Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g008330.2.1
CDS Infomation

Pentatricopeptide repeat protein (AHRD V3.3 *** D2STE8_GOSHI)
Sequence

ATGTCTGCTGGTAATACCAGTACTACTACTTCTTTACTCTTAAACAGATCAATTCATCAC
GATTCAGTGAAGAATACCCATCTCAATTCCAATCCCCAGAACCCAGAAATTATCCAGGAA
GCTGAAAGAATCTGCAAAATCTTACTGAAAAACACCAATGTTGCTGATGCTTTGAGTTCT
ACTTCAGTCAATGTGAGTCCTTTATTAGTTAACGAAGTTATAAAGAAGCTCAGCAATTCT
GGGATTTTAGCTCTATCTTTCTTCCGTTGGGCTGAGAAGCAGAACGGGTTTGTTCATACT
GCAGAGAGTTATCATGGTTTGATTGAAGCTTTAGGAAAGATTAAGCAATTTAAGATGGTT
TGGATTTTGGTTAATGAATTGAAAACCAAAGGGTTATTGTGTAGAGAAGCGTTTGCACTC
GTTTCGCGGAGATTTGCTCGTGCTAGGAAGGTTAAAGAAGCTATCGAGGCGTTTGAGAGG
ATGGAGAAGTATGGATTGATACATGAATTGCAAGATTTCAATAGATTGCTGGATACATTG
AGCAAGTCTAGGCATGTTGGGAATGCACAAGAGGTGTTTGATAAATGGAAGAATAGGAAA
TTTAAGCCTAATATTAAGTCGTATACGATACTGTTAGAAGGATGGGGTCAAGAAAAGAAC
TTGTTGAGGTTGAATGAAGTTTATCGCGAGATGATGGCTGATGGTATTGAGCCTGATGTT
GTTAGCTACGGGATCATGATTCATGCTCATTGCAAGGTTAAGAAGTATGATGAGGCGATT
GAGTTGTTACACGAAATGGAAAGGAAGAAGATTAAGGTGACGCCTCATGTTTATTGCACG
TTGATAAATGGTTTGGGGTCGGAGAAAAGGTTGGTTCTAGCTCTTAAGTATTTCAAGTTG
TATAAGGGTAGTGGCTTTGATCTTGAGGTGTTCACTTATAACGCGATGGTGGGAGCTTAT
TGCTGGTCTTTGTGTATGGACGATGCGTATAGGCTAGTTGATGAGATGAGGAGATGTAAG
ATTGGTCCAAATACACGAACTTATGATATCATTCTTCACCATCTTATAAAAGCCAGAAGA
ATGAGTGAAGCTTATACGGTTTTTCAGAAAATGAGCAATGATCCTGGCTGTGAACCGACT
GTGAGCACATACGAGATAATGGTAAGGATGTTCTGCAACGAGGAACGGACAGATATGGCT
CTAAAGGTCTGGGATAAGATGAAAGCTAACGGTGTTCTTCCTGGAATGCATTCGTTCTCC
ACGTTGATTAACAGCTTTTGTCGTGAAAGTAAACTAGATGATGCCTGTAGATACTTTCAA
GAAATGCTTGATATGGGCATGAGACCTCCAATTCCATTGTTCGATAACCTAAAACGTGCA
CTTCTTGACGAGGGTAAAGAGGATATTGTTAAAGCTTTATGGCGAAAACTTGAGAAACTA
AGGAAAAGTCCTTTAGTTGGATGA

Peptide Sequence

PEP ID

Solyc05g008330.2.1
PEP Infomation

Pentatricopeptide repeat protein (AHRD V3.3 *** D2STE8_GOSHI)
Sequence

MSAGNTSTTTSLLLNRSIHHDSVKNTHLNSNPQNPEIIQEAERICKILLKNTNVADALSS
TSVNVSPLLVNEVIKKLSNSGILALSFFRWAEKQNGFVHTAESYHGLIEALGKIKQFKMV
WILVNELKTKGLLCREAFALVSRRFARARKVKEAIEAFERMEKYGLIHELQDFNRLLDTL
SKSRHVGNAQEVFDKWKNRKFKPNIKSYTILLEGWGQEKNLLRLNEVYREMMADGIEPDV
VSYGIMIHAHCKVKKYDEAIELLHEMERKKIKVTPHVYCTLINGLGSEKRLVLALKYFKL
YKGSGFDLEVFTYNAMVGAYCWSLCMDDAYRLVDEMRRCKIGPNTRTYDIILHHLIKARR
MSEAYTVFQKMSNDPGCEPTVSTYEIMVRMFCNEERTDMALKVWDKMKANGVLPGMHSFS
TLINSFCRESKLDDACRYFQEMLDMGMRPPIPLFDNLKRALLDEGKEDIVKALWRKLEKL
RKSPLVG*

Transcript Sequence

Transcript ID

Solyc05g008330.2.1
Transcript Infomation

Pentatricopeptide repeat protein (AHRD V3.3 *** D2STE8_GOSHI)
Sequence

ATGTCTGCTGGTAATACCAGTACTACTACTTCTTTACTCTTAAACAGATCAATTCATCAC
GATTCAGTGAAGAATACCCATCTCAATTCCAATCCCCAGAACCCAGAAATTATCCAGGAA
GCTGAAAGAATCTGCAAAATCTTACTGAAAAACACCAATGTTGCTGATGCTTTGAGTTCT
ACTTCAGTCAATGTGAGTCCTTTATTAGTTAACGAAGTTATAAAGAAGCTCAGCAATTCT
GGGATTTTAGCTCTATCTTTCTTCCGTTGGGCTGAGAAGCAGAACGGGTTTGTTCATACT
GCAGAGAGTTATCATGGTTTGATTGAAGCTTTAGGAAAGATTAAGCAATTTAAGATGGTT
TGGATTTTGGTTAATGAATTGAAAACCAAAGGGTTATTGTGTAGAGAAGCGTTTGCACTC
GTTTCGCGGAGATTTGCTCGTGCTAGGAAGGTTAAAGAAGCTATCGAGGCGTTTGAGAGG
ATGGAGAAGTATGGATTGATACATGAATTGCAAGATTTCAATAGATTGCTGGATACATTG
AGCAAGTCTAGGCATGTTGGGAATGCACAAGAGGTGTTTGATAAATGGAAGAATAGGAAA
TTTAAGCCTAATATTAAGTCGTATACGATACTGTTAGAAGGATGGGGTCAAGAAAAGAAC
TTGTTGAGGTTGAATGAAGTTTATCGCGAGATGATGGCTGATGGTATTGAGCCTGATGTT
GTTAGCTACGGGATCATGATTCATGCTCATTGCAAGGTTAAGAAGTATGATGAGGCGATT
GAGTTGTTACACGAAATGGAAAGGAAGAAGATTAAGGTGACGCCTCATGTTTATTGCACG
TTGATAAATGGTTTGGGGTCGGAGAAAAGGTTGGTTCTAGCTCTTAAGTATTTCAAGTTG
TATAAGGGTAGTGGCTTTGATCTTGAGGTGTTCACTTATAACGCGATGGTGGGAGCTTAT
TGCTGGTCTTTGTGTATGGACGATGCGTATAGGCTAGTTGATGAGATGAGGAGATGTAAG
ATTGGTCCAAATACACGAACTTATGATATCATTCTTCACCATCTTATAAAAGCCAGAAGA
ATGAGTGAAGCTTATACGGTTTTTCAGAAAATGAGCAATGATCCTGGCTGTGAACCGACT
GTGAGCACATACGAGATAATGGTAAGGATGTTCTGCAACGAGGAACGGACAGATATGGCT
CTAAAGGTCTGGGATAAGATGAAAGCTAACGGTGTTCTTCCTGGAATGCATTCGTTCTCC
ACGTTGATTAACAGCTTTTGTCGTGAAAGTAAACTAGATGATGCCTGTAGATACTTTCAA
GAAATGCTTGATATGGGCATGAGACCTCCAATTCCATTGTTCGATAACCTAAAACGTGCA
CTTCTTGACGAGGGTAAAGAGGATATTGTTAAAGCTTTATGGCGAAAACTTGAGAAACTA
AGGAAAAGTCCTTTAGTTGGATGA