Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g082330.3.1
CDS Infomation	pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1)
Sequence	ATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCA TCTCGCAATGTTCATAAAGTTTCTTCAAAAGATAAGAGTAGAATTGCGAAACCTGATCGC AATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATGATGAGGGAGCAG AAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGA GTTATTGTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTC CTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAA TATAAGTTGAGAGCAACGGTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAG ATGGCCAAGGTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAA GATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTT CCTAGTACAGCAGTACTGATTCGTGATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCA AAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCA GCAGATACAAAGGATGATTTGCACAAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCA GTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTCGACGTGGTAGCT GATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGC CTGTCGGTGAATCAGCTGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATC GAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCT GATGACATGAATGAGGCACAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAG CCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGACATGGCCTACTGAG GCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTT CCTAAGGGCACTTCTGAATATCAGGCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTT TCTGAGAGCGAGAATGAAGAAGAAGATGGTATGGTGCTAGATGAAGGGGAAAATGCCTTA AATAGCCAAGTACGTATGGATGAGTTTGAACTCGATGATGACCAGGCGTCTCTAGCACTC GTATCAGATGAAGAAACTGAGACTCATTCCATGATGATGGATGGTGAGAACCTGACTAGG GAGCAAATGGAAGAAGAGATAAGAAAAATTAAAGAAGCACATGCTGAGGATGAAGAATTC CCTGATGAAGTGGATACTCCATTGGATGTCCCTGCTAGGAAGCGTTTCGCCAAGTACAGA GGGCTCAAATCTTTCAGAACTTCCTCCTGGGACCCAAAAGAATCTCTACCTCAAGAGTAT GCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCC CGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCAT ATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCT GTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAGCTTA AAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTT GGGTTTCGCCAGTTTGTTGCAAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAG CAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCT ATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCC ACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAA ATTATTTTAACCGGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATG TTTCATAACCCAGAGGATGTCAGATGGTTCAAGCCTGTTGAAGTTTGGTCAAAGTGTGGT CGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGGGCAATGAAGTGCATCTTGAAT GGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGG TGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAA

Peptide Sequence

PEP ID	Solyc04g082330.3.1
PEP Infomation	pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1)
Sequence	MGGARAQVNKAHKTRFASKSSRNVHKVSSKDKSRIAKPDRNLTKGARAARLQRNKMMREQ KRDALLKEKRASSGSNSPPRVIVLFGLSRSVDLSALEQDLLKLLSADGTVVVYPAVASSE YKLRATVLKAPHGDLLACMEMAKVADLIAFVTSASSSNEEDCYIDAFGSHCLSIFRALGL PSTAVLIRDLPSELKKKNDSKKVCTSSLSSEFPEDCKFYPADTKDDLHKFLWLFKEQRFS VPHWRNQRPYLMAQKVDVVADNSISGKCTLLLSGYIRARSLSVNQLVHITGAGDFQLSKI ELLKDPCSLNVRKGGDLMESDDMNEAQVISCLTPDPMKQEPLLVENVPDPLAGEQTWPTE AEMAEAERNQEERKLKRKTLPKGTSEYQAAWIVEDSDADVSESENEEEDGMVLDEGENAL NSQVRMDEFELDDDQASLALVSDEETETHSMMMDGENLTREQMEEEIRKIKEAHAEDEEF PDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQEYARIFAFDNFNRTQKHVLSRA REMEQNVDECIPAGSYARLHIREVPNGVANKLNLVTKTMPVILCGLMQHESKISVLHFSL KKHDSYTDPIKSKEEMIFNLGFRQFVARPIFSSDSFNADKQKMERFLHPGRFSVASVYAP ISFPPLPLIALKIKDDATPATVAAIGSLRSIDPDRIILKKIILTGYPQRVSKQKATVRYM FHNPEDVRWFKPVEVWSKCGRRGRIKEPVGTHGAMKCILNGVLQQHDTLCMSLFKRTYPR WPEKWFPMTDA*

Transcript Sequence

Transcript ID	Solyc04g082330.3.1
Transcript Infomation	pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1)
Sequence	AAAAAATAAAAATCCTTAAACCCTATTGTACTGATTGCTGGCTTTTTAGCTGATGGGCTG CTAGGGTTTATTGTTAGAAGAAAAATTGATTGCTGTTTACTCAATCGTAGAGAAGATGGG AGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCG CAATGTTCATAAAGTTTCTTCAAAAGATAAGAGTAGAATTGCGAAACCTGATCGCAATCT CACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATGATGAGGGAGCAGAAAAG AGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTAT TGTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAA GCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAA GTTGAGAGCAACGGTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGC CAAGGTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTG TTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAG TACAGCAGTACTGATTCGTGATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAA GGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGA TACAAAGGATGATTTGCACAAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACC ACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTCGACGTGGTAGCTGATAA TTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTC GGTGAATCAGCTGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACT TCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGA CATGAATGAGGCACAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTT ACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGACATGGCCTACTGAGGCAGA AATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAA GGGCACTTCTGAATATCAGGCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGA GAGCGAGAATGAAGAAGAAGATGGTATGGTGCTAGATGAAGGGGAAAATGCCTTAAATAG CCAAGTACGTATGGATGAGTTTGAACTCGATGATGACCAGGCGTCTCTAGCACTCGTATC AGATGAAGAAACTGAGACTCATTCCATGATGATGGATGGTGAGAACCTGACTAGGGAGCA AATGGAAGAAGAGATAAGAAAAATTAAAGAAGCACATGCTGAGGATGAAGAATTCCCTGA TGAAGTGGATACTCCATTGGATGTCCCTGCTAGGAAGCGTTTCGCCAAGTACAGAGGGCT CAAATCTTTCAGAACTTCCTCCTGGGACCCAAAAGAATCTCTACCTCAAGAGTATGCTAG AATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGA GATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCG GGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGAT CCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAGCTTAAAAAA GCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTT TCGCCAGTTTGTTGCAAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAA AATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTC ATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGT TGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTAT TTTAACCGGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCA TAACCCAGAGGATGTCAGATGGTTCAAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCG TGGTCGCATCAAGGAACCTGTTGGTACACATGGGGCAATGAAGTGCATCTTGAATGGAGT CCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCC GGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTA TGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCT CTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTAC TTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGC TCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACA ATGATTTTTTTTTTTTGAATCGTTAACAAATTTTATAGCATGTTTGATTATGCTGTTTTA CTGTATTTTCTCTATAGTTCATTCTTAGACACTGAGAAAAAGTATGTGTGGTGATAATAT TCTAATTAGTTAAATTTATGGTGAGTAATTAGCTTTTT