Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005470.3.1
CDS Infomation

Nucleoredoxin 1
Sequence

ATGGCTATGGCGAATGATCTCACAGTTGTACTGTCTTCAAAGGAGAGAGACTTTCTAATA
AGTACAAACGGCGAACAGGTTACATTGAGCAGCATAACAGGAAAGATTGTGGGCTTGTAT
TTCTCTGGTTTATGGTGTGGTCCATGTCGCCAGTTTACACCAAAGTTGGTGGAAGCTTAT
GAGAGTCTGTATCCTAAAGGTGATTTTGAAATAGTGTTCATTTCATCTGATAAAGATGAC
GAATCGTTTAATGAATACTTTGAGAAAATGCTATGGCTTGCTGTTCCATTTTCTGATGTT
GAGGCTAGAAAGAACTTAAAGCAGTTGTTCAAAGTAAGGACAATTCCACATCTTGTGATT
CTTGACGGGACAGGCAAAGTTTTGAGCAGCGATGGCGTTAAATATATCAAGCACTTTGGT
CCTGAAGCCTATCCATTTACATCAGAAAGAATTAATTACTTGAGGCTGGAAGAAGAGAAG
GCTAAAGAAAATCAGTCTTTGAGATCTCTTCTGGTCTATGGATCACGCGATTTCTTAATC
TCGAATGAAGAGAACAAGATTTCCGTGTCTGAGCTTGAAGGGAAAACAGTTTGCCTATAT
TTCGGAACTAGTACTCATAGAGGGGGCAAGAATTTCACCTTGAAGCTAGCAGAGGTATAC
GAAAAGCATAAAGGAAACAACTTTGAAATTGTGCTGATTTCTCTGGATGAAAAATATGAG
GATTTTAAAGAAAGCTTTGAAGCAATGCCATGGTTGGCTTTACCTTTCAAAGACAAGAAC
TGTGAGAGACTTGTTCAGTACTTTGAGCATAAACTCCTACCACAGCTTGTCGTATTAAGT
CCAGATGGGAAGACTCTGCAGCAAAATGCAGTTAAATTTGTCGAAGAATATGGTGACGAA
GCATTTCCTTTCACACAAGAAAAGCTTGCTACTTTGGCTAATTTAAAAAAGAAAAAACTA
GAAGCACAAACATTAGAGTCCATTCTTGTTACTGCAGATCGAGATTTTGTCATTTCAAAT
GGCGGTTTAAAGGTTCCTGTACACAAACTAGTAGGGAACAACATTGTACTGTATTTTGCA
GCAAGTTGGAGTCTCCCAAGTCGAGAATTTCAACCCAAACTCGAAACTGCATACCAAGAA
ATCAAGAAGAAAGATGAAAATTTTGAAGTGATTTTCATCTCTAGTGATCAAGATGAGTCT
TCCTTTACTAACTTCTTTTCAAGTATGCCCTGGTTGGCACTTCCTTTCGACGATGAAAGG
AGATCATTTCTGTCGCGCAGATTCAACATTGTAGGCATTCCAGTGGCCATAGCAATTAGT
CCTAGTGGCTTCACTGTGAATACACAAGTAAGGCAGCTATTAGAGACGCACGGCTCAGGA
GCCTATCCCTTCACAGAAGAACATATAAAGAATTTGCAGCAACAACTCGACAAAAATACA
ACAGGTTGGCCCAAGAAAGACAGAAATGAAAGTCACAATGAGCATGAACTTGCATTGATA
CATCAGCAAGTGTATCTCTGCAGTGGGTGCAAGGAGATGGGGTACGGGTGGGCTTTCTTC
TGCAAACGTTGTGATTATGGGCTCCATCCAAAATGTGCTCCAAAACAGGAAGAAATGAAC
TGA

Peptide Sequence

PEP ID

Solyc05g005470.3.1
PEP Infomation

Nucleoredoxin 1
Sequence

MAMANDLTVVLSSKERDFLISTNGEQVTLSSITGKIVGLYFSGLWCGPCRQFTPKLVEAY
ESLYPKGDFEIVFISSDKDDESFNEYFEKMLWLAVPFSDVEARKNLKQLFKVRTIPHLVI
LDGTGKVLSSDGVKYIKHFGPEAYPFTSERINYLRLEEEKAKENQSLRSLLVYGSRDFLI
SNEENKISVSELEGKTVCLYFGTSTHRGGKNFTLKLAEVYEKHKGNNFEIVLISLDEKYE
DFKESFEAMPWLALPFKDKNCERLVQYFEHKLLPQLVVLSPDGKTLQQNAVKFVEEYGDE
AFPFTQEKLATLANLKKKKLEAQTLESILVTADRDFVISNGGLKVPVHKLVGNNIVLYFA
ASWSLPSREFQPKLETAYQEIKKKDENFEVIFISSDQDESSFTNFFSSMPWLALPFDDER
RSFLSRRFNIVGIPVAIAISPSGFTVNTQVRQLLETHGSGAYPFTEEHIKNLQQQLDKNT
TGWPKKDRNESHNEHELALIHQQVYLCSGCKEMGYGWAFFCKRCDYGLHPKCAPKQEEMN
*

Transcript Sequence

Transcript ID

Solyc05g005470.3.1
Transcript Infomation

Nucleoredoxin 1
Sequence

CGATTGGCATGAAAATGACGTTCACTTACCTGAACTGGAAAAGCTTATAAGAATTTGCAT
CAATTAGTTCTTTTAAAGTTTAACAGGTTACTTTTCTCCTTCAGATGATAAGATAATCTG
TACATGAAAATATTACTATATGATTAATTGATGAAAAAATCATTTGTATCAGTAACACAC
TCATAAAAGATAACAGAAACAAAGAGAAATTTAATAATGTTATTTGGAGAAGCCGGCAGG
CCAAAGACAAAGCAGCATATATGAGGAATCTTGGTCAGTGGAGGAATCAAGATGCCACTG
TCCATTCTAATAAATAATAATATTCCATTTCATTTGTCACTATTGTATAGTCTATTTTGA
TTATATAATATTGTAACAAAATGCCCTTCAAAGTTTAGTCTAGGCAGATAATACTTCTAA
TCCAATTTAATATGTATTTGTGACAGGGCCGGCCAGGTTGAACCTTCAGATGAAATTGAC
TGGCAAGTGCTCGTTGTCCCTGATAAGTTTCCTTTAAGAGAGAATAAAAACAGAACATGT
CAAATGGACATGTTGAGTATTGTACAGTTTTGAGAGAGAGATAGGAATCAGTAACTTATG
GCTATGGCGAATGATCTCACAGTTGTACTGTCTTCAAAGGAGAGAGACTTTCTAATAAGT
ACAAACGGCGAACAGGTTACATTGAGCAGCATAACAGGAAAGATTGTGGGCTTGTATTTC
TCTGGTTTATGGTGTGGTCCATGTCGCCAGTTTACACCAAAGTTGGTGGAAGCTTATGAG
AGTCTGTATCCTAAAGGTGATTTTGAAATAGTGTTCATTTCATCTGATAAAGATGACGAA
TCGTTTAATGAATACTTTGAGAAAATGCTATGGCTTGCTGTTCCATTTTCTGATGTTGAG
GCTAGAAAGAACTTAAAGCAGTTGTTCAAAGTAAGGACAATTCCACATCTTGTGATTCTT
GACGGGACAGGCAAAGTTTTGAGCAGCGATGGCGTTAAATATATCAAGCACTTTGGTCCT
GAAGCCTATCCATTTACATCAGAAAGAATTAATTACTTGAGGCTGGAAGAAGAGAAGGCT
AAAGAAAATCAGTCTTTGAGATCTCTTCTGGTCTATGGATCACGCGATTTCTTAATCTCG
AATGAAGAGAACAAGATTTCCGTGTCTGAGCTTGAAGGGAAAACAGTTTGCCTATATTTC
GGAACTAGTACTCATAGAGGGGGCAAGAATTTCACCTTGAAGCTAGCAGAGGTATACGAA
AAGCATAAAGGAAACAACTTTGAAATTGTGCTGATTTCTCTGGATGAAAAATATGAGGAT
TTTAAAGAAAGCTTTGAAGCAATGCCATGGTTGGCTTTACCTTTCAAAGACAAGAACTGT
GAGAGACTTGTTCAGTACTTTGAGCATAAACTCCTACCACAGCTTGTCGTATTAAGTCCA
GATGGGAAGACTCTGCAGCAAAATGCAGTTAAATTTGTCGAAGAATATGGTGACGAAGCA
TTTCCTTTCACACAAGAAAAGCTTGCTACTTTGGCTAATTTAAAAAAGAAAAAACTAGAA
GCACAAACATTAGAGTCCATTCTTGTTACTGCAGATCGAGATTTTGTCATTTCAAATGGC
GGTTTAAAGGTTCCTGTACACAAACTAGTAGGGAACAACATTGTACTGTATTTTGCAGCA
AGTTGGAGTCTCCCAAGTCGAGAATTTCAACCCAAACTCGAAACTGCATACCAAGAAATC
AAGAAGAAAGATGAAAATTTTGAAGTGATTTTCATCTCTAGTGATCAAGATGAGTCTTCC
TTTACTAACTTCTTTTCAAGTATGCCCTGGTTGGCACTTCCTTTCGACGATGAAAGGAGA
TCATTTCTGTCGCGCAGATTCAACATTGTAGGCATTCCAGTGGCCATAGCAATTAGTCCT
AGTGGCTTCACTGTGAATACACAAGTAAGGCAGCTATTAGAGACGCACGGCTCAGGAGCC
TATCCCTTCACAGAAGAACATATAAAGAATTTGCAGCAACAACTCGACAAAAATACAACA
GGTTGGCCCAAGAAAGACAGAAATGAAAGTCACAATGAGCATGAACTTGCATTGATACAT
CAGCAAGTGTATCTCTGCAGTGGGTGCAAGGAGATGGGGTACGGGTGGGCTTTCTTCTGC
AAACGTTGTGATTATGGGCTCCATCCAAAATGTGCTCCAAAACAGGAAGAAATGAACTGA
AAGCAAATGTTTGATGAAAAACCAAGCTCCTTTTAGTAACATGATAGATCCACTTTAACC
TCATACATGACCTCTAGTTAATCTTGTGATTAAAATAGTGATTTGTGTGTAATTTGTATC
ATTCTTATGTCTGACCTTCAAATAAAAAGTTGTTAGATCATCTTCATTATGCAACTATGT
ATGGTAGGAGTGGCTCTTCGGGCCGATCACAAATTTTTGGCCATGTACAGAAG