Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g008840.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1)
Sequence

ATGTCTATGAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCG
ACACCGGAAGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAA
AATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTT
TGTTGTGCTCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGA
TCAAATAATAGAGAGCACCCTCGTATCGCGAGGAGAGCAACGAATGGCGAAGCAATTTCT
AGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTCTCATCATCGTCCTCATATT
ATGATCCTCAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGA
TCTTGGAGACTAGATGTAGATGATATGTCATATGAGCAATTGGTTGAACTAAGTGATAAG
ATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTT
TAG

Peptide Sequence

PEP ID

Solyc05g008840.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1)
Sequence

MSMSFRGLGCKGKLNSPDASTPEVIRSAAQWESSSKQMRKNRRKKMTTLSTSTRNSTNVV
CCAPPGIGSAYDVAPRPKTRSNNREHPRIARRATNGEAISRSHTSNTRHHCPRSHHRPHI
MILRHNLQYARDVEGDDQYGSWRLDVDDMSYEQLVELSDKIGYVGTGLEEEKIVEYIRKF
*

Transcript Sequence

Transcript ID

Solyc05g008840.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1)
Sequence

TGAATGTCTTCACATTAATCGGACGATTCATCAATGTCGGTATCTCAGTCACAGATTGAT
GTTGTCCTCAAAATACCCCTTAGTTTTTACTCAACTATATCCGTAGTATCAGGATTTCGA
CCACCCGGATCATTTATGCAAATGATATTTAGGTTACGATTTAGATTTTATCCATATTTT
TAAATTTTAATGAACAGAATATTAAACTGTCATCTAACGTGTAATAAAACTGCGATCTAA
TATAGACCATCATAACTTACAAAAAAAAATAAAAAATAAAACGACGATCATTTACTAAAC
AGCTGACCAACCAAAAATTTCCTAATAGGACAAAGGGAGGGACCAAATTTCAAATATTTC
AAAACCATATACAAATGAACAAAAAATCCTTTGATACAATAATTCATTTGTTCTCTTCTT
CTTCTACTACTACTTTGTGATCTCTCTAAATTTCATTATTTCTTTTAACACAATGCCAAT
ATCAACAATTGAACATCAATATTCAAGATTCAAAAATCCAAAAAACAACACTCATTCTAC
CCCTAATCATCAATTTTCCAACACAAATGTATCAAAAAACAAGAAAAAATTTATGTCTAT
GAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCGACACCGGA
AGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAAAATAGAAG
AAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGC
TCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAA
TAGAGAGCACCCTCGTATCGCGAGGAGAGCAACGAATGGCGAAGCAATTTCTAGGTCTCA
TACGTCTAATACAAGACATCATTGCCCTCGTTCTCATCATCGTCCTCATATTATGATCCT
CAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGATCTTGGAG
ACTAGATGTAGATGATATGTCATATGAGCAATTGGTTGAACTAAGTGATAAGATTGGGTA
TGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTTTAGCTCTC
AACAATTGACTCATATTCAATGCTAATATCTACTGAAAAAAGTTGGAAATGTACCATTTG
CCAAGAAGGATACAAAGTTGATGATGAAATTGGAAAACTAGAATGTGGACACTACCATCA
CATTGAGTGCATAAAGAAATGGCTTATGCATAAAAATTCATGTCCTATTTGCAAAATTGC
AGCAATCCATGAAAATTAATTATTGACAAAAATTTCTTTCACTTTTCTCTATATTTTTAT
ATTATATAGTCAAGAATATTTAATTTCAGAGGCAGAAATTAAATTTTGGTTTTAATTTTT
CCTATTTTTGGTTTTCTACTTCAATTATATATGTTGGTTTTGGAAATTTTTATATTGATT
AGTTTGTTATCGAAATTCCCCTTGGGATAGTATTTCAAAATATTTCAAATTAGGGATAAA
ATAGTAAATTCTATTTATTATTTATCAAACGCGTAGATAAGCTAAAAAAAATTCTTAGCC
AAACACCTACCTTATATATATATATATATATGTTATAAGCGCTACTTCATAATCTCGTCA
CTCAACGTAACATTTGTTTTCACCTGGTGTACGATACTCATTTATTAGTCCTGATTAATT
TATATTCGCACCACATAATACCGTTATAGAGGGCGTTTTTTTTTCAAGAATTGGTTAATA
TTCTAAATAGTAGTCCTAAAAGTGGTTATATATGTAAATCATCCAATCAAAAGCTAATGG
TCCACTAAACAATTGGGCTTACTTACACCTTTCAGTTTTGGGCCTATTTGGGCTTTTAAA
AATAAGAATGGTAATTTCTACTGAATGTAAAGAGTAACGGCCCATCAACAACATACCCGT
TATAATCCCACAAGTGAGGCGAGTAATGCTCCATTTCGGAAAAACAAAAACGTATTAAAA
TTTCTAAATTGTTGTATCGTCTAGGGGTAGTAATTCTTTTTTGATAAGTGGTCAAATGTT
GTAACGTTCTCTAAAAATTTAGCCTCGTGAATAACAAACTCGCCCTTTATATATCCGTCT
CTGCTTAAATATAAGTCTAATTCATACATTACGTGCGATAAGTTTTTTTCCCGAACCAAA
TTCTAAGGTAAATTATTTTTTACATGCACCATCAAATTATTCTAAGATATTTCTAAGTAA
GTCTTTTTAAAATATAAATTTTATAATTTTTGAAAGTAACATACTTATTCGATATATATA
ACACGATTTTTTTAAAGTTAAATAAAATAGAGTAGGAAAAGGAGAAATTGAGAAGGAAAA
TTATAAGATAAAAAATAGAACCATTACGAATAAAATAAAAATTTAATAATCAAATAACTA
AATTATCGAAATAACAAATAAAAATAATATAATAATATAAATATTTTTTTATGGTGGGGT
CAGGGAGGGTGTAGGTTGGAAGTCCAAATCACATGGTTGTACAATACCTTTTTTTTTTGG
TTTTTTATTTGATATTTGATATCTATAAAATATTGGATTAAGATTCGAGTCGAGAAAGTT
TTAAGTTACTAAAGATAATTATGTTTAGAATCTGAACTCATTTTCAAGTTAAGAATGAAT
ATATATTATCATATAATTACGATATTTCTAAATACATATACAAAAATTATCAAAGATCTT
AATAAAGTGATTATAAGTATTTTTTTCCAGTTTCTGATTCCAGAATGTCTGCATCTATTG
TTCTTGTTATAGATGAATGTTTAGATGAACTATACCTAAAGTGATTATAAGTATGTATCA
ATTCTTTAATAAAGA