Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g008190.3.1
CDS Infomation

Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G10530.1)
Sequence

ATGGTGGTGAAGGTGGACAATACGGAAAGTATTCCTGCTACAGATGAGGTCATTTCTGAA
GAGATGGATATGAAGAAAAAGAAATACCTTAGGGGCGAAGCAGCGAATTTGAAGGATTTG
AAAGATAAAAAATTACAGGGTCAGCTTGCTGTGCAAGAAGAGTTATTTGGAAAATCTGCA
GCAGCTGCTGCGAAGGCTGAGAAGTGGCTTATGCCAAGTGAGGGTGGTTATCTAGAGGGT
GATGGTATTGAGAAGACATGGAGAATAAAGCAGGACGCAATTGCCAGTGAAGTTGACATT
TTGAGCTCCAGGAAACAATTTGATATTGTCTTACCAGATTTTGGTCCTTACACTCTTGAA
TTCACCCCTAGCGGTCGCTACATGGCTGCAGCTGGACGCAAGGGTCACATTGCTATTGTA
GATATGAAAAACATGAGCGCCATTAAAGAACTACAGGTCAGGGAAACAGTGCGTGATGTA
GTATTCTTGCATAATGAACTGTTTTTCGCTGCTGCTCAGAAGAAGTACCCGTATATATAC
AATAGAGAAGGCACGGAGCTCCACTGCATGAAGGAACATGGTGCTGTGCTAAAGCTTCAG
TTTTTAAGGAATCACTTCCTTTTGGCTTCTATAAACAAATTTGGTCAGCTGCATTATCAG
GATGTTACCACTGGACAAATGGTAGCTAATGTTCGAACTGGCTTGGGTCGTACTGATGTC
ATGCAAGTAAATCCCTTCAACGGTGTGATTGCTGTGGGCCATTCTGGTGGCACAGTCAGT
ATGTGGAAGCCTACAAGTGCTGCGCCCCTTGTGAAGATGCTTTGTCATCCTGGACCAGTT
ACGGCTCTGGCATTCCATCCTAATGGGCATTTAATGGCAACTGCTGGTATGGAGAGGAAA
ATAAAGATTTGGGATTTGAGGAAGTTTGAGGTTCTACAAACATTAACAGGTCACTGCAAG
TCCTTGGATTTTAGTCAAAAAGGTTTGCTTGCTACTGGAACCGGATCTTTTGTACAAGTT
TATGGAGATCTTTCTGGATCCCAGAATTATAGCCGTTATATGACCCACTCTGTTGCGAAA
GGATACCAAGTAAAGAAGGTGACATTCAGACCATACGAAGATGTTCTAGGCATAGGACAC
TCGATGGGTTGGTCTTCTATCTTAATTCCAGGATCCGGAGAACCCAACTTTGATTCTTGG
GTGGCAAATCCGTTTGAAACATCTAAACAAAGAAGAGAGAAGGAAATCCGCTCTCTTCTT
GATAAGCTCCCTCCAGAGACCATCATGTTGGATCCAACAAAGATTGGTTCAGTGCGACCA
GAAAGGAAGAAGGAAAAGCCATCAAAGGAGGATAGAGAAGCAGAAATGGAAGCTGCTATC
GAGGAAGCTAAAAATATTCATATGAAGAAGAAAACAAAAGGTAGAAGCAAGCCTAGTAAG
ATTGCAAAGAAGAAACAAGAAGCTGTTGAAAAAGCTAAGAAACCTTTCTTGGAGCAACAC
GCGAATAAGAAGAGGAAACCCACCGAGGAAACTCAGCTTCCAAAATCTTTAGAACGTTTC
GTTAGAAAGAAGGTAGCAGCATGA

Peptide Sequence

PEP ID

Solyc05g008190.3.1
PEP Infomation

Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G10530.1)
Sequence

MVVKVDNTESIPATDEVISEEMDMKKKKYLRGEAANLKDLKDKKLQGQLAVQEELFGKSA
AAAAKAEKWLMPSEGGYLEGDGIEKTWRIKQDAIASEVDILSSRKQFDIVLPDFGPYTLE
FTPSGRYMAAAGRKGHIAIVDMKNMSAIKELQVRETVRDVVFLHNELFFAAAQKKYPYIY
NREGTELHCMKEHGAVLKLQFLRNHFLLASINKFGQLHYQDVTTGQMVANVRTGLGRTDV
MQVNPFNGVIAVGHSGGTVSMWKPTSAAPLVKMLCHPGPVTALAFHPNGHLMATAGMERK
IKIWDLRKFEVLQTLTGHCKSLDFSQKGLLATGTGSFVQVYGDLSGSQNYSRYMTHSVAK
GYQVKKVTFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEIRSLL
DKLPPETIMLDPTKIGSVRPERKKEKPSKEDREAEMEAAIEEAKNIHMKKKTKGRSKPSK
IAKKKQEAVEKAKKPFLEQHANKKRKPTEETQLPKSLERFVRKKVAA*

Transcript Sequence

Transcript ID

Solyc05g008190.3.1
Transcript Infomation

Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G10530.1)
Sequence

TTATACCCTTTATTCCCCAAAACTTAAAACCCTAAACCCTTGCCGTCGTCAATTTCCGGC
GGTTCTTCCACGGCGGAGCTCCACCGTAATCTCAACTAATTTATTTTCCGTTCACATAGC
TTCGGAGGAAATTTTCAGGAGCGAAGATGGTGGTGAAGGTGGACAATACGGAAAGTATTC
CTGCTACAGATGAGGTCATTTCTGAAGAGATGGATATGAAGAAAAAGAAATACCTTAGGG
GCGAAGCAGCGAATTTGAAGGATTTGAAAGATAAAAAATTACAGGGTCAGCTTGCTGTGC
AAGAAGAGTTATTTGGAAAATCTGCAGCAGCTGCTGCGAAGGCTGAGAAGTGGCTTATGC
CAAGTGAGGGTGGTTATCTAGAGGGTGATGGTATTGAGAAGACATGGAGAATAAAGCAGG
ACGCAATTGCCAGTGAAGTTGACATTTTGAGCTCCAGGAAACAATTTGATATTGTCTTAC
CAGATTTTGGTCCTTACACTCTTGAATTCACCCCTAGCGGTCGCTACATGGCTGCAGCTG
GACGCAAGGGTCACATTGCTATTGTAGATATGAAAAACATGAGCGCCATTAAAGAACTAC
AGGTCAGGGAAACAGTGCGTGATGTAGTATTCTTGCATAATGAACTGTTTTTCGCTGCTG
CTCAGAAGAAGTACCCGTATATATACAATAGAGAAGGCACGGAGCTCCACTGCATGAAGG
AACATGGTGCTGTGCTAAAGCTTCAGTTTTTAAGGAATCACTTCCTTTTGGCTTCTATAA
ACAAATTTGGTCAGCTGCATTATCAGGATGTTACCACTGGACAAATGGTAGCTAATGTTC
GAACTGGCTTGGGTCGTACTGATGTCATGCAAGTAAATCCCTTCAACGGTGTGATTGCTG
TGGGCCATTCTGGTGGCACAGTCAGTATGTGGAAGCCTACAAGTGCTGCGCCCCTTGTGA
AGATGCTTTGTCATCCTGGACCAGTTACGGCTCTGGCATTCCATCCTAATGGGCATTTAA
TGGCAACTGCTGGTATGGAGAGGAAAATAAAGATTTGGGATTTGAGGAAGTTTGAGGTTC
TACAAACATTAACAGGTCACTGCAAGTCCTTGGATTTTAGTCAAAAAGGTTTGCTTGCTA
CTGGAACCGGATCTTTTGTACAAGTTTATGGAGATCTTTCTGGATCCCAGAATTATAGCC
GTTATATGACCCACTCTGTTGCGAAAGGATACCAAGTAAAGAAGGTGACATTCAGACCAT
ACGAAGATGTTCTAGGCATAGGACACTCGATGGGTTGGTCTTCTATCTTAATTCCAGGAT
CCGGAGAACCCAACTTTGATTCTTGGGTGGCAAATCCGTTTGAAACATCTAAACAAAGAA
GAGAGAAGGAAATCCGCTCTCTTCTTGATAAGCTCCCTCCAGAGACCATCATGTTGGATC
CAACAAAGATTGGTTCAGTGCGACCAGAAAGGAAGAAGGAAAAGCCATCAAAGGAGGATA
GAGAAGCAGAAATGGAAGCTGCTATCGAGGAAGCTAAAAATATTCATATGAAGAAGAAAA
CAAAAGGTAGAAGCAAGCCTAGTAAGATTGCAAAGAAGAAACAAGAAGCTGTTGAAAAAG
CTAAGAAACCTTTCTTGGAGCAACACGCGAATAAGAAGAGGAAACCCACCGAGGAAACTC
AGCTTCCAAAATCTTTAGAACGTTTCGTTAGAAAGAAGGTAGCAGCATGATCAGTTTTGT
CCACTAGACTGTTCTTACCCTTTCTTTGCATTTGCATTTGCATTTGATTCTTGTTTTGGC
TTTCCTTGAGGGAATTGCTTATAGAAATTGAAGAAGCAAGTGTTGTAATTCTTCAGATCA
AGTTTTCCCCTTTTCTCATTGTTTTACATTGTTTTACTGTTGAGGTTAAAAGTTTAGGCA
TTTTTGTTTCAACTTAAAGGTTTCTAGCTTGAAGTACAGGCAATGTAAAATCTATATAGT
AGACAATGTATGAATCAATCAATCCTAGCCATGGTTTACTTGTTTATTTTCCATTCAATT
TTTGTCAGCTATCCATTTTTCCTTCATTTTGATTCATGACATGTAGTGCATCGAATCCAT
AAAAGAACAGAGGTAGAGAGTTTATTTTCGATAAATCTTGGCTCGAGGAAAAACACAACC
TTACATCACCAAGACAAGGTTATAAATCAGGTTTCTTCATTGTAACCAATTTATGAATTA
TGACAGCAAGCTATAGGTGAAACTTATATCTTTTCGTCTGATTGAACAGTGGTACTCTGA
ATTAGCATACAATGAATCTTATTTTCACATTGTGCTATACTGCTGCTTCTACACTTTTGA
GTCTACAACAAAGTATAATCAATGATCATGCTCGTTTTGTACGTCGTCCAACTTCAAGGG
CGAGCTCTGTGTCGATTTTCAGAGAAATGTCAAGTGCTTTCACAGAATGTGTTAAGGCAC
CGCTGCAAACATTTTCAAATGTATGATATAAGTATCAAAACAAACTTTTGTGTGCCTAAT
ACATATGGACTCAAACAAAAGATAGATACTTTTATCAAAATATCGTTACTGGACGAAACA
AATATCAGACTTCCTCCCAGTATG