Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g082130.3.1
CDS Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G20410.1)
Sequence

ATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAA
GCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTG
AGCGCCGTCAAAGATTTATGGTCCATTGGGGCATGTGTTCGATGCATTTTCCGACTATTT
GGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATT
TTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGA
TCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGAT
GATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAA
CTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCG
GTTGTAACAGAAAATGATCAAGCAGTTTGGTTGTATATGAAGAATAAGTACCGCCATGAA
CTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTA
TTAGTGATAAATCCATTACAAAGATTGTTGGGTGTAAAATCTACTCAAAGTTCTTTTCGC
GTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAAT
GGAGGAAATAAGAGGAGGAAAACAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCT
GTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAA
GTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG
GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGG
AGATATCTTAAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGA
ATGGGAGAAGCATCCGTTGAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGT
GACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTTCGGATGCTCGGTACA
GGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATA
AAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTCCGGGTTAAAAATCTT
AGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGAAG
CAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATA
TCATCACTAAAGGAATTGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGA
AGTCCATTGGAGAGAGAGAAAATTATACATTGGATGCAAGTGGAGAGGGTATCTGGAAGC
TCACAATATCTTCTACTGCATCTGTGTACCCAGGCTGGGACATATATCAAGGAATTTGTT
CACGGGGATTTTGGTCGCACTCAACCTAGTATCGGTTCAATTCTTGGTTGCAGAACAGAG
ATACTGCAACTCGATGTTACGGATGTGAAAATGGATTGCTTTCAGGAAGAATGA

Peptide Sequence

PEP ID

Solyc04g082130.3.1
PEP Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G20410.1)
Sequence

MAGEVAAAEVIGVKHLSSAEAAAEEEKLRLLREAVHALPVSAVKDLWSIGACVRCIFRLF
GLHELMCSHPSLSISKWCDILEDVMRNKDGEFNEQSHQERSRETNFCKICLGILQFLYYD
DTGTLLKKYSADDFAVVISELVKQQYQQIDSFSLEVSLPSVVTENDQAVWLYMKNKYRHE
LWFQEKAECQFISTKDIFKLLVINPLQRLLGVKSTQSSFRVRLTYSHSDALTRDDVQEGN
GGNKRRKTGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDK
VGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQG
DNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQYVRVKNL
RAVGSQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQTISSLKELKVAQKTPIRVLHRR
SPLEREKIIHWMQVERVSGSSQYLLLHLCTQAGTYIKEFVHGDFGRTQPSIGSILGCRTE
ILQLDVTDVKMDCFQEE*

Transcript Sequence

Transcript ID

Solyc04g082130.3.1
Transcript Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G20410.1)
Sequence

TAACAGGAAGTAATTATTATTTTTTAAAAAAGGGAGAAAGTGCAATTCATTTTAGTTCAA
AGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTT
ATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTT
CTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG
GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCT
TCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGA
GAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGC
TTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGT
GCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGAT
AGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGG
TTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAA
TTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG
GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCA
TTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGTTTC
ACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGT
AATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGT
TGTAATAACTTAATGGCTAAGTTAGATAAGGTCGGTAAGCCTTGTTCTCTGGCCATTCAT
TGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGTATTCGAGAAATGTGAGC
CAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGAAATAATA
GGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGG
GAGGACATTGATGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAAT
GCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTA
GAAAGTCAATACGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTC
ATGCGTGAAGGAGAGGCAGAGAAGCAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGT
CCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGAAAGTTGCTCAA
AAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACAT
TGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCTTCTACTGCATCTGTGTACC
CAGGCTGGGACATATATCAAGGAATTTGTTCACGGGGATTTTGGTCGCACTCAACCTAGT
ATCGGTTCAATTCTTGGTTGCAGAACAGAGATACTGCAACTCGATGTTACGGATGTGAAA
ATGGATTGCTTTCAGGAAGAATGAAAGAACTATAATATTCTTGGACCCAGGAATTTGCAT
TTGAACATTAGTTTTACATCCCTATTTTGGTGTAACATTTTGTATGCATCATAAGATCAA
ATTTTCTACTATTTAATATGTATTATGAAACATCTGCAAAATCAGTTGATCATAATACTT
AATTTTGATGCTATGACATTTTTATGGC