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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g005040.3.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G26610.1)
Sequence

ATGGTTCTTCAGAGTATAATAAGGGGGGTGTCTATATATAGTGTCAATAACCACCTCAAT
TTCATCACTTGCAAATTTCAATATATGTTTCAAATGAAGAAGAATTATAGGCACACTTGC
TTTATATTTCTTCTACTTATTTTTGCCACCACAATATCAGTTGATGCAAGGAAACACTAC
CATACCAAAAAGAGCAAAATACACCACAAACATAAGAAAAATAATGGAGGTGCACCAAAT
TGTTCAAGCTCTCCATTTCCATCTCATGGTTTTTACCCAACAAATGGATCTCCCATTTTT
AATATCTTGTCCTTTGGAGCCAAAGGTGATGGAGTTTCTGATGATACCAAGGCACTTGAA
ACAGCATGGGAAGCAGCTTGCAAAGTCCAAGGGGCTACTCTAGAGATTCCTTCAGAATTT
CAATTCTTAATCAATCCCATTACACTTCAAGGACCATGCATGCCAAACTTTGTTTTTCAG
ATAGACGGAATTATTTTGGGTCCTCCAAAAGTAGGATCCTGGCCTAAATCCAGCTTGTTT
CAGTGGTTGAATTTGAAGTGGATGCACAACTTTACCATCCAAGGTACTGGCACCCTTGAT
GGCCAAGGCTATAACTGGTGGAAACTTTCTCAAATTGACTTTTTTCAGGTGATGAAGAAA
TCTAAAAACATTCCTGATATGAAACCAACTGTTTTACGATTTTATGGTAGCTATAATGTG
ACAATACGTGATGTCAAAATTATAAACAGTCCTCAATGTCACCTTAAATTTGACAATTCT
AAAGGGGTGAAAATCAACAATGTTACAATTTCTGCCCCAGAAAGTAGCCCAAACACGGAT
GGAATTCACCTCCAAAACACACAAGATGTTGAGATCCATCACTCAAATATTGGAACAGGA
GATGACTGCATATCAATTCAAACTGGTTGCTCCAATATACATGTCCATCACATGAATTGT
GGTCCTGGACATGGCATAAGCCTAGGAGGACTAGGAAAAGATAAAAGTATTGCGTGCGTT
TCAGACATCATTGTTGACAATGTGAACTTGCAAAGCACTATGTATGGTGCAAGGATTAAG
ACATGGCAGGGTGGTGTTGGATCAGTTAAGAACATATCATTTACAAACATTCAAGTATCA
AATGTTAAGGTACCAATCATGATAGACCAATATTATTGTGACAAACATGTGTGCAAGAAT
CAAACAGGAGCAGTAGCAATATCCAACGTACAATTCAATCAAATCATTGGAACTTATTCA
ACCAAACCAATTCATCTAGCTTGCAGTAATTCAATTCCATGTACAGACGTTGATTTAATT
GATATTCAATTAAAACCATCGACGAATTATCGAGGAATTAATCAACTTGCTGGATTGTGT
TGGAATTCTTACGGAAAATCACAAGCACCACTTCTTCCTTCGAGTATGGATTATTGTGTT
AGAAGGGGAAGTGGATTTGTTAGAGGAATTTCAAGATCTCATGAACATGTTTGTTTGTGA

Peptide Sequence

PEP ID

Solyc05g005040.3.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G26610.1)
Sequence

MVLQSIIRGVSIYSVNNHLNFITCKFQYMFQMKKNYRHTCFIFLLLIFATTISVDARKHY
HTKKSKIHHKHKKNNGGAPNCSSSPFPSHGFYPTNGSPIFNILSFGAKGDGVSDDTKALE
TAWEAACKVQGATLEIPSEFQFLINPITLQGPCMPNFVFQIDGIILGPPKVGSWPKSSLF
QWLNLKWMHNFTIQGTGTLDGQGYNWWKLSQIDFFQVMKKSKNIPDMKPTVLRFYGSYNV
TIRDVKIINSPQCHLKFDNSKGVKINNVTISAPESSPNTDGIHLQNTQDVEIHHSNIGTG
DDCISIQTGCSNIHVHHMNCGPGHGISLGGLGKDKSIACVSDIIVDNVNLQSTMYGARIK
TWQGGVGSVKNISFTNIQVSNVKVPIMIDQYYCDKHVCKNQTGAVAISNVQFNQIIGTYS
TKPIHLACSNSIPCTDVDLIDIQLKPSTNYRGINQLAGLCWNSYGKSQAPLLPSSMDYCV
RRGSGFVRGISRSHEHVCL*

Transcript Sequence

Transcript ID

Solyc05g005040.3.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G26610.1)
Sequence

GGTACCATGGAACCCCTCTAAGCAAGTGAATATGGTCGGTGCGTAGTGAAATGATGAATA
AAGAAGTTTTGTGAAAAAGTGAACCTTTAGACTGTATTGTTTATGTTTTGTTAAGAGCCA
CAAACTTTACACAATAGTGACATCTATTTAATAATCCATATTATGTACTTGGAATGGTTC
TTCAGAGTATAATAAGGGGGGTGTCTATATATAGTGTCAATAACCACCTCAATTTCATCA
CTTGCAAATTTCAATATATGTTTCAAATGAAGAAGAATTATAGGCACACTTGCTTTATAT
TTCTTCTACTTATTTTTGCCACCACAATATCAGTTGATGCAAGGAAACACTACCATACCA
AAAAGAGCAAAATACACCACAAACATAAGAAAAATAATGGAGGTGCACCAAATTGTTCAA
GCTCTCCATTTCCATCTCATGGTTTTTACCCAACAAATGGATCTCCCATTTTTAATATCT
TGTCCTTTGGAGCCAAAGGTGATGGAGTTTCTGATGATACCAAGGCACTTGAAACAGCAT
GGGAAGCAGCTTGCAAAGTCCAAGGGGCTACTCTAGAGATTCCTTCAGAATTTCAATTCT
TAATCAATCCCATTACACTTCAAGGACCATGCATGCCAAACTTTGTTTTTCAGATAGACG
GAATTATTTTGGGTCCTCCAAAAGTAGGATCCTGGCCTAAATCCAGCTTGTTTCAGTGGT
TGAATTTGAAGTGGATGCACAACTTTACCATCCAAGGTACTGGCACCCTTGATGGCCAAG
GCTATAACTGGTGGAAACTTTCTCAAATTGACTTTTTTCAGGTGATGAAGAAATCTAAAA
ACATTCCTGATATGAAACCAACTGTTTTACGATTTTATGGTAGCTATAATGTGACAATAC
GTGATGTCAAAATTATAAACAGTCCTCAATGTCACCTTAAATTTGACAATTCTAAAGGGG
TGAAAATCAACAATGTTACAATTTCTGCCCCAGAAAGTAGCCCAAACACGGATGGAATTC
ACCTCCAAAACACACAAGATGTTGAGATCCATCACTCAAATATTGGAACAGGAGATGACT
GCATATCAATTCAAACTGGTTGCTCCAATATACATGTCCATCACATGAATTGTGGTCCTG
GACATGGCATAAGCCTAGGAGGACTAGGAAAAGATAAAAGTATTGCGTGCGTTTCAGACA
TCATTGTTGACAATGTGAACTTGCAAAGCACTATGTATGGTGCAAGGATTAAGACATGGC
AGGGTGGTGTTGGATCAGTTAAGAACATATCATTTACAAACATTCAAGTATCAAATGTTA
AGGTACCAATCATGATAGACCAATATTATTGTGACAAACATGTGTGCAAGAATCAAACAG
GAGCAGTAGCAATATCCAACGTACAATTCAATCAAATCATTGGAACTTATTCAACCAAAC
CAATTCATCTAGCTTGCAGTAATTCAATTCCATGTACAGACGTTGATTTAATTGATATTC
AATTAAAACCATCGACGAATTATCGAGGAATTAATCAACTTGCTGGATTGTGTTGGAATT
CTTACGGAAAATCACAAGCACCACTTCTTCCTTCGAGTATGGATTATTGTGTTAGAAGGG
GAAGTGGATTTGTTAGAGGAATTTCAAGATCTCATGAACATGTTTGTTTGTGAATTTCTT
TTTATATATAATTTCTAGGTACTATTGTAATTAATTTGTTTTTAAATTTTCTATGGTTCG
TTTCGTCCTTCCCCTTATGTTTTTAATGGTGGAAGACACAAGTTTCTAGCTAGTTTAGAA
CTAAATATGAAGTTTTCTTTCCTTCTTTTTTAGATGAATTTTATATTCACCATTCTCCTT
GTTTTTGGCTCTCATTAATTTCTTTTTTTTTCTTTTATAATTATCTGGCTTTTTACCTTG
TTTTGTTTCACCCTTTAGAACATCCATCTCATTTTCTTTTACTTTTCACCTAACATTTGT
GACTTCAAATCTAAACTTAATAAAAAGGACAAAAGAGTC