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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005770.3.1
CDS Infomation

NHL repeat-containing protein (AHRD V3.3 *** D7KNK1_ARALL)
Sequence

ATGGCTTCACTGATTTCTACTCTCTGTATCTTCTTCTTGTTAAATATAAGTCTTACCCCA
GTTCTTGGTGAAGTGATCTTTGAAGATGGCTACTCAGTCAGCACAGTGATTGATGGCAAC
AAGATCAAAATTAACCCTTACTCCATCATCCCTGTATCTGGTGATACTCATTTCATCATT
CTTGATTCTTCTGCCAGTACTTTTTACACATTATCATACAACAAAGACTCAGATACTACT
GTTACTAAGTTAACTGGTGATGGCATTGGCTACGCTGATGGTTCTCTGGATAAGGCTAGG
TTCAACAAGCCTAAAAGCTTTGCTGTTGATTCAAAAGGGAATATTTATGTTGCTGATATG
AAGAACATGCATGCAATTAGAAAGATTAGCAAGTCAGGTGTTACTACAATAGCAGGAGGT
TATTCAAAAACAGCAGGCCGTGCTGATGGACCTGGATTAAATGCCTCATTCTCGGATGAT
TATGAGCTTTCTTTTATTCCTAAAAGATGCGCTCTAATGATCTCTGACCATGGTAATAGA
TTAGTCCGCGAAATACAACTTAAAGCCGAGGATTGTTCAAGAGATTCTCATTCTGATCTA
AGAGCAGTTTCTACATGGCTCTTAACCGTGGGACTTCCCTGCTTGGTCTGCTTGATTATT
GGGTTGGTTATTCGTCCTTACGTCATCCCAAATGATTATGTCAGTCGTCTTCAGCACAAC
ATGACATGGAAGCACTTCCTAATCAATCTGGAGAGACAAGTTCTGATGTTCTGCTTCGTC
ATCAGAAGCGTAATTGTTGATTCAAAAATCTATTCACTTTTAAGGCAGCTCGTATTGCTT
AGTTTCTCTCATCTACGTTTAATGTTTAGTCCTAAAGTAGCAGTAGCACGCCAGACTTCT
CGTAGACAACTAGCACCTCTCATAAATTTGCACGACTTTGAAAGCAAAGAATCACCAAAC
TCGCCAGTGGTAGCTAACAGTTTAGAAGATCTGATAACTTTTGATGGAAGTTTAGACAAC
TCTGAGCTGACTACTAATCAAGATGATGCGGTGAAGGGAAGTACCGATGTTTCTGGTGTA
GATAGCATGATATTAGCTAACATAAAAGTGTTTGCAGAACAAGGGAATGCTTCTACAGGC
CCTGAAGTTTCTAAGAGCATTTTGAGCTTAGGTAACCAAAAAAAGAAAGTAAATTAG

Peptide Sequence

PEP ID

Solyc05g005770.3.1
PEP Infomation

NHL repeat-containing protein (AHRD V3.3 *** D7KNK1_ARALL)
Sequence

MASLISTLCIFFLLNISLTPVLGEVIFEDGYSVSTVIDGNKIKINPYSIIPVSGDTHFII
LDSSASTFYTLSYNKDSDTTVTKLTGDGIGYADGSLDKARFNKPKSFAVDSKGNIYVADM
KNMHAIRKISKSGVTTIAGGYSKTAGRADGPGLNASFSDDYELSFIPKRCALMISDHGNR
LVREIQLKAEDCSRDSHSDLRAVSTWLLTVGLPCLVCLIIGLVIRPYVIPNDYVSRLQHN
MTWKHFLINLERQVLMFCFVIRSVIVDSKIYSLLRQLVLLSFSHLRLMFSPKVAVARQTS
RRQLAPLINLHDFESKESPNSPVVANSLEDLITFDGSLDNSELTTNQDDAVKGSTDVSGV
DSMILANIKVFAEQGNASTGPEVSKSILSLGNQKKKVN*

Transcript Sequence

Transcript ID

Solyc05g005770.3.1
Transcript Infomation

NHL repeat-containing protein (AHRD V3.3 *** D7KNK1_ARALL)
Sequence

TTTTGTACTAGTATTTATCACTATAATCACTTTTTTTTTCCTTTTAAAACAATCACTTTT
GCCTTGGATTCCTTTGTTAAAGCTATATACCTAGTTGAAAATTAACCCTATTTCTGAAGC
AAAGGAAAAAGAAGTTGTAATTTTTTCATCAAAATCTTTGATCTCATGGCTTCACTGATT
TCTACTCTCTGTATCTTCTTCTTGTTAAATATAAGTCTTACCCCAGTTCTTGGTGAAGTG
ATCTTTGAAGATGGCTACTCAGTCAGCACAGTGATTGATGGCAACAAGATCAAAATTAAC
CCTTACTCCATCATCCCTGTATCTGGTGATACTCATTTCATCATTCTTGATTCTTCTGCC
AGTACTTTTTACACATTATCATACAACAAAGACTCAGATACTACTGTTACTAAGTTAACT
GGTGATGGCATTGGCTACGCTGATGGTTCTCTGGATAAGGCTAGGTTCAACAAGCCTAAA
AGCTTTGCTGTTGATTCAAAAGGGAATATTTATGTTGCTGATATGAAGAACATGCATGCA
ATTAGAAAGATTAGCAAGTCAGGTGTTACTACAATAGCAGGAGGTTATTCAAAAACAGCA
GGCCGTGCTGATGGACCTGGATTAAATGCCTCATTCTCGGATGATTATGAGCTTTCTTTT
ATTCCTAAAAGATGCGCTCTAATGATCTCTGACCATGGTAATAGATTAGTCCGCGAAATA
CAACTTAAAGCCGAGGATTGTTCAAGAGATTCTCATTCTGATCTAAGAGCAGTTTCTACA
TGGCTCTTAACCGTGGGACTTCCCTGCTTGGTCTGCTTGATTATTGGGTTGGTTATTCGT
CCTTACGTCATCCCAAATGATTATGTCAGTCGTCTTCAGCACAACATGACATGGAAGCAC
TTCCTAATCAATCTGGAGAGACAAGTTCTGATGTTCTGCTTCGTCATCAGAAGCGTAATT
GTTGATTCAAAAATCTATTCACTTTTAAGGCAGCTCGTATTGCTTAGTTTCTCTCATCTA
CGTTTAATGTTTAGTCCTAAAGTAGCAGTAGCACGCCAGACTTCTCGTAGACAACTAGCA
CCTCTCATAAATTTGCACGACTTTGAAAGCAAAGAATCACCAAACTCGCCAGTGGTAGCT
AACAGTTTAGAAGATCTGATAACTTTTGATGGAAGTTTAGACAACTCTGAGCTGACTACT
AATCAAGATGATGCGGTGAAGGGAAGTACCGATGTTTCTGGTGTAGATAGCATGATATTA
GCTAACATAAAAGTGTTTGCAGAACAAGGGAATGCTTCTACAGGCCCTGAAGTTTCTAAG
AGCATTTTGAGCTTAGGTAACCAAAAAAAGAAAGTAAATTAGTGAAGTCTAGTAGTAGTA
TTAATGTATTATTAACTTTTGCAAAGTGTTCTGAAAGTTGTCAAGTCTATCTGCTACAAT
GTTTATGTACATAGTATGGCAACTGGACAAGCAAATGACTCAGTTCCTTTTAAGTTACTA
TTTCTGTTGTGTCTCTTGTTTCAATAAAGTGATGCCTCGTATGAAAAAACTATTCCTCTT
TGTTTCCATTTGATCTTTCTTATCTTTAGTTTTTGTAAGCTACAAATATAGTCTATTCAA
C