Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g008230.3.1
CDS Infomation

U-box domain-containing protein 11 (AHRD V3.3 *** W9RS70_9ROSA)
Sequence

ATGGCCGGCGGAGAAGCCACCGCCGTTGCCGGAGACCACCCTATTGCCACCCTACTACGG
CTACTCCATGAGGTGTCACAGATCTCAATTGCTGGATTTTATGGTAAATTCAAGAAAGAT
TGTACAGATTTAGCAAGAAGAGTTACACTTTTGGCTCATTTGTTTGATGAGTTAAAAGAC
ACAAATACCCTTTTGGGTTCTTCATCTTCTTCATTCAATTCTTGTTTTTCTGATCTCTCT
GTTGCTCTTCAAGCTGCAAAACAACTACTTTTAGCAGCTAATGAACTTGATCCCAAGATC
CACTCTGATGTCGCAGTGAAGAAAATAAACTTCCGGTTTCAATGTGTTACATGGAAATTG
GAGAAAGCCCTTGGTAACTTCCCATATGATCATTTTGACATATCAGAAGAAGTACAAGAG
CAGGTTGAATTGGTCAGAGCACAGTTGAGACGAGCCACAGAAAAGTATGGTGGCCCTGTG
AAGTCAAACTTATTATCTCGAGCATCGTCACAACCACTGGATAAAGAGATTGATCTACTC
CATTCAGGAAATAGTGGAATTGGAACTTTACATATAGAAAATATTGGCAATATTGATCAT
GAAGTTAGGCCAAAAGTTGGACGTGTTCCTCGAGGTAGTGTTCGAAACCAAAGTTATTGC
AGTCGGATTTTTCAGGAGTCGGAAAGAATAGGAAATTCATCCAAATTGTCTGGTATTGGT
GATCCGGAGATTTTCGGGGAAGATGACTCTCCGCTTAAGAGTCACGAGGAGAGTAAAAAG
TCCAACTGTCCTGTAACTCCTACAGAGTTTATTTGCCCTATATCCCTTGAGCTCATGAGG
GATCCTGTTATTGTGGCTGCCACAGGGCAGACTTATGAGAGATCGTACATACAACAATGG
ATAGATGGCGGCCACACAACATGCCCAAAAACTCAGCAACAGCTCCACAATCTCACGCTT
ACCCCAAACTATGCTCTGCGAAATCTAATTATCGATTGGTGTGCAAAGAACAATATACAA
CAGCCAACCGTATTTGCAAATGGGAAAATAAAGAGAAGTGATGGATCATTTCGCTATGTT
ATTGGGGAAATAGGAGCTATGGAGGTACTTGTCCGAAAGCTTTCAAGCAGGTCCGTGGAG
GATTGCAGGGCTGCAGTAGCCGAGATCCGTTCACTTTCCAAAAGAAGCACAGACAACAGA
ATTTTGATTGCTGAAGCGGGAGCAATTCCAGTCCTAGTTAAGTTGTTGACATCTGAAGAC
ACGCAAATCCAAGAGAATGCAGTCACTGCCGTTCTTAACCTTTCTATATTCGATGACAAC
AAAAGGATTATAATGCTATCTGATGCCATTCCTTCTATCGTTCAAGTTCTCAGAGCGGGG
AGCACGGAGGCAAAAGAGAATGCAGCCGCAACCATTTTTAGTTTGTCGCTTGGAAACGAG
AATAAAATACTAATAGGCGCGTCAGGAGCCATACCAGCTCTCATAGATTTGCTTCTGACA
GGAAATACCAGAGGAAAAAAAGACGCTGCATCAGCATTGTTTAATTTGTGCATATATCAA
GGAAACAAGGGTCGAGCTGTTCGTGCAGGGATTATACCAGCGCTGCTGGAAATGCTAACG
GATTCAAGCAGCTGCATGGTCGATGAACCTTTGACCATTCTTTCTGTCCTAGCTAACAAC
CAAGAGGCTAAGGAGGCCATAGCAAAAACTAGCACAATCCCAGTATTGATAGATCTTCTT
AGGACAGGTCTATCTCGTAGTAAAGAGAATGCAGCTGCCATCTTACTCTCGTTGTGCAAG
AGAGATTCCGAGAACCTTTCTTGCCTTTGTAGGCTCGGTGCTGTTATACCTCTTACACAG
CTCACAATGAGTGGCACGGAGAGGGCCAAGAGGAAGGCGACTTCACTGTTGGAGCATATT
AGAAAGTCTCAGCAACATAGCACGCGCATTTAG

Peptide Sequence

PEP ID

Solyc05g008230.3.1
PEP Infomation

U-box domain-containing protein 11 (AHRD V3.3 *** W9RS70_9ROSA)
Sequence

MAGGEATAVAGDHPIATLLRLLHEVSQISIAGFYGKFKKDCTDLARRVTLLAHLFDELKD
TNTLLGSSSSSFNSCFSDLSVALQAAKQLLLAANELDPKIHSDVAVKKINFRFQCVTWKL
EKALGNFPYDHFDISEEVQEQVELVRAQLRRATEKYGGPVKSNLLSRASSQPLDKEIDLL
HSGNSGIGTLHIENIGNIDHEVRPKVGRVPRGSVRNQSYCSRIFQESERIGNSSKLSGIG
DPEIFGEDDSPLKSHEESKKSNCPVTPTEFICPISLELMRDPVIVAATGQTYERSYIQQW
IDGGHTTCPKTQQQLHNLTLTPNYALRNLIIDWCAKNNIQQPTVFANGKIKRSDGSFRYV
IGEIGAMEVLVRKLSSRSVEDCRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSED
TQIQENAVTAVLNLSIFDDNKRIIMLSDAIPSIVQVLRAGSTEAKENAAATIFSLSLGNE
NKILIGASGAIPALIDLLLTGNTRGKKDAASALFNLCIYQGNKGRAVRAGIIPALLEMLT
DSSSCMVDEPLTILSVLANNQEAKEAIAKTSTIPVLIDLLRTGLSRSKENAAAILLSLCK
RDSENLSCLCRLGAVIPLTQLTMSGTERAKRKATSLLEHIRKSQQHSTRI*

Transcript Sequence

Transcript ID

Solyc05g008230.3.1
Transcript Infomation

U-box domain-containing protein 11 (AHRD V3.3 *** W9RS70_9ROSA)
Sequence

AACAATTTAACTCGAGCTTCATTAATACCCATTAGTGTTTGTACTGACACTTATCCACCA
AAAAAAACACAACCACCATGGCCGGCGGAGAAGCCACCGCCGTTGCCGGAGACCACCCTA
TTGCCACCCTACTACGGCTACTCCATGAGGTGTCACAGATCTCAATTGCTGGATTTTATG
GTAAATTCAAGAAAGATTGTACAGATTTAGCAAGAAGAGTTACACTTTTGGCTCATTTGT
TTGATGAGTTAAAAGACACAAATACCCTTTTGGGTTCTTCATCTTCTTCATTCAATTCTT
GTTTTTCTGATCTCTCTGTTGCTCTTCAAGCTGCAAAACAACTACTTTTAGCAGCTAATG
AACTTGATCCCAAGATCCACTCTGATGTCGCAGTGAAGAAAATAAACTTCCGGTTTCAAT
GTGTTACATGGAAATTGGAGAAAGCCCTTGGTAACTTCCCATATGATCATTTTGACATAT
CAGAAGAAGTACAAGAGCAGGTTGAATTGGTCAGAGCACAGTTGAGACGAGCCACAGAAA
AGTATGGTGGCCCTGTGAAGTCAAACTTATTATCTCGAGCATCGTCACAACCACTGGATA
AAGAGATTGATCTACTCCATTCAGGAAATAGTGGAATTGGAACTTTACATATAGAAAATA
TTGGCAATATTGATCATGAAGTTAGGCCAAAAGTTGGACGTGTTCCTCGAGGTAGTGTTC
GAAACCAAAGTTATTGCAGTCGGATTTTTCAGGAGTCGGAAAGAATAGGAAATTCATCCA
AATTGTCTGGTATTGGTGATCCGGAGATTTTCGGGGAAGATGACTCTCCGCTTAAGAGTC
ACGAGGAGAGTAAAAAGTCCAACTGTCCTGTAACTCCTACAGAGTTTATTTGCCCTATAT
CCCTTGAGCTCATGAGGGATCCTGTTATTGTGGCTGCCACAGGGCAGACTTATGAGAGAT
CGTACATACAACAATGGATAGATGGCGGCCACACAACATGCCCAAAAACTCAGCAACAGC
TCCACAATCTCACGCTTACCCCAAACTATGCTCTGCGAAATCTAATTATCGATTGGTGTG
CAAAGAACAATATACAACAGCCAACCGTATTTGCAAATGGGAAAATAAAGAGAAGTGATG
GATCATTTCGCTATGTTATTGGGGAAATAGGAGCTATGGAGGTACTTGTCCGAAAGCTTT
CAAGCAGGTCCGTGGAGGATTGCAGGGCTGCAGTAGCCGAGATCCGTTCACTTTCCAAAA
GAAGCACAGACAACAGAATTTTGATTGCTGAAGCGGGAGCAATTCCAGTCCTAGTTAAGT
TGTTGACATCTGAAGACACGCAAATCCAAGAGAATGCAGTCACTGCCGTTCTTAACCTTT
CTATATTCGATGACAACAAAAGGATTATAATGCTATCTGATGCCATTCCTTCTATCGTTC
AAGTTCTCAGAGCGGGGAGCACGGAGGCAAAAGAGAATGCAGCCGCAACCATTTTTAGTT
TGTCGCTTGGAAACGAGAATAAAATACTAATAGGCGCGTCAGGAGCCATACCAGCTCTCA
TAGATTTGCTTCTGACAGGAAATACCAGAGGAAAAAAAGACGCTGCATCAGCATTGTTTA
ATTTGTGCATATATCAAGGAAACAAGGGTCGAGCTGTTCGTGCAGGGATTATACCAGCGC
TGCTGGAAATGCTAACGGATTCAAGCAGCTGCATGGTCGATGAACCTTTGACCATTCTTT
CTGTCCTAGCTAACAACCAAGAGGCTAAGGAGGCCATAGCAAAAACTAGCACAATCCCAG
TATTGATAGATCTTCTTAGGACAGGTCTATCTCGTAGTAAAGAGAATGCAGCTGCCATCT
TACTCTCGTTGTGCAAGAGAGATTCCGAGAACCTTTCTTGCCTTTGTAGGCTCGGTGCTG
TTATACCTCTTACACAGCTCACAATGAGTGGCACGGAGAGGGCCAAGAGGAAGGCGACTT
CACTGTTGGAGCATATTAGAAAGTCTCAGCAACATAGCACGCGCATTTAGGTACTTCTCG
TTATTTATCCTTTCATTCAGATCTGACCACGAATATTACACGTTATCTTTTACAGTGTGA
TCGACTTAAAACAAGCATGAGAACAAAGCCATTCTCATTGCTTTACAGTTCATATATATA
TATATATATATATCTAATTTACTCAGTTTTCGAGTGTGCCATAGATTGATATCTGTTTTT
CTTTTACTCATATCTGTTTTTCTTTTACTCGAACTACCAGTTCATTACATCTATTGCGAA
GATGATGTATAAACTAGTGTACGATACAGGACATTTTAATATATACATATATATATTTGG
AGAAGTGTGCTTTTTGTGTTGCTTGTCAATAACTTGTGTTTGTGGCATCTTCATTGAATT
AACCAAAAAGTTTGGTTATATGAATCTTGATATTCCCTTCTGAAACATAGCAATGGAATG
TTATACTATGGTAATGGAAGCAAGTTGAGCCTAAAGCATGTCTAGCAT