVDLSMGSDEISETVEGGSDFDDKNVVLETHNVSTKGVT
RGVLGRITIPFAVDSTQEEALFMLKKLKIIEDDVKADELCSRREYARWLIKANTQLERSR
KHRIVPSVVLSGSTIAAFDDVGVEDPDFATIQSLAEAGIIPSKLPDKKFASTPNVSEDQG
VCFSPDRFLSRQDLISWKAKIEYEIMPVIDKEISRKNIAFLDVRDINSEALVELFVDLRA
GEQSILRRVFGQAKRFQPDKPSTKAQAAVSLTSGRMEEYIQSELAKLEAENLSRLMTMEE
IKSDLLDRGEIQRIWESNMEVERSRGLEVESAYLSSIGDLEQEKIVHENARAELLKQKAA
LDCQKQLLSSLKEEVDEMSEKLACEKFKHVDEQCDLSGMIHDLQVKHEALLDKKSMLEAE
SEALRKLRSWVEDEARRSQARAKVLEEVERRWRWEEQ*

Transcript Sequence

Transcript ID

Solyc05g009940.3.1
Transcript Infomation

oxidoreductase/transition metal ion-binding protein (AHRD V3.3 *-* AT5G52410.3)
Sequence

GAAAGCACTCTTTTGAGAGTCCATTGATAATAAGAGCATCAAAAGTTAGGTTTCCATTGA
TGCTCAAAGGATGAAGATGAACTTCAACTCCAAAAATTCCCTTTTTCCATTACCCCTTTG
AATCTAAAACCCTATTAACACATTACTATTACAACCCTAAAACCCTAAAAAAATAATAAT
CAAGAAATGTGTTCTTCTATAATCCCATCTTCTCTTATCTTTACACCTAAATCCCCTTTC
ATCTATAGTCAAGATTTGATTTTTACCTCATACCCATTTCACCTTAGGACTAGAATTCCT
AAGTTCTCCCTTTCTGCTTCAGTTTCAGAAAAAGTTGCAGCAGTTTCTTGGGGTGTTTCT
GATCCAAATGCAATTGATGAGTATAATGGTTGGGACTTTGTTGAACCTCCAGTTGAAAAG
AAGAAGAAAAAGGGTTTGTCAAAATTTTTGGTTATTGGCATGTCAGTGTCTCTTGCTGCT
GGGCTTGGTGTTGCTTCCTACTTTTCACTATACCAGAAAGGATTCAAATTTCAATTTAGT
GGGCCGCTCCATGAGTCACATGATAGTTTAGCATCTAATGAGGCTTCTAATAAGGGAGAA
GATGGCGAAACGGTTGATTTGTCAATGGGAAGTGATGAGATTTCTGAAACGGTGGAGGGA
GGTTCTGATTTCGATGATAAAAATGTTGTCTTGGAGACACACAATGTTTCAACTAAAGGA
GTAACTAGAGGAGTACTGGGACGAATTACAATTCCCTTTGCTGTAGATTCTACTCAAGAA
GAAGCTCTTTTTATGTTGAAGAAACTCAAGATCATTGAAGATGATGTTAAAGCAGATGAA
CTATGTTCAAGGAGGGAATATGCAAGATGGTTAATTAAAGCAAATACACAACTAGAAAGG
AGTAGAAAGCATCGGATAGTTCCATCAGTTGTGCTTTCTGGCTCTACAATTGCTGCCTTT
GATGATGTGGGTGTTGAAGACCCTGATTTTGCGACCATTCAATCCCTAGCTGAGGCTGGT
ATTATTCCTAGCAAGCTGCCAGATAAGAAGTTCGCTTCCACTCCAAATGTTTCAGAAGAT
CAGGGCGTCTGTTTTTCCCCCGATAGATTTTTGTCTCGCCAAGATCTGATTAGCTGGAAA
GCCAAAATAGAGTATGAAATCATGCCAGTGATAGATAAAGAGATATCAAGGAAGAACATA
GCCTTTCTGGATGTAAGGGACATCAATTCTGAAGCTTTGGTGGAACTTTTTGTGGATTTA
CGGGCTGGTGAACAGAGCATTCTTCGGAGAGTTTTTGGACAGGCGAAACGATTTCAGCCT
GATAAACCATCCACGAAGGCTCAGGCAGCTGTTTCGCTGACAAGTGGGAGAATGGAAGAA
TATATACAAAGTGAGCTGGCAAAACTTGAAGCAGAAAATTTATCGAGACTTATGACAATG
GAAGAAATAAAGTCTGACCTACTTGATAGAGGAGAAATACAAAGGATTTGGGAGAGTAAT
ATGGAAGTAGAAAGAAGTCGTGGTTTAGAGGTAGAAAGTGCTTATCTGTCTTCTATTGGA
GATTTAGAACAGGAAAAAATTGTACATGAGAATGCTCGAGCTGAGCTTCTGAAGCAGAAG
GCAGCTCTAGACTGTCAGAAGCAGCTACTTTCTAGTCTCAAGGAAGAGGTTGATGAGATG
TCCGAAAAGCTTGCATGCGAGAAGTTTAAGCATGTGGATGAGCAGTGTGATTTAAGTGGT
ATGATTCATGATTTGCAGGTTAAGCATGAAGCTTTGCTTGACAAAAAATCTATGTTGGAA
GCTGAGAGTGAAGCTTTGCGAAAACTGAGATCATGGGTAGAGGATGAAGCAAGAAGAAGT
CAAGCTCGTGCTAAAGTTCTCGAGGAGGTTGAACGAAGGTGGAGATGGGAGGAGCAATAG
GAAAAAAGTTTTCCTATAAGTTAAATAATCCATCTGTTTTGATGTACATTTTCTCATTGT
CATGATCAGTTCTCTTCTTAAATATTTTCTTGGTAGCATCTTGTAAACTATATAAGAGCT
GTTGATCTCTGTCATTAGCAGAAAGCAATTGAAGAGTAACTTTTTTTGTTGTATTTTGAA
GAATGAATTGCTTTATTAACAAAGTGAACCTCTTGAGTTCCAATCTATTTGCAGGGACCT
AATAGCTTTACATCCAAACTTATTTTT