Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005670.1.1
CDS Infomation

U-box domain-containing protein 18 (AHRD V3.3 *** W9RKZ7_9ROSA)
Sequence

ATGATCAACAAATCTAACGAATTTATTCGCCGGATTTTGAATTTTCCGGCTATTCGTCCA
AGTGAAACAGTGTGTTTGTCTAGCCTTGTTGCATCTTTGATTCAACTAGGCCAAACAATA
TGTGAATTCAAGTCAAGAACTTTTTATACAAATAAGAAGAATGTTAGAAATTCGATTCGT
TTAATTGAGGACATTCTCATTGTTCTTAAAGAAATCCCAAATGGGGCTTCAAGATTTGCT
AGTTCAAGCATTGTGAGCTTATCTGAGATTCATTTTATCTTCCAGAAGTTTCATTTCTTG
TTGAATGATTGTAGCAGAGAAGATTCAAGAATATGGATTTTAGCGAAATCTGAGGATGTT
TCTTGCCAGTTTAAGATGCTAGCAAGAGCTGTTGCTGTGGCACTTGATGTTCTTCCTTTA
GAGGAAATGGATGTTTCTGTGGAGGGTAGAGAAGTGGTTGAGTTTGTGAGGAATCAAGCT
GTTAAGTTGAAGTTTGAAGTCGAAATGGATGATGGGAGAATGCAATTGAATGTTTTGAAG
ATTTTGGATCTACTTGAAGATGGAATTGTTCCGGAATCATGTGATCTGAAAAGGGTTCTT
GATTATTTAGGAATTAAACGTTGGAGCGCGTGTAATAGAGAAGTTAAGTTCTTGGATAAT
GAGATGTTGTTGGAGGGGAATACTGAGGAGAAGAGAGATATGGGGATCCTTAGTAGCTTA
ATGGGGTTCATGATATACTGCAGGGGAACTCTGTTTGAAGTATTGGATAATGGAGCAAGT
AGACAAATCAATGGAGGCAGTACTAATGTAGATCAAGTTATCAGGTTCTTAAATCTTGAT
GATTTCAGGTGTCCAATTACACTTGAAATCATGAGTGATCCAGTGACAATAGCCTCAGGT
CACACGTATGATCGGTCTTCGATTCTGAAATGGTTCAGAGCTGGAAATTCAACTTGTCCA
AAGACTGGTGAGAGATTAACAAGTATTGATTTGGTTCCTAATTTGGCTTTGAAGGTTTTA
ATCAAACAGTATTTCTCCGCGAATGGTATTCCATTTGTGGAGACTGGTACGAGAAATCGT
GATGCTGTAAGATTTGTTGGTTCAAGTACTGTGGCTAATGAGCAGGCTATGAAGTTGCTT
GCAAGTTTTCTAGTAGGCAGGCTGGTTGCTGGAACAATGGAACAGCAAAATAAGGCTGCT
TTCGAGATTCGTTTGCTCACCAAAACAAGTATTTTTAACAGGTCTTGTTTGGTGGAAGCT
GGTGCAATCCCACCTCTTCTGAATCTTGTTACTTCAAGGGATTCCTCTTGTCAAGAGAAT
GTGATGGCTACTCTACTGAACCTCTCAAAGAACTCTAAATGCAAAAGTACAATTGTTGGA
AATGGAGGTTTGTTCTTAATACTTGATGTGTTGAAAGGAGGGCTAAAGATGGAGGCTCGA
CAGCACGCAGCTGGTACATTATTCTACCTTACATCAGTAGAAGAGTACCGTAAAATGATG
GGAGATAATCCGGAGTTCATTCCATCACTTCTGGAGTTGCTAAGAAATGGCACTGACAGA
GGAAAAAAGAATGCCTTGGTCACCATTTTTGGCCTCTTAATGCGCCCCGAAAACCACTGG
AGAGTGATTGCTGCTGGATTAGTCCCCTTGGTGGTTAATCTGTTGAAATCTTTCGAAAGG
GAAGATCTCATTACAGATTCCTTAGCAGTTTTATCAACGCTTTCTGAAAGGCTAGACGGA
GCAATGGCTGTTCTTTATGCTGGAGCTTTGCCTATTATCGTCAATGTTCTAAGTTCTTGC
AATTCAAGGGCATCAAAAGAGTACTGTGTCTCGTTGTTGCTGGCTTTGTGTATCAATGGT
GGAGCAGATGCAGTTCCTGTTTTAGTAAAGAACTCATCTCTCATGGGACCGTTATATTCC
CTCCTGGCTGAAGGCAACTCAAAAGCAAGCAAGAAAGCTAGTACACTCATCAGAATCTTG
CACGAGTACAACGAGAAGACCTCATCTGGCTTGATCACTCCAGTTTTTATAGAGGATCAA
TTCATTAATGTGTGGTAA

Peptide Sequence

PEP ID

Solyc05g005670.1.1
PEP Infomation

U-box domain-containing protein 18 (AHRD V3.3 *** W9RKZ7_9ROSA)
Sequence

MINKSNEFIRRILNFPAIRPSETVCLSSLVASLIQLGQTICEFKSRTFYTNKKNVRNSIR
LIEDILIVLKEIPNGASRFASSSIVSLSEIHFIFQKFHFLLNDCSREDSRIWILAKSEDV
SCQFKMLARAVAVALDVLPLEEMDVSVEGREVVEFVRNQAVKLKFEVEMDDGRMQLNVLK
ILDLLEDGIVPESCDLKRVLDYLGIKRWSACNREVKFLDNEMLLEGNTEEKRDMGILSSL
MGFMIYCRGTLFEVLDNGASRQINGGSTNVDQVIRFLNLDDFRCPITLEIMSDPVTIASG
HTYDRSSILKWFRAGNSTCPKTGERLTSIDLVPNLALKVLIKQYFSANGIPFVETGTRNR
DAVRFVGSSTVANEQAMKLLASFLVGRLVAGTMEQQNKAAFEIRLLTKTSIFNRSCLVEA
GAIPPLLNLVTSRDSSCQENVMATLLNLSKNSKCKSTIVGNGGLFLILDVLKGGLKMEAR
QHAAGTLFYLTSVEEYRKMMGDNPEFIPSLLELLRNGTDRGKKNALVTIFGLLMRPENHW
RVIAAGLVPLVVNLLKSFEREDLITDSLAVLSTLSERLDGAMAVLYAGALPIIVNVLSSC
NSRASKEYCVSLLLALCINGGADAVPVLVKNSSLMGPLYSLLAEGNSKASKKASTLIRIL
HEYNEKTSSGLITPVFIEDQFINVW*

Transcript Sequence

Transcript ID

Solyc05g005670.1.1
Transcript Infomation

U-box domain-containing protein 18 (AHRD V3.3 *** W9RKZ7_9ROSA)
Sequence

ATGATCAACAAATCTAACGAATTTATTCGCCGGATTTTGAATTTTCCGGCTATTCGTCCA
AGTGAAACAGTGTGTTTGTCTAGCCTTGTTGCATCTTTGATTCAACTAGGCCAAACAATA
TGTGAATTCAAGTCAAGAACTTTTTATACAAATAAGAAGAATGTTAGAAATTCGATTCGT
TTAATTGAGGACATTCTCATTGTTCTTAAAGAAATCCCAAATGGGGCTTCAAGATTTGCT
AGTTCAAGCATTGTGAGCTTATCTGAGATTCATTTTATCTTCCAGAAGTTTCATTTCTTG
TTGAATGATTGTAGCAGAGAAGATTCAAGAATATGGATTTTAGCGAAATCTGAGGATGTT
TCTTGCCAGTTTAAGATGCTAGCAAGAGCTGTTGCTGTGGCACTTGATGTTCTTCCTTTA
GAGGAAATGGATGTTTCTGTGGAGGGTAGAGAAGTGGTTGAGTTTGTGAGGAATCAAGCT
GTTAAGTTGAAGTTTGAAGTCGAAATGGATGATGGGAGAATGCAATTGAATGTTTTGAAG
ATTTTGGATCTACTTGAAGATGGAATTGTTCCGGAATCATGTGATCTGAAAAGGGTTCTT
GATTATTTAGGAATTAAACGTTGGAGCGCGTGTAATAGAGAAGTTAAGTTCTTGGATAAT
GAGATGTTGTTGGAGGGGAATACTGAGGAGAAGAGAGATATGGGGATCCTTAGTAGCTTA
ATGGGGTTCATGATATACTGCAGGGGAACTCTGTTTGAAGTATTGGATAATGGAGCAAGT
AGACAAATCAATGGAGGCAGTACTAATGTAGATCAAGTTATCAGGTTCTTAAATCTTGAT
GATTTCAGGTGTCCAATTACACTTGAAATCATGAGTGATCCAGTGACAATAGCCTCAGGT
CACACGTATGATCGGTCTTCGATTCTGAAATGGTTCAGAGCTGGAAATTCAACTTGTCCA
AAGACTGGTGAGAGATTAACAAGTATTGATTTGGTTCCTAATTTGGCTTTGAAGGTTTTA
ATCAAACAGTATTTCTCCGCGAATGGTATTCCATTTGTGGAGACTGGTACGAGAAATCGT
GATGCTGTAAGATTTGTTGGTTCAAGTACTGTGGCTAATGAGCAGGCTATGAAGTTGCTT
GCAAGTTTTCTAGTAGGCAGGCTGGTTGCTGGAACAATGGAACAGCAAAATAAGGCTGCT
TTCGAGATTCGTTTGCTCACCAAAACAAGTATTTTTAACAGGTCTTGTTTGGTGGAAGCT
GGTGCAATCCCACCTCTTCTGAATCTTGTTACTTCAAGGGATTCCTCTTGTCAAGAGAAT
GTGATGGCTACTCTACTGAACCTCTCAAAGAACTCTAAATGCAAAAGTACAATTGTTGGA
AATGGAGGTTTGTTCTTAATACTTGATGTGTTGAAAGGAGGGCTAAAGATGGAGGCTCGA
CAGCACGCAGCTGGTACATTATTCTACCTTACATCAGTAGAAGAGTACCGTAAAATGATG
GGAGATAATCCGGAGTTCATTCCATCACTTCTGGAGTTGCTAAGAAATGGCACTGACAGA
GGAAAAAAGAATGCCTTGGTCACCATTTTTGGCCTCTTAATGCGCCCCGAAAACCACTGG
AGAGTGATTGCTGCTGGATTAGTCCCCTTGGTGGTTAATCTGTTGAAATCTTTCGAAAGG
GAAGATCTCATTACAGATTCCTTAGCAGTTTTATCAACGCTTTCTGAAAGGCTAGACGGA
GCAATGGCTGTTCTTTATGCTGGAGCTTTGCCTATTATCGTCAATGTTCTAAGTTCTTGC
AATTCAAGGGCATCAAAAGAGTACTGTGTCTCGTTGTTGCTGGCTTTGTGTATCAATGGT
GGAGCAGATGCAGTTCCTGTTTTAGTAAAGAACTCATCTCTCATGGGACCGTTATATTCC
CTCCTGGCTGAAGGCAACTCAAAAGCAAGCAAGAAAGCTAGTACACTCATCAGAATCTTG
CACGAGTACAACGAGAAGACCTCATCTGGCTTGATCACTCCAGTTTTTATAGAGGATCAA
TTCATTAATGTGTGGTAA