Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005550.3.1
CDS Infomation

Polygalacturonase non-catalytic subunit AroGP2 (AHRD V3.3 *** GP2_SOLLC)
Sequence

ATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCA
TCTTTCAATATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAA
GGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTT
CTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTT
GCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATG
TGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACT
TACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACC
TTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCT
CCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTC
AATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAAT
ACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAA
GAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGC
AAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCA
GCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCT
TATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAAT
GGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTT
AGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCG
TTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATC
AATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACA
TTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGT
GGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTG
AAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTT
TTGCCCCGGGCGATTGCTGCGAAATTGCCTTTTTCTACGTCAAAGATTGATGAGCTGAAG
AAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGT
GAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGAT
ATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAAT
ACAAATGGATCAAAGGGGAACATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAA
GTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCAT
TCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAG
ATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGA
GCCTTCATTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAG
AATGACATGACTTGGGCAACTGCAGATTAA

Peptide Sequence

PEP ID

Solyc05g005550.3.1
PEP Infomation

Polygalacturonase non-catalytic subunit AroGP2 (AHRD V3.3 *** GP2_SOLLC)
Sequence

MHNKILVSSYILLVLLFSLSSFNIVVAKDGDESGNPFTPKGYVIRYWNKHVSNDLPKPWF
LLNKASPLNAAQYATYTKLVADQNALSTHLQSFCSSANLMCAPDLLPSLEKHTGDIHFTT
YGNKNFTNYGTNEPGIGVNTFKNYSEDASVNSFRRYGRGSPRDNKFDNYAPDGNVIDQSF
NSYSTNTPGGSGQFTNYAPNTNVPDLRFTAYSDQGTGGEQEFKTYLEQGNSGGQSFKSYG
KNGNGADSKFTSYGNETNVAASTFKNYGQNANGENQNFTSYSTNGNNPQNNFKNYGVGGN
GPSETFTNYRDESNVGDDKFSNYVKDANAGEANFTNYGQSFNEGTDVFITYGKGGNDPHI
NFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKML
KSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALS
ECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGK
VTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHG
AFIALGSGPGKIEVCHWIFENDMTWATAD*

Transcript Sequence

Transcript ID

Solyc05g005550.3.1
Transcript Infomation

Polygalacturonase non-catalytic subunit AroGP2 (AHRD V3.3 *** GP2_SOLLC)
Sequence

CCAAACGAAGCGATATAAATCAAAACGGAGGGAGTAATAATTATCGATCGATGGTTTTAA
AACTAGAACATAACTAACCCACCACTCCATCTTCTCTACCTTGTACTATAAATTGTGTGC
CTCCAACCAAACATCCACACCAACCTTTTACTATTCATCCCATCTCTCTCTATTTCACAC
AAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTC
ACTATCATCTTTCAATATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTAC
GCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCC
ATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAA
ACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAA
TCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTT
TACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGT
TAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAG
AGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCA
AAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGC
CCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGG
GGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAG
CTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAA
TGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTT
TACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGG
AGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGA
CAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGG
TCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCC
ACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATAC
AGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGT
TAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAA
GATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAG
GTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTGCCTTTTTCTACGTCAAAGATTGATGA
GCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGC
GCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGC
TGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAAC
TGAGAATACAAATGGATCAAAGGGGAACATCATGATTGGATCAATAAAAGGAATCAATGG
TGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTA
CTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAA
GGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAG
GCACGGAGCCTTCATTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGAT
CTTTGAGAATGACATGACTTGGGCAACTGCAGATTAA