Plant GARDEN How To ▶︎

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Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005540.3.1

CDS Infomation

Polygalacturonase non-catalytic subunit AroGP3 (AHRD V3.3 *** GP3_SOLLC)

Sequence

ATGCAGGTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGT
TATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTT
CTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCT
GATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGT
GCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTAC
GGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTC
AAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGAT
TCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAA
AGTTTCAACAGCTATAGCACAAATACTCCAGGGGGGTCTGGTCAATTCACCAATTACGCC
CCGGGGTCCAATGTCCCTGATTTGCATTTCACTTCCTATTCCGACCACGGAACAGGAGGG
GAACAGGACTTCAAATCCTACGGAAACGATGGAAATGCTGGTCAACAATCTTTCAAAAGC
TATGGAAAAGATGGGAATGGGGCGGATAGTCAATTCACTACTTATGGAAACAATACTAAT
GTTGATGGCTCAGACTTTACAAATTATGGTGAGGCAGCAAATGGGGAGAACCAAAATTTC
ACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGA
GGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGAC
ACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGT
CAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCA
CATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACT
GCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTT
AACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAG
ATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGG
TCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAG
CTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCG
CTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCT
GAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACT
GAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGT
GGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTAC
TGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAG
GCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGG
CACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATC
TTTGAGAATGACATGACTTGGGCAACTGCTGATTGA

Peptide Sequence

PEP ID

Solyc05g005540.3.1

PEP Infomation

Polygalacturonase non-catalytic subunit AroGP3 (AHRD V3.3 *** GP3_SOLLC)

Sequence

MQVVVAKDGDESGNPFTPKGYLIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVA
DQNAFTTHLQSFCSSANLMCALDLLPSLEKHKGDVHFVSYGDKNFTNYGTKESGLGFNSF
KNYTEEENFPVNSFRRYGRDSPHDNQFDNYGAPGGNTPVQSFNSYSTNTPGGSGQFTNYA
PGSNVPDLHFTSYSDHGTGGEQDFKSYGNDGNAGQQSFKSYGKDGNGADSQFTTYGNNTN
VDGSDFTNYGEAANGENQNFTSYGFNGNNPASSFNNYGVGGNGPSEAFNSYRDQSNVGDD
TFTTYVKDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDT
ATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKR
SFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSA
EDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYY
CHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWI
FENDMTWATAD*

Transcript Sequence

Transcript ID

Solyc05g005540.3.1

Transcript Infomation

Polygalacturonase non-catalytic subunit AroGP3 (AHRD V3.3 *** GP3_SOLLC)

Sequence

ATGCAGGTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGT
TATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTT
CTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCT
GATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGT
GCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTAC
GGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTC
AAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGAT
TCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAA
AGTTTCAACAGCTATAGCACAAATACTCCAGGGGGGTCTGGTCAATTCACCAATTACGCC
CCGGGGTCCAATGTCCCTGATTTGCATTTCACTTCCTATTCCGACCACGGAACAGGAGGG
GAACAGGACTTCAAATCCTACGGAAACGATGGAAATGCTGGTCAACAATCTTTCAAAAGC
TATGGAAAAGATGGGAATGGGGCGGATAGTCAATTCACTACTTATGGAAACAATACTAAT
GTTGATGGCTCAGACTTTACAAATTATGGTGAGGCAGCAAATGGGGAGAACCAAAATTTC
ACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGA
GGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGAC
ACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGT
CAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCA
CATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACT
GCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTT
AACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAG
ATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGG
TCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAG
CTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCG
CTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCT
GAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACT
GAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGT
GGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTAC
TGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAG
GCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGG
CACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATC
TTTGAGAATGACATGACTTGGGCAACTGCTGATTGA