Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g009930.3.1
CDS Infomation	Hydroxyproline-rich glycoprotein family protein (AHRD V3.3 *** AT3G25690.6)
Sequence	ATGATAGTTAGGGTAGGTTTCTTGGTTGCTGCTTCTATAGCTGCTTATGCAGTTAAGCAG ATAAATGTAAAACCTTCAAAGCCATCATTAGAAAATGGTGAACCATTGCTTGAACAACGA GGGGACGAAGGGGATGAAAAGGAGCAGCTTTTGTATTCGACGGATGGCCTCAAAGAAGTG GTTGATGAGGAAGAAGAGAAAGAAGAAGTTAAATTAATCAATGGAATTATAAATCCAGCA CAGGGTAACCAGATTGATCTTGATGATGATCTTTTCCCTGAATTTGAAGATCTTTTATCC GGGGAGATTGAATTTCCGTTACCAAGTGACAAGTATGATACAGGAAGAGAAGAGAGAGAG AGGGTTTACCAAACTGAGATGGCCTACAACGCGAATGAACTTGAAAGATTGCGAAACCTT GTTAAGGAACTTGAGGAAAGGGAGGTGAAGCTTGAAGGGGAGTTGCTTGAGTATTATGGT TTGAAGGAACAAGAGTCGGATGTCCTCGAATTACAAAAGCAGCTCAAGATTAAGGCTGTT GAGATTGACATGCTCAACATCACGATAAATACGTTACAGGCTGAGAAACAAAAGCTTCAA GAGGAGGTTTTTCATGGAACTACTGCTAGGAAAGATCTAGAAGCTGCTAGAAGCAAGATT AAGGAGCTGCAAAGGCAGATGCAACTCGAAGCTAACCAAACGAAAGCTCAGTTGTTGTTG CTAAAACAACATGTCACTGAACTTCAAGAAAAGGAAGAGGAAGCTTTCAAGAGAGATTCC GAGGTTGACAAGAAGCTTAAACTTGTGAAGGAGTTGGAAGTGGAGGTCATGGAACTTAAG AGGAAGAACAAAGAACTTCAGCACGAAAAGAGAGAGTTGGTTATTAAATTGGATGCTGCT GAATCTAAAATAGCGAAGTTGTCTAATATGACGGAGAATGAAATGGTTGCTCAGGTGAGG GAAGAAGTAACTAATTTGAAGCATACAAATGATGATCTTCTAAAACAAGTAGAAGGACTT CAAATGAACAGATTCAGTGAAGTTGAAGAGCTAGTGTATCTTCGTTGGGTCAACGCATGC TTAAGATTTGAACTTCGGAACTACCAAACACCTCAAGGAAAAGTATCCGCTCGTGATCTC AGCAAAAGCCTGAGCCCAAAATCTCAGCACAAGGCCAAACAGTTGATGTTAGAATATGCA GGTTCTGAACGAGGCCAAGGAGATACAGATCTCGAAAGCAATTTTTCTCAGCCATCTTCT CCCGGTAGTGAAGACTTTGATAATGCTTCTATAGACAGTTCCACTAGCAGATTTAGTACT TTCAGTAAAAAGCCCAACTTAATCCAGAAGCTGAAGAAATGGGGCAGCAGAGGTGGTAAA GACGATTCTAGTATTATGTCTTCACCAGCAAGATCTCTTGGAGGAGCATCTCCTGGTAGG ATGAGTATGAGTGTAAGACCAAGGGGTCCTCTGGAATCTCTAATGCTTAGGAACGCGGGT GACGGTGTAGCCATCACTAGTTTTGGAACAGCTGAGGAATACGATTCCCCAGAAACACCA AAGCTTCCACCGATTAGGACTCAAGAATCTTCTGCTGAGACACTGAATTCAGTTGCATCA TCGTTTACTCTAATGTCAAAATCGGTGGAAGGAGTTCTAGATGAGAAGTATCCGGCATTC AAAGATAGGCATAAGCTGGCAGTAGAACGAGAGAAGACAATTAAGGCTAAAGCTGAGCAG GCAAGAGCAGCAAGGTTTGAGAAGACCTTGCCTCCAAAACTTGCTCAATTGAAAGAGAAG TCGGTATCACTGCCAGGGTCAGTACCAGTTTTGCCAGTGGTCTCCGCCTCTGGTGAGTCA GCAGAGCAGTCTGGTGATAGCAAAACCGACTCTCAAGCCGTGAGCAAAATGAAACTTGTT AATATTGAGAAAAGACCTACTAGGACTCCTCGTCCACCGCCTAAACGATCAGGAGGTGGT CCAGCTCCAGCTGGTAATAATGTTATAGGTGGAGCACCTGGAGGTCCACCCCCACCACCT CCTCCGCCTGGTGCTCCACCACCGCCACCTCCACCTGGCGGAGGACCGCCTAGACCACCA CCTCCTCCTGGATCTTTAATGAAAGGAGGAGCTGGAGGTGACAAGGTCCATCGTGCTCCT GAATTAGTTGAATTCTACCAAACTTTGATGAAACGCGAGTCAAAGAAGGACACATCATCA GCTTTGATAACCGCTACTTCAAACACATCAGATGCAAGAAGCAACATGATCGGGGAGATA GAGAACAGATCCACATTCCTCTTAGCTGTGAAAGCTGATGTGGAAAGTCAAGGAGAATTT GTCGAGTCATTGGCAACTGAAGTTCGTGCTGCTTCTTTTACCAATATTGAGGATCTAGTG GCATTTGTGAACTGGCTAGATGAAGAACTCTCCTTTTTGGTTGACGAACGAGCTGTCCTC AAGCACTTTGACTGGCCTGAGGGAAAAGCGGATGCGTTGAGAGAGGCTGCTTTCGAATAT CAAGATCTAATGAAACTAGAAAAGCAAGTAACCACCTTTGTGGATGACCCAAATCTTCAA TGTGATGCGGCTTTGAGAAAGATGTACAGGTTGCTTGAAAAGGTTGAACAGAGTGTTTAT GCACTACTGCGTACTCGCGATATGGCTGCATCACGATACAGAGAATTTGGTATTCCTACT GATTGGTTGCAAGATTCAGGTGTTGTTGGCAAGATAAAGCTTTCATCAGTACAATTGGCG AGGAAGTACATGAAACGTGTAGCATCAGAGCTTGATGCCATGGATGGACCCGAGAAGGAA CCAAACAGAGAATTTTTGATTCTACAAGGAGTTCGTTTTGCCTTCAGAGTTCATCAGTTT GCTGGAGGATTTGATGCTGAAAGCATGAAGGCGTTTGAAGAACTAAGGAGTCGCGTTCAG TCACAAACAGGAGGAGAGAATACACAAGAACCATGA

Peptide Sequence

PEP ID	Solyc05g009930.3.1
PEP Infomation	Hydroxyproline-rich glycoprotein family protein (AHRD V3.3 *** AT3G25690.6)
Sequence	MIVRVGFLVAASIAAYAVKQINVKPSKPSLENGEPLLEQRGDEGDEKEQLLYSTDGLKEV VDEEEEKEEVKLINGIINPAQGNQIDLDDDLFPEFEDLLSGEIEFPLPSDKYDTGREERE RVYQTEMAYNANELERLRNLVKELEEREVKLEGELLEYYGLKEQESDVLELQKQLKIKAV EIDMLNITINTLQAEKQKLQEEVFHGTTARKDLEAARSKIKELQRQMQLEANQTKAQLLL LKQHVTELQEKEEEAFKRDSEVDKKLKLVKELEVEVMELKRKNKELQHEKRELVIKLDAA ESKIAKLSNMTENEMVAQVREEVTNLKHTNDDLLKQVEGLQMNRFSEVEELVYLRWVNAC LRFELRNYQTPQGKVSARDLSKSLSPKSQHKAKQLMLEYAGSERGQGDTDLESNFSQPSS PGSEDFDNASIDSSTSRFSTFSKKPNLIQKLKKWGSRGGKDDSSIMSSPARSLGGASPGR MSMSVRPRGPLESLMLRNAGDGVAITSFGTAEEYDSPETPKLPPIRTQESSAETLNSVAS SFTLMSKSVEGVLDEKYPAFKDRHKLAVEREKTIKAKAEQARAARFEKTLPPKLAQLKEK SVSLPGSVPVLPVVSASGESAEQSGDSKTDSQAVSKMKLVNIEKRPTRTPRPPPKRSGGG PAPAGNNVIGGAPGGPPPPPPPPGAPPPPPPPGGGPPRPPPPPGSLMKGGAGGDKVHRAP ELVEFYQTLMKRESKKDTSSALITATSNTSDARSNMIGEIENRSTFLLAVKADVESQGEF VESLATEVRAASFTNIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY QDLMKLEKQVTTFVDDPNLQCDAALRKMYRLLEKVEQSVYALLRTRDMAASRYREFGIPT DWLQDSGVVGKIKLSSVQLARKYMKRVASELDAMDGPEKEPNREFLILQGVRFAFRVHQF AGGFDAESMKAFEELRSRVQSQTGGENTQEP*

Transcript Sequence

Transcript ID	Solyc05g009930.3.1
Transcript Infomation	Hydroxyproline-rich glycoprotein family protein (AHRD V3.3 *** AT3G25690.6)
Sequence	TATTTGATCTAAACCTCTAACAAAAACGTGTTCATATCCATATTCAAATTCGAGACTCGA TAATAATGAGTCCTTACATTCGTCTATACTTAAATACCAAATTAATTTGAAACATCACGG ATCATTTAGTTTTTATTAATATTCGTGATGGTAAAAATATTTTCTAACAAATACTTTTCA TGTTTAGGTTCTGATTGATAATTTTATATTTAGATTCAAATCTAAGATATTTATGTAAGA ATAAACTCTCTAACAAACACAACTCTATTTTTATATTTTTATCTGTAATAAAAACGAAAT TTGAGATTTCTAATTAAAGATAAAACAAATTATTTAACCACTTAGAGTGAGAATGCAGAA ATCTAGGGTGTCACCTGTTCCAAAGTTCATATTTTTACTGTATTCAAGTCCCTTTCTTCT TAAATTTTCCTCTACATTCAACAAGTTTTTGACCCTATATCCAAAAAAATGTCAATCTTC TTTGGCCAAACATTGGCCACTCAAGAAATTGGTGGTTCCCTGTAGCTTTATGTGTTTTGT TTTTGACAGTTGTGCATTAAAAAACCAATCTTTTTTCTTTCTTGATAAGATTATAACACT TCCCCTTCAAGAACTGCACCATTACACTAATTATCAATTGTGGGGTTCTCATTTTTTCCT CATTTTTGATGAGGCTATGGATTGATTCTTGAGCTATGGGGTTTCATAAAAAATGGGTGG GGGTTATTTTTTATTGTTAAATGAGTTGAAGCTTCAATTTTTTCCATTGAAAATACTTAC ATGATAGTTAGGGTAGGTTTCTTGGTTGCTGCTTCTATAGCTGCTTATGCAGTTAAGCAG ATAAATGTAAAACCTTCAAAGCCATCATTAGAAAATGGTGAACCATTGCTTGAACAACGA GGGGACGAAGGGGATGAAAAGGAGCAGCTTTTGTATTCGACGGATGGCCTCAAAGAAGTG GTTGATGAGGAAGAAGAGAAAGAAGAAGTTAAATTAATCAATGGAATTATAAATCCAGCA CAGGGTAACCAGATTGATCTTGATGATGATCTTTTCCCTGAATTTGAAGATCTTTTATCC GGGGAGATTGAATTTCCGTTACCAAGTGACAAGTATGATACAGGAAGAGAAGAGAGAGAG AGGGTTTACCAAACTGAGATGGCCTACAACGCGAATGAACTTGAAAGATTGCGAAACCTT GTTAAGGAACTTGAGGAAAGGGAGGTGAAGCTTGAAGGGGAGTTGCTTGAGTATTATGGT TTGAAGGAACAAGAGTCGGATGTCCTCGAATTACAAAAGCAGCTCAAGATTAAGGCTGTT GAGATTGACATGCTCAACATCACGATAAATACGTTACAGGCTGAGAAACAAAAGCTTCAA GAGGAGGTTTTTCATGGAACTACTGCTAGGAAAGATCTAGAAGCTGCTAGAAGCAAGATT AAGGAGCTGCAAAGGCAGATGCAACTCGAAGCTAACCAAACGAAAGCTCAGTTGTTGTTG CTAAAACAACATGTCACTGAACTTCAAGAAAAGGAAGAGGAAGCTTTCAAGAGAGATTCC GAGGTTGACAAGAAGCTTAAACTTGTGAAGGAGTTGGAAGTGGAGGTCATGGAACTTAAG AGGAAGAACAAAGAACTTCAGCACGAAAAGAGAGAGTTGGTTATTAAATTGGATGCTGCT GAATCTAAAATAGCGAAGTTGTCTAATATGACGGAGAATGAAATGGTTGCTCAGGTGAGG GAAGAAGTAACTAATTTGAAGCATACAAATGATGATCTTCTAAAACAAGTAGAAGGACTT CAAATGAACAGATTCAGTGAAGTTGAAGAGCTAGTGTATCTTCGTTGGGTCAACGCATGC TTAAGATTTGAACTTCGGAACTACCAAACACCTCAAGGAAAAGTATCCGCTCGTGATCTC AGCAAAAGCCTGAGCCCAAAATCTCAGCACAAGGCCAAACAGTTGATGTTAGAATATGCA GGTTCTGAACGAGGCCAAGGAGATACAGATCTCGAAAGCAATTTTTCTCAGCCATCTTCT CCCGGTAGTGAAGACTTTGATAATGCTTCTATAGACAGTTCCACTAGCAGATTTAGTACT TTCAGTAAAAAGCCCAACTTAATCCAGAAGCTGAAGAAATGGGGCAGCAGAGGTGGTAAA GACGATTCTAGTATTATGTCTTCACCAGCAAGATCTCTTGGAGGAGCATCTCCTGGTAGG ATGAGTATGAGTGTAAGACCAAGGGGTCCTCTGGAATCTCTAATGCTTAGGAACGCGGGT GACGGTGTAGCCATCACTAGTTTTGGAACAGCTGAGGAATACGATTCCCCAGAAACACCA AAGCTTCCACCGATTAGGACTCAAGAATCTTCTGCTGAGACACTGAATTCAGTTGCATCA TCGTTTACTCTAATGTCAAAATCGGTGGAAGGAGTTCTAGATGAGAAGTATCCGGCATTC AAAGATAGGCATAAGCTGGCAGTAGAACGAGAGAAGACAATTAAGGCTAAAGCTGAGCAG GCAAGAGCAGCAAGGTTTGAGAAGACCTTGCCTCCAAAACTTGCTCAATTGAAAGAGAAG TCGGTATCACTGCCAGGGTCAGTACCAGTTTTGCCAGTGGTCTCCGCCTCTGGTGAGTCA GCAGAGCAGTCTGGTGATAGCAAAACCGACTCTCAAGCCGTGAGCAAAATGAAACTTGTT AATATTGAGAAAAGACCTACTAGGACTCCTCGTCCACCGCCTAAACGATCAGGAGGTGGT CCAGCTCCAGCTGGTAATAATGTTATAGGTGGAGCACCTGGAGGTCCACCCCCACCACCT CCTCCGCCTGGTGCTCCACCACCGCCACCTCCACCTGGCGGAGGACCGCCTAGACCACCA CCTCCTCCTGGATCTTTAATGAAAGGAGGAGCTGGAGGTGACAAGGTCCATCGTGCTCCT GAATTAGTTGAATTCTACCAAACTTTGATGAAACGCGAGTCAAAGAAGGACACATCATCA GCTTTGATAACCGCTACTTCAAACACATCAGATGCAAGAAGCAACATGATCGGGGAGATA GAGAACAGATCCACATTCCTCTTAGCTGTGAAAGCTGATGTGGAAAGTCAAGGAGAATTT GTCGAGTCATTGGCAACTGAAGTTCGTGCTGCTTCTTTTACCAATATTGAGGATCTAGTG GCATTTGTGAACTGGCTAGATGAAGAACTCTCCTTTTTGGTTGACGAACGAGCTGTCCTC AAGCACTTTGACTGGCCTGAGGGAAAAGCGGATGCGTTGAGAGAGGCTGCTTTCGAATAT CAAGATCTAATGAAACTAGAAAAGCAAGTAACCACCTTTGTGGATGACCCAAATCTTCAA TGTGATGCGGCTTTGAGAAAGATGTACAGGTTGCTTGAAAAGGTTGAACAGAGTGTTTAT GCACTACTGCGTACTCGCGATATGGCTGCATCACGATACAGAGAATTTGGTATTCCTACT GATTGGTTGCAAGATTCAGGTGTTGTTGGCAAGATAAAGCTTTCATCAGTACAATTGGCG AGGAAGTACATGAAACGTGTAGCATCAGAGCTTGATGCCATGGATGGACCCGAGAAGGAA CCAAACAGAGAATTTTTGATTCTACAAGGAGTTCGTTTTGCCTTCAGAGTTCATCAGTTT GCTGGAGGATTTGATGCTGAAAGCATGAAGGCGTTTGAAGAACTAAGGAGTCGCGTTCAG TCACAAACAGGAGGAGAGAATACACAAGAACCATGAGAATATTTGTATTTTGGTTTTGGT CACTGTATATTTCATCATTTTCTCCAAGTATAGCAAAACATATTCTATCTTGGACATTTG TACAATTCGAAAGGTTAAACTCAAGGAGAATGTCAGATAACACAGATTAGTTAAAAAGAA GTTGCAGGGATAAACAGTGTAGGGTTAAACACTTTAAAAACTTCACTGAACAGTGAGTGA AATTTGGACCTGCATATTCATGAGAAAGAAATAACTATTAAAGCAATTCGAGAATTATTC GAAATTAACTTCAAATTTGAAGAATGTGTCTACAAGAAACTTGAGAATATATTCTGTGGG GACTCAATCATCAGTACCCTTTTCTCCATTTAACATGGACAACCTCCATTGTGTATAAAT AGGAGAATGATTTATTTACTGCTTGGCCATGAAAGAACTCATAAAATCAATGGTGTTTAC AACATTTGATGTGAAGTGACTCTAGCTGCATGCTTGTGGCTAAATATGTAGGTGAGGTTT CTTGATTTCATCTGCTATCTCATTGTGATGACAAGACTTCTATCTGCAAATTTAGCACCT CCAACCTTCCCTTGAAGTTGAGATGGTAGACGAATCACACGTCTCTGATCACCGGCCTCC ACCAACAACTCAGACCCTCCTCTAAACTGCAAATAGCCAGAAATTCTAATTAATATCCCC ATATAATTTGGTTTTCAGTAGCATGAATTGTAAGAACATGGTGAGAAAAATAACAAAACG AGCCTTTGGTCATCGTTAGAGGTCAAAACGCCCTCAACTTGGATAACCAAAGAAAGTTAG ATGTCAGTAGAACTTTTCATGTGCTACATTAACAGCAAAAATCTTGGGACAACCTAGAAC AGCAAGCTAAGAATGTTCTTAATCACTCAACTACATATTATAGTGCTTCATGTAAATCTA AGCATCTGTTTAATGTTTTATAGTTAGTGTTCGTTGCAGTTAAGAGAGCCTTACACCCTG AAGAAGCCAACCACTTTTTGATAATTTCTATGGCAAATGCTTACAGAAATTATCGATTAG TAAATGCTTATTCAGTCTATTACCAAAATAATATCTGTTATCTAGTGAAGAATTTTGTTG CATTGAAGTTCACAAAAGGATCGATTTTTTGGAATCATAGCATACACATAATGTAGAAAG GTGAAACAAACCATACTACTTACTTGATATAGCTTGATTTCTGATTTGTCAAAACCAGGC ATGAGAAGAGTGACGATTTTGTTGGTTGGATCAAAGATAACCGCAGGAATTCTGGCCTCA TGAGCTGTTACAGTCAGAAGATTCCGTGCACTCTCACTATGACTATCCTGCATAATTTTG TCCCAATCTAAATGGGCTCCGTCTGAGATATGTGGAACAAAAGCAGAAGGCAAAGGTGAA AAGTCCTCAATCGTTGCCCCTACTTCTCCACTCGAATTTGGTCTTGCAAGAGCAAATGCA CCAGAAACCTGTGCACCAGCCTGGATTATGCAACCCCAGTAACGTAAAGAAGAAGCCATA GACACAGGGCTGTTTCTATCCACCACAATATAGCAACCAAACCTTTTTGGTTCTGCAAAT ATTGAAGACCCTCTCTGCAGCATGCAAAATCATTAGAACCTTTAGTTCAAATAGAATGGC ATCTTGAAAACAGATTAGTAGCTGGCATACCTCCAATACTTGTTCTAGAAGGTCCCAGAT TTCTGAACTCATTTTCCCATTCAGATTAGGATTTCTACCGCTTAGAGTCATGGCTTCTTC GGCAAGTCTCAAAAGTGAGGGACTTGCCAGCCTACCTAAATCAGTTTTTTCAGCAAAATT GCGGAGATATTTTAAGTATAATCTGCACGTGGAAATAATGATATGAATCTCCACATCAGT TTTGGCATAGAGACATAAGACATTTGACAAGTCTTGGAGAAGATCTAACCTTGCTTTGCT GGTTGCACCAATCATTCTGATTGTTTCTTCAGTACTCATGCCATCATATATAATAATATC AAATTTCTCTTTTTTGCTGTTCTGTTGAACCACATTTTCAAAATATCCTACAAGCCGCTC GAGTGCTAGGGATGAAAATATGGAGTCCATTCCAGGAAGTACTCCAAGCTCTTCTCCGAC CACCTACTACATTTCGAAAAAAAGTTACTCAAAGAGCGACTCATCCATTTCCTGGCAAAA GAATGCCAGATAACGCACCACTAAGTTACATACCCACCCCTTCAAGAACTCCTTGAGTCA TATTAAGGCGAGCATCTGCTTGCTTCAGTTTATTGAGAGAATCAAGGAGCATCTGCAATT ACTTATGATTGTTCAGCCCAAATGATTCGCAACCAAATGTATAATCTCAATTTGCAGGTA GACAGATGAAGTAATTAAACAAAAACAGACTTTTGTAGTTTCCAATCTGACAGCTGAGAG GTTGTCGTTGCATGTTATTGGCGACGTCCCAATCTTACAATTCAGAAGATATTCAGCTGT GGGGTCTTGAGAATGTATCACCAAACAGGTTTTGAGCCCTGCCATTGCATAATGCTGGTA AGAAAAGAAATTTGCTGGTTAGTCTACCTAACATTATCATATGCAGGAGGGACTCACAAT TCCTGATATGATACAGCATTAGTTAAGGTTTAAAGGGGAAAAGACAAGCAGATTCAGGTC AATGTGGAATGTCTTTTTATTCTTATGTGCAAGTACTAGATAATATCTGAGAGTTGCACT GAAAAATGGAAGGGAAAAAACAACAGAAATGCAGTGGCAGTGCCCAGATAATAAGCCATA AAATAGAAGAACATGCTGTTAAAATTTATAGGGGAAAGCCAAAGATGCAGTGATCAATGA ATAGTGCTAATATTTTGCGTGAGCACTAAATTTATGTCTCATCATCACATACAAACACAG TTTTTGTCAAGATATTTTATAGAAATAAGGTCACCTAAGACAACAACCTTATGGTAATCC CTCGGAAACAAACTTCTAAACAATTCATGAGGTTTGTTCATTTCCTACCCCCTCCCTTGC ACTCCCGGATGTTTTTCCAATTCTTTATTCCACTACCCACAGTGTTGAAGGAAAAGAAAA GGGAAGATATAGTGTAACGAGTTTTCCTTCTGACAAACAAAAGAATGAGCTCGTGACAAG AGAAAACGTGGTTAAGATTATAGTTGGAAACTGTGCTCTTTTGATTTTGAATATGTAACT AAAAACTAATATACCTCTTTAAAGTCAGCAGCTTCTAAAGAAAAAACAGTTGAAGACAAA TGAACTAAATCATGATTCATGAAAGTAACTGCAATGAAATATCATAACATTCTTTTATTC TGAGCTGGGTTGAAAATAGTTTATCTTGTCATAAACCTCATAAATCATAGCTTGACTCAT TTAAAAGAAATACTCCAGTCAACAGAAACCACAATCTTTACTTTGTTTTGGTTAAAATTC AATTGTCTCGCTATATAAAACAATAAATGGAAGC