Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g082790.3.1
CDS Infomation

RNA helicase DEAD16
Sequence

ATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCA
AACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAG
TCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGAT
GAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTT
ACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCT
GAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAA
ATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAAC
GGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTT
GCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGAATATGGAA
GTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGAT
TCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGC
ACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAA
ATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGAGCGGTTTTCAGGATGATTCC
ATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTGCTTCTCTTTTCT
GCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTG
CAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAG
TATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTT
GAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGT
ATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTT
AGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTT
ATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTTAATTTGGTGGTTAAT
TATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCAT
CGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTGCGATATTCAACTTGCTGTGCAGT
GACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG
ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAA

Peptide Sequence

PEP ID

Solyc04g082790.3.1
PEP Infomation

RNA helicase DEAD16
Sequence

MADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVD
ESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQE
ISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNME
VLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTGRKLGMSCMK
ILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVTKIVQDLFV
QDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIFVRTRNSAS
MLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQSQVNLVVN
YDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAE
ISWNSEEDFENALKIAGLL*

Transcript Sequence

Transcript ID

Solyc04g082790.3.1
Transcript Infomation

RNA helicase DEAD16
Sequence

TAAAAAACTCAGTGGTAAATAATTTCTCAAAATAAACTCTTACCAGGATTAAAACTAGCG
TCAGGCTGAAGCAACGCTGCCACATATATATAATATTTACATCTCCTCTACTGACATTTT
ACTTTTTGCTGCCTTAACTCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAG
CATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGA
CGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAA
TATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGA
AGATTCCAGCATAGAAGCGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATT
TGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGA
GCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAA
TCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTT
GAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGA
ATTGGCTATTCAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATC
AGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGT
TACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAA
ACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGA
GAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAA
CTGCCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAA
AATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACT
TTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTAT
GGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGT
TCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGT
GACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAA
AGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATC
ACAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCC
AGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTGC
GATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCA
TTTCAACCATCAAGTGGCTGAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCT
GAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAG
TAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGG
CTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAA
AACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGA
AAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGA
GCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGA
AATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTC
TACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTC
CTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGAATCTAGTTGCTCTAAATTTGTAG
TCACGAATTGTGATACTATTATTGGTTCTAAGTTCGTTCTTATTATATGTTGACAGTTTG
CTTACTGTTCCTAAAGGTTTGTTATTTTATGATTTTTTTCTTTCAATCTT