Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g006130.3.1
CDS Infomation

RNA helicase DEAD17
Sequence

ATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAAC
CTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTT
GGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCT
GAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCT
AGCAGTGGCCTTCATAGACCATCTTTAATTCAGGCAGCTTGTATACCAAGTATACTTTCA
GGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTG
CCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGAT
GCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAA
GTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCA
GCTGTTTGTGGCCGACAGGTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCG
GCAGCACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTT
ATACGAAGTGTTAAATATGTGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTC
CAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGT
TCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTA
AAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAA
GATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGA
AGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCA
GCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCT
GAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAGGTTGGAGCAAAGG
TGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGG
AATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTT
GACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTAC
CATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGT
GGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACAT
GTTATTCAGGCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACA
GCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTA
GTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTGGAGAAAGCATTTAGCAGA
AAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCACACATGAGGTGA

Peptide Sequence

PEP ID

Solyc05g006130.3.1
PEP Infomation

RNA helicase DEAD17
Sequence

MILQHSISICKLWRSSSPPNLYLFRPFVAYQPHCCRIRAFGSAVSASKVVETNTNETFFA
EESVSWTSLGVSESLSRALSSSGLHRPSLIQAACIPSILSGVDVVVAAETGSGKTHGYLV
PLIDKLCQISDSSGAITGQDARKHNRLSLVLCPNVMLCEQVVRMANSLCNDSGTPLLSIA
AVCGRQVWPVKEPDVMVSTPAALLNYLYSIDPERRRRSEFIRSVKYVVFDEADMLLCGSF
QNQVVRLINMLRFDEKQLSRSKNSGAEMSSTSDLEEFRDLKADYGEDADEVEDEDEDEDE
DTEVGKDRANLETDTKGLKRRDWRRVRKIYERSKQYIFVAATLPENGKRTAGGVLKRMFP
EATWVSGNYLHQHSPRLEQRWIEVSVDTQVDILINAVENGNSMADSSPGVLRTMVFANTV
DAVEAVANILTRVGLECFRYHSDSSLEERTKNLLDFQQKGGVFVCTDAAARGIDIPNVSH
VIQAEFATSAVDFLHRVGRTARAGQPGLVTSLYSESNRDLVAAIRHAEKIEEPVEKAFSR
KRSFRNKIKKRGREASHMR*

Transcript Sequence

Transcript ID

Solyc05g006130.3.1
Transcript Infomation

RNA helicase DEAD17
Sequence

TTACTAATAATACCTTAAACCCTTCAAAAAACCCATAATAGCACACCATTTTCTCTGTAG
CTGTTTATAAAGAAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGAT
TTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTA
TTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTC
TGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGA
AAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAG
TGGCCTTCATAGACCATCTTTAATTCAGGCAGCTTGTATACCAAGTATACTTTCAGGTGT
TGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACT
GATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAG
GAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAAGTGGT
TCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGT
TTGTGGCCGACAGGTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGC
ACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTTATACG
AAGTGTTAAATATGTGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAA
CCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAA
AAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGC
AGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATAC
TGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGA
TTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGAC
CCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGC
TACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAGGTTGGAGCAAAGGTGGAT
TGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTC
TATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGC
TGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAG
TGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGT
TTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTAT
TCAGGCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAG
AGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGC
TGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTGGAGAAAGCATTTAGCAGAAAAAG
GAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCACACATGAGGTGAAAAAT
GTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTG
TTTGTATTTTATAGTGTTATTGTAATATACTGTAAAAGAAATTAATTAGTTCAGAGTATT
TAATATGAAAGTTCACACATTTTCCCAGTCTCTTAATCATGAAGTGAAGTTGAATATAAA
GATCACACAAACAA