Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g006540.3.1
CDS Infomation	Paired amphipathic helix SIN3-like protein (AHRD V3.3 *** G7LEQ2_MEDTR)
Sequence	ATGAGTTCTCAACTCAAACGCCCTGTTGTTGTTTCATCCCGTGGTGAACCTTCTGGGCAA TCTCCTATGATGGGGGGAGGTAGCGCGAACAAGCTAACAACAAACGATGCACTTTCGTAT CTCAAGTCAGTGAAGGAAATTTTTCAGGACAGAAGGGACAAGTATGATGAGTTTCTTGAT GTCATGAAAGATTTCAAGTCTCAAAGAATTGATACTTCTGGTGTCATAGCGAGGGTGAAG GATTTATTCAAAGGGCATCGAACCTTAATTTTGGGTTTCAATACATTTTTGCCCAAGGGA TATGAGATCACTAATCCAGAGGATGAAGCTCCAGTGAAAAAACCAGTTGAATTTGAAGAA GCAATCAGTTTTGTAAACAAGATAAAGACTAGATTTCAAGGCGATGATTTCGTATATAAG TCGTTTCTTGATATTTTGAATTTGTATAGAAAGGAAAACAAGGCTATTGCAGAAGTTTAT AACGAGGTCTCCTACCTTTTCCGTGGCCATGCTGATTTGCTTGAAGAGTTCACCCACTTT TTACCTGATGCCATGGCAGCAGCCCGAGCTCGTAATGCTCAAGCTCATAGGGCCCCTATC ATGCGTTATGATGAGAAAAGCTCTTCGATGACTGCAGCAAGGCACATGCATGTTGAGAAG GCTACTTCACTAGTTGTCCGGGAGAATGCTGTTGATCGGTCTGATCCAGAATATGAAGAA ACAACGATGAGAACTGAAAGGGAAAGAAGGGAACGACAGTATGAGGATAGAGAGCTGGAC AGAAAATCTGTTCATAGAGATGTTGCTGTTGACCAGTTTGAACCTAGTATGCAGGACCAT GGTTTTGCTTACTGTGAGCGGGTTAAGGAAAGGTTACAGGATATGGGAGAACGAAAACAA TTTTTTAAGTGCCTTAATTTCTATTGCAAAGAAGGGGTTACAAGAACACAATTACAATCT GGGGTTAGCAGCTTACTTCAGAAACATCCAGATCTCATGGAAGGATTTGATGAATTTATT TCTCATTGTGAGAGGACAGATGGATATCTTGCTGCTATTCTGAGCAAAACACAGTCCTTA TGGAGTGATGAACCCAATCCCAAGTCTGAGAAAGTAGAAGACAGGGACAAAGACCGAGAT TGCGAGTGGGAAGAAAGGAATAGACTTCGTGAGACAAGAGAAAGAGATAGACCTGTTGCT TATGCAACTAGAGATGCACAAGGGCAGAAGATGTCGTTGTATAGCAAGGATAAATACGCA GCAAAACCTATACATGAACTTGATCTCTCTAACTGTGACAGTTGCTCCCCAAGTTATCGG CTTCTTCCAAAGAATTATCCAATTCCTTTAGCGAGTCAGAAAACAGATATTGGTGCCGAA GTATTAAATGATCATTGGGTATCCGTGACATCAGGAAGTGAGGATTACTCTTTTAAACAT ATGCGCAAAAACCAGTATGAAGAGAGCTTGTTCCGATGCGAAGATGACAGGTTTGAGCTG GATATGCTTTTAGAGTCTGTCAATGCAACAACAAGACGCGTTGAAGAATTGCTCAACAAG ATCAATGATAATACTATTTCAAGTGATAGTCATATCCGTATTGAAGAACATTTTACTGCT CTGAATCTAAGGTGCATTGAACGTCTTTATGGTGACCATGGGCTTGATGTTATGGATGTG TTGAGGAAGAATGCACCACTTGCCCTTCCAGTTATACTTACTCGCTTAAAGCAGAAACAA GAGGAGTGGGCGAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCTGAGATTTATGCTAAG AACTATCACAAATCACTGGATCATCGTAGCTTTTATTTCAAGCAGCAGGACACAAAAAGC TTGAGCACTAAAGCACTGCTGGCTGAGATCAAAGAAATTAGTGAAAATAAGTGCAAAGAA GATGATGTGCTGCTATCTGTTGCTGCTGGAAATGGGCAACCAATTATCACACATCTGGAG TTCGAGTATCCTGATTCTGACATCCACGAAGACCTTTATCAAATCATCAAGTATTCATGT ATAGAAGTTTGTACAAGAGAACAGTTGGATAAAGTCATGAAGATTTGGACCACCTTCCTG GAACCAATATTTGGTGTTCTTCGTCCGCCTCAGGGTGAAGTGGATGGTGTAGATGTTGAA AAGGCTAAAAATCTTAATGCTAAAGATAAAACAGCAATTGAAGGGAAAAAGGTTGGTAGC CCTGCCAGTGGCTCGGGCATGAATTGCAGACAAAGCAGTTCCAGGAATGGAGATGAACTG CCTACATCTGAGCATGTAATTTCTTCCAGAGTTCAGATAGCAGATGGTGAAAATGGGTTC AAGGATGATAGCTCTCCTAATGTAAATGGTGTAATGCTGAAAATCGCAACTTCGAAGAAC CTCCTTCATCATGGAAAATCAGACGCTAATCTAAACATGGCAGATGGGGCATCTGGCCTC AGCAGAGAGGCTTTTTGTGCTGACCCGCTAGTGCTTTCAAACAGCACTACTGTGGGGGAA AGCCATGGAAGAGTCTGTATAGAAACTGCTTCAGGGCATGGTGCAGGCACTTCCAGACCT AGTGGTTCCACAATCAAACGTGAACCTGAGATAGTATCATCTAATGACTCAAAGGACGGA GGGTTCGTGGACCCAAAGGCAGAAGGTATCAAAGTTGAGAAATGTCTTGAGGAATCCGTA GGAAAATGTAAACTTGAGCGAGAAGAGGGTGAATTAACTCCAAATGGTGATTTTGAGGAT AATTTTACACCATCGAGTGAAGGTGGTCAAAATGTATCGCATAGTTTAAAGGGAAGTTCA AGTAGTAAGCTATACCAAAGTGGACATGGAGAAGAAAAAAATTGCGGTGGAGACAGAGGA TGTGAGAATGATGCTGATGAAGAAGGCGAAGCGAGTGCTCATGGGACATCAGAGGACAGT GAGAATGCTTCTGAGAATTGTGATGTTTCAGGTAGTGAGTCTGCTAATGGAGAAGGTTCT CATGAAGAGCGTGAAGAAGATGGGGACAATGATGTGAATGATAACAAGGTAGAGAGTGAA GGAGAGGTGGAAGGTACTGCTGATGCCCATGATGCTGAAGGAGATGGTGCTGTTATGCCA TTTTCAGAACGCCTTCTACATACATCCAGGCCTCTAACCAAGCACGTTCCTTCTATATTT CATGTCAGGGAGAAGGAATCACGTATATTTTATGGAAATGATTCATTTTATGTGCTGTTC AGACTTCACCAGACATTGTATGAAAGACTACAGAAAGCAAAATCACATTCTTCATCAGCT GAACACAGATGGAGAGTCTCGAATGCAATCAACCCCACTGAATCATATTCCAGATTCAGG AGTGCACTTTATAACCTACTTGATGGTTCCTCTGACAATGCAAAGTTCGAGGATGACTGC CGAGCTATTATTGGGGCTCAGTCATATCTTCTCTTCACCTTAGACAAGCTGATATACAAA ATTGTAAAACAGCTTCAGACGATTGCAACTGATGAGTTGGAAGGTAAACTTCTCCAACTA TATACATATGAAATCTCAAGAAAGTCTAGCACATTTTCAGATGTAGTTTACCATGAAAAT GTGCGTGCCCTTCTTCATGACGAGACCATATACAGAATAGCATGTTCATCTAAAAAAACG CGTCTTTCTATACAACTCATGGACTATGTTTACGACAAGCCTGAGATGTCTGCTGTTACA ATGGACCCAAATTTTGCAGCTTATATGAGCAATGAACTCCTCTCTGTTATTCCTCAGAAG GAGAACCCTGGGGTGTTCTTGACAAGAAATAAACGGAAGTCAGGAGTTAGAGATGAAACT TTTACATCCGAGGCTATGGAAGGACTTAAATTTTTTAATGGTCTAGAATGTAAGATAGCA TGCAGTTCATCAAAGGTCTCTTACGTCTTAGACACTGAAGATTTCTTGATACGTTCAAGA AAAAGGCGAAGAATATTAAAGGAGAATCTTTTGTCTAATGGCCATTCAGAGTGTTTGAAC AAGTCTAATAAAATACAACGCTTCCGCAGATTGCTTTCAGTTGAACATGCACATTTTGCA TAA

Peptide Sequence

PEP ID	Solyc05g006540.3.1
PEP Infomation	Paired amphipathic helix SIN3-like protein (AHRD V3.3 *** G7LEQ2_MEDTR)
Sequence	MSSQLKRPVVVSSRGEPSGQSPMMGGGSANKLTTNDALSYLKSVKEIFQDRRDKYDEFLD VMKDFKSQRIDTSGVIARVKDLFKGHRTLILGFNTFLPKGYEITNPEDEAPVKKPVEFEE AISFVNKIKTRFQGDDFVYKSFLDILNLYRKENKAIAEVYNEVSYLFRGHADLLEEFTHF LPDAMAAARARNAQAHRAPIMRYDEKSSSMTAARHMHVEKATSLVVRENAVDRSDPEYEE TTMRTERERRERQYEDRELDRKSVHRDVAVDQFEPSMQDHGFAYCERVKERLQDMGERKQ FFKCLNFYCKEGVTRTQLQSGVSSLLQKHPDLMEGFDEFISHCERTDGYLAAILSKTQSL WSDEPNPKSEKVEDRDKDRDCEWEERNRLRETRERDRPVAYATRDAQGQKMSLYSKDKYA AKPIHELDLSNCDSCSPSYRLLPKNYPIPLASQKTDIGAEVLNDHWVSVTSGSEDYSFKH MRKNQYEESLFRCEDDRFELDMLLESVNATTRRVEELLNKINDNTISSDSHIRIEEHFTA LNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAK NYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISENKCKEDDVLLSVAAGNGQPIITHLE FEYPDSDIHEDLYQIIKYSCIEVCTREQLDKVMKIWTTFLEPIFGVLRPPQGEVDGVDVE KAKNLNAKDKTAIEGKKVGSPASGSGMNCRQSSSRNGDELPTSEHVISSRVQIADGENGF KDDSSPNVNGVMLKIATSKNLLHHGKSDANLNMADGASGLSREAFCADPLVLSNSTTVGE SHGRVCIETASGHGAGTSRPSGSTIKREPEIVSSNDSKDGGFVDPKAEGIKVEKCLEESV GKCKLEREEGELTPNGDFEDNFTPSSEGGQNVSHSLKGSSSSKLYQSGHGEEKNCGGDRG CENDADEEGEASAHGTSEDSENASENCDVSGSESANGEGSHEEREEDGDNDVNDNKVESE GEVEGTADAHDAEGDGAVMPFSERLLHTSRPLTKHVPSIFHVREKESRIFYGNDSFYVLF RLHQTLYERLQKAKSHSSSAEHRWRVSNAINPTESYSRFRSALYNLLDGSSDNAKFEDDC RAIIGAQSYLLFTLDKLIYKIVKQLQTIATDELEGKLLQLYTYEISRKSSTFSDVVYHEN VRALLHDETIYRIACSSKKTRLSIQLMDYVYDKPEMSAVTMDPNFAAYMSNELLSVIPQK ENPGVFLTRNKRKSGVRDETFTSEAMEGLKFFNGLECKIACSSSKVSYVLDTEDFLIRSR KRRRILKENLLSNGHSECLNKSNKIQRFRRLLSVEHAHFA*

Transcript Sequence

Transcript ID	Solyc05g006540.3.1
Transcript Infomation	Paired amphipathic helix SIN3-like protein (AHRD V3.3 *** G7LEQ2_MEDTR)
Sequence	TTTTCTTCTCCTTCTAGTATTAATATTTTTTATTTAAAAAAATAATTATTATCAAAAAAA AAAAAAACAGCTAAGACTTATACAAATATTATAAACTCTTCTCTCTATTTTTTTTCTCCA TTCATATTGTTGTAAAGCTATAAAGAATTGAATTTTTTTTTTTTTACATATTCATCACTT CTACACAGTTTTTTTTAAAATTTTTTTTTTTTGAAGTGTTTTGGTTTCTTCCATTTGGAG AGAAATTTTCAACCGCCATTAACGGACTCATTTGAAGATCTCTGTAATAATTCTTCGCTT TTTTTAATTGGAGGATTTGGAGAGCTAAACAAAAGCGTTGATTTTTTTGTTTTTTTATTT AACAATGGTGAAGAGATATGAAGATTTGTTGTTGTAGAGATGAGTTCTCAACTCAAACGC CCTGTTGTTGTTTCATCCCGTGGTGAACCTTCTGGGCAATCTCCTATGATGGGGGGAGGT AGCGCGAACAAGCTAACAACAAACGATGCACTTTCGTATCTCAAGTCAGTGAAGGAAATT TTTCAGGACAGAAGGGACAAGTATGATGAGTTTCTTGATGTCATGAAAGATTTCAAGTCT CAAAGAATTGATACTTCTGGTGTCATAGCGAGGGTGAAGGATTTATTCAAAGGGCATCGA ACCTTAATTTTGGGTTTCAATACATTTTTGCCCAAGGGATATGAGATCACTAATCCAGAG GATGAAGCTCCAGTGAAAAAACCAGTTGAATTTGAAGAAGCAATCAGTTTTGTAAACAAG ATAAAGACTAGATTTCAAGGCGATGATTTCGTATATAAGTCGTTTCTTGATATTTTGAAT TTGTATAGAAAGGAAAACAAGGCTATTGCAGAAGTTTATAACGAGGTCTCCTACCTTTTC CGTGGCCATGCTGATTTGCTTGAAGAGTTCACCCACTTTTTACCTGATGCCATGGCAGCA GCCCGAGCTCGTAATGCTCAAGCTCATAGGGCCCCTATCATGCGTTATGATGAGAAAAGC TCTTCGATGACTGCAGCAAGGCACATGCATGTTGAGAAGGCTACTTCACTAGTTGTCCGG GAGAATGCTGTTGATCGGTCTGATCCAGAATATGAAGAAACAACGATGAGAACTGAAAGG GAAAGAAGGGAACGACAGTATGAGGATAGAGAGCTGGACAGAAAATCTGTTCATAGAGAT GTTGCTGTTGACCAGTTTGAACCTAGTATGCAGGACCATGGTTTTGCTTACTGTGAGCGG GTTAAGGAAAGGTTACAGGATATGGGAGAACGAAAACAATTTTTTAAGTGCCTTAATTTC TATTGCAAAGAAGGGGTTACAAGAACACAATTACAATCTGGGGTTAGCAGCTTACTTCAG AAACATCCAGATCTCATGGAAGGATTTGATGAATTTATTTCTCATTGTGAGAGGACAGAT GGATATCTTGCTGCTATTCTGAGCAAAACACAGTCCTTATGGAGTGATGAACCCAATCCC AAGTCTGAGAAAGTAGAAGACAGGGACAAAGACCGAGATTGCGAGTGGGAAGAAAGGAAT AGACTTCGTGAGACAAGAGAAAGAGATAGACCTGTTGCTTATGCAACTAGAGATGCACAA GGGCAGAAGATGTCGTTGTATAGCAAGGATAAATACGCAGCAAAACCTATACATGAACTT GATCTCTCTAACTGTGACAGTTGCTCCCCAAGTTATCGGCTTCTTCCAAAGAATTATCCA ATTCCTTTAGCGAGTCAGAAAACAGATATTGGTGCCGAAGTATTAAATGATCATTGGGTA TCCGTGACATCAGGAAGTGAGGATTACTCTTTTAAACATATGCGCAAAAACCAGTATGAA GAGAGCTTGTTCCGATGCGAAGATGACAGGTTTGAGCTGGATATGCTTTTAGAGTCTGTC AATGCAACAACAAGACGCGTTGAAGAATTGCTCAACAAGATCAATGATAATACTATTTCA AGTGATAGTCATATCCGTATTGAAGAACATTTTACTGCTCTGAATCTAAGGTGCATTGAA CGTCTTTATGGTGACCATGGGCTTGATGTTATGGATGTGTTGAGGAAGAATGCACCACTT GCCCTTCCAGTTATACTTACTCGCTTAAAGCAGAAACAAGAGGAGTGGGCGAGGTGTCGT TCTGATTTTAATAAAGTTTGGGCTGAGATTTATGCTAAGAACTATCACAAATCACTGGAT CATCGTAGCTTTTATTTCAAGCAGCAGGACACAAAAAGCTTGAGCACTAAAGCACTGCTG GCTGAGATCAAAGAAATTAGTGAAAATAAGTGCAAAGAAGATGATGTGCTGCTATCTGTT GCTGCTGGAAATGGGCAACCAATTATCACACATCTGGAGTTCGAGTATCCTGATTCTGAC ATCCACGAAGACCTTTATCAAATCATCAAGTATTCATGTATAGAAGTTTGTACAAGAGAA CAGTTGGATAAAGTCATGAAGATTTGGACCACCTTCCTGGAACCAATATTTGGTGTTCTT CGTCCGCCTCAGGGTGAAGTGGATGGTGTAGATGTTGAAAAGGCTAAAAATCTTAATGCT AAAGATAAAACAGCAATTGAAGGGAAAAAGGTTGGTAGCCCTGCCAGTGGCTCGGGCATG AATTGCAGACAAAGCAGTTCCAGGAATGGAGATGAACTGCCTACATCTGAGCATGTAATT TCTTCCAGAGTTCAGATAGCAGATGGTGAAAATGGGTTCAAGGATGATAGCTCTCCTAAT GTAAATGGTGTAATGCTGAAAATCGCAACTTCGAAGAACCTCCTTCATCATGGAAAATCA GACGCTAATCTAAACATGGCAGATGGGGCATCTGGCCTCAGCAGAGAGGCTTTTTGTGCT GACCCGCTAGTGCTTTCAAACAGCACTACTGTGGGGGAAAGCCATGGAAGAGTCTGTATA GAAACTGCTTCAGGGCATGGTGCAGGCACTTCCAGACCTAGTGGTTCCACAATCAAACGT GAACCTGAGATAGTATCATCTAATGACTCAAAGGACGGAGGGTTCGTGGACCCAAAGGCA GAAGGTATCAAAGTTGAGAAATGTCTTGAGGAATCCGTAGGAAAATGTAAACTTGAGCGA GAAGAGGGTGAATTAACTCCAAATGGTGATTTTGAGGATAATTTTACACCATCGAGTGAA GGTGGTCAAAATGTATCGCATAGTTTAAAGGGAAGTTCAAGTAGTAAGCTATACCAAAGT GGACATGGAGAAGAAAAAAATTGCGGTGGAGACAGAGGATGTGAGAATGATGCTGATGAA GAAGGCGAAGCGAGTGCTCATGGGACATCAGAGGACAGTGAGAATGCTTCTGAGAATTGT GATGTTTCAGGTAGTGAGTCTGCTAATGGAGAAGGTTCTCATGAAGAGCGTGAAGAAGAT GGGGACAATGATGTGAATGATAACAAGGTAGAGAGTGAAGGAGAGGTGGAAGGTACTGCT GATGCCCATGATGCTGAAGGAGATGGTGCTGTTATGCCATTTTCAGAACGCCTTCTACAT ACATCCAGGCCTCTAACCAAGCACGTTCCTTCTATATTTCATGTCAGGGAGAAGGAATCA CGTATATTTTATGGAAATGATTCATTTTATGTGCTGTTCAGACTTCACCAGACATTGTAT GAAAGACTACAGAAAGCAAAATCACATTCTTCATCAGCTGAACACAGATGGAGAGTCTCG AATGCAATCAACCCCACTGAATCATATTCCAGATTCAGGAGTGCACTTTATAACCTACTT GATGGTTCCTCTGACAATGCAAAGTTCGAGGATGACTGCCGAGCTATTATTGGGGCTCAG TCATATCTTCTCTTCACCTTAGACAAGCTGATATACAAAATTGTAAAACAGCTTCAGACG ATTGCAACTGATGAGTTGGAAGGTAAACTTCTCCAACTATATACATATGAAATCTCAAGA AAGTCTAGCACATTTTCAGATGTAGTTTACCATGAAAATGTGCGTGCCCTTCTTCATGAC GAGACCATATACAGAATAGCATGTTCATCTAAAAAAACGCGTCTTTCTATACAACTCATG GACTATGTTTACGACAAGCCTGAGATGTCTGCTGTTACAATGGACCCAAATTTTGCAGCT TATATGAGCAATGAACTCCTCTCTGTTATTCCTCAGAAGGAGAACCCTGGGGTGTTCTTG ACAAGAAATAAACGGAAGTCAGGAGTTAGAGATGAAACTTTTACATCCGAGGCTATGGAA GGACTTAAATTTTTTAATGGTCTAGAATGTAAGATAGCATGCAGTTCATCAAAGGTCTCT TACGTCTTAGACACTGAAGATTTCTTGATACGTTCAAGAAAAAGGCGAAGAATATTAAAG GAGAATCTTTTGTCTAATGGCCATTCAGAGTGTTTGAACAAGTCTAATAAAATACAACGC TTCCGCAGATTGCTTTCAGTTGAACATGCACATTTTGCATAAAAAGGTAATCTACAGCTT CAGTTAGTCATAGTTATAGTTCTATGACCACACAAAAATGGAGAAATGAAGTCCAAAGGT AGAATTTTCACACATTTTACATGGCTCTCGAAGGTGATTTTATTGCTTGTGATATTTTTT TCGCGCTTATATTTGTGGAAATTCAAATTTTGGACAGTGATACCATAGATTTTTCTAGCT TCTCGTACTGAATAAATGATCCAACTAACAGCTCGGAAAATTTGTAGAATGTCATTCTAA ATTTTGTTCCCAGATTGTTGTATATATTTTTTCCTTTCTCTTATAGTAAAAACACTCATA TTATCAATTCCATGATCTGTTTTTTGTTACAAAAAAAAAAAAAAAAGGACCACAAGTTGT CCTTACTTCCAACGGCAATTCACCAAGAAAAACTAATCAGCAACTCTAACCAGAGTACTA CACGTGGGCAAAATCTCGAAATGGAGAGCACTAAATATGTAAATGCCATCACTAAAGCAA AAGACAATTATTCTTGCTTACTCCTTATAGTGAGCTATCTTAAACACAGGAAAGAATGTC CCGTCTACCTAAATATATATAAGGTCCTTATGCCTCCACATACGAATATCTATTGGCCAA GAACAATAAAATTTTACTTTTTAATAAACGATTATGCTAAATGGAAGATCCACATATTCG AATGTTCTCCTTCGTCCCTCCTTCCACATCCACCCTTACCCCCACCCTGTGGACCCGAAA CAAACATGAAATGCAAAAGCAGATGCTAACAATTATCAACTCGAGGAGGAAATGCCCCTA TTAGATAAAAACCATTCAACAAAAGAAAAACAATCACACCCGAAAATGAAGTTGATTGAC AGGGTACCTCATCATCTTCAGATAGACTACTCAATACTGGAACATTTAAACTCCAAGACC ATGTCTCCAAAGAACCTTCCATACACCATAGACCTCCAAGTTCAGACACAGCTAACTTCT GCCACTGCATCTCTGCCTTATCAAGAAGCTCGGCCATAATTTCACGAGGCAAAGCATCAG CAAGAGTTAAGGCGGCATTTGGAAAGCCTGTTCTGTAAACCGTTCTAATCCACTTCTCTG TGAAAAGATACCAAGAGTTATCTGAACCAAGAGCCACATGATAAGACGGTTTAACATCTT CACCTCCATTATCACCA