Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g082040.3.1
CDS Infomation

Mechanosensitive ion channel family protein (AHRD V3.3 *** AT2G17010.1)
Sequence

ATGGAAAAGTTGAGGTCTTTCAAATCTCTGTCTCCAGTTCATCATCTTCATCGTGCTAAC
TCTCCTTCACATCCAATAGAAGAACGTCAAAATTTATTGAAAGAAACCTCAATACCCAGT
GTTTCTACTTTGGGTTCTCAAGCTATGGATGGAACTGAGGGTAAAGAAGTAGTTGTCAAA
CCGAATATCAGAGAAACCTCCAAAACCCATAAAGAAACAGAGCTCTCCTCTTCTTCATCT
TCTTCGAAAACCCAGTTGAGTAACAATGCCAGTACCGATGAGAGTACACTGAATAAGATA
TATAGAGATTGCAGTTACGATTTCTCTAACGATGCAGCAATGAAACGCATGAGGGATAAC
AGCAAAGATTTCGATTTTGTAACGGAATCGCCATTTTCACAGCCGTCTCCGTTATCTAGG
GTGGAAGAAAGCCCCAACCACGGCGTCCTTACACCGAGGGAAGTTCGGGTTTCTTTCAAT
GAGAAACTTGCCGGTAACGGATCGATTCGCCGGCGGTCCAATTTGAGTACTGGACCGGGT
TTACAAGATGAGGTTGTGCTCAGTACCAGCTCTTCGTTTAGGAGAAAATCGAATCTTTTA
GCTGCTACTAGAACAAAATCGAGGTTAATGGACCCACCTGAGCAAGATCAAAGGTCACAG
AAGATTACTATGAAATCTGGGATTTTGGGGAGAAGTACTGAATTTGAAGATGATGACCCT
TTTTCAGATGAGGATTTACCAGAAGAGTATAAGAAAATGAAGTTTAATTTATTCTCTGTT
CTTCAGATGGTGAGTTTGATTTTGATAATTGCAGCTTTTGTTTGTAGTCTTACTATTAGA
AAATTCAAGGGGAGGAGTATATTTGGGCTTGCATTGTGGAAATGGGAGTTAATGGTTTTA
GTGTTGATTTGTGGGAGATTAGTTTCCGGATGGGGGATTAGATTGGCTGTGTTCTTTATT
GAGAGGAATTTCGTGTTGCGTAAAAGAGTGTTGTATTTTGTCTATGGTTTGAGGAACTCA
GTGCAGAATTGCATTTGGTTGAGTCTTGTTTTGATTGCTTGGCAATGTATTTTTGATAAG
AAAGTTGAGAGTATTACGAATACGAAGGTATTAAGGTATGTGTCTCGGATTTGGGTGTGT
CTTTTGTTGGGAACATTCATTTGGTTGCTGAAGACACTGTTGGTGAAGGTTTTGGCTACA
TCATTTCATGTTACTGCATTCTTTGATCGGATTCAAGAAGCCTTGTTTACACAGTATGTG
ATTGAGACGTTGTCTGGACCGCCGTTGGTTGAGATTAAGATGGAGTTAGAGGAGGAGGAG
AGGGTAATTGCTGAAGTCCAGAAGCTTCAGAGTGCTGGGGCTACATTGCCCCCTGATCTC
AAGGCCAGTATATTTCCAAAGAGACCGATTGGGACTCCACGGAAGTCCACTGCTGCTGCT
ACTCCTAGGAGTCCTGTATTTTCGAGAGCTGCTTCAAGAAAGGAAAAAGAAGAACAGGGA
GGCATAACTATAGATCATCTACATAGACTGAATCAGAAGAACATTTCAGCTTGGAATATG
AAAAGGTTGATAAATATTGTTCGTAAAGGTGTGCTGTCAACTTTGGATGAGAAACTTGAA
CAGTCAAATGGCGATGATGAAGCTGCAGTGCAAATCACAAGTGAGAAACAGGCAAAAATT
GCTGCCAAGAAGGTTTTTATTAATGTGGCGAAGCCTGACTCAAAGTTCATCTATCTGGAG
GATATAATGCGTTTTATGAGAGAAGATGAAGCTTTGAAAACAATGCAGCTCTTTGAAGGC
GGAACTGAAGCCAAAGGAATTAGTAAACGCGCGCTGAAAAATTGGGTGGTGAATGCATTT
AGAGAACGGAGAGCTCTTGCTTTGTCTTTAAACGACACAAAGACTGCCGTTAACAAACTA
CATCACATGTTGAACGTCTTAGTAGGGGTTATCATACTTGTCGTCTGGCTTCTTATACTC
AAAGTTGCCACTACACATTTCCTGGTCTTTATGAGCTCTCAGGTTCTTCTGGTTGTATTC
ATGTTTGGGAACACTGCCAAGACAACATTCGAGGCAATCATATTCTTATTTGTGATGCAC
CCATTTGATGTAGGCGATCGTGTTGAAATTGACGGAGTTCATATGATTGTAGAAGAGATG
AATATATTGACTACGGTTCTCCTGAGATTTGATAACCTGAAGATCATATATCCCAACAGT
GTCTTATCTACAAAGCCCATAAGTAACTACTATCGCAGTCCAGACATGGGTGATGCAATC
GAATTCTGCATTCATATCTCAACTCCTATGGAAAAAATAGCATCAATGAAAGAGAAAATA
ACAAGGTATATTCAGAACAAAAGTGATCATTGGTATCCAGATCCCTCAGTTGTGATGAGG
GATGTTGAAGACTTGAACAGGATAAAGTGGTCAGTATGGATTTCACACACAATGAATTTC
CAAGACATGGGAGAGAGATGGGCAAGGAGAGCTCTTTTAATTGAGGAAATGGTTAAGATA
TTCAGAGAGCTAGATATCGAATATCGTATGCTCCCTCTTGATGTCAATGTTCGTAATATG
CCACAGATATCATCGAGCAGAGTCCCTTCTAACTGGTCTCTCTGTGCTTAA

Peptide Sequence

PEP ID

Solyc04g082040.3.1
PEP Infomation

Mechanosensitive ion channel family protein (AHRD V3.3 *** AT2G17010.1)
Sequence

MEKLRSFKSLSPVHHLHRANSPSHPIEERQNLLKETSIPSVSTLGSQAMDGTEGKEVVVK
PNIRETSKTHKETELSSSSSSSKTQLSNNASTDESTLNKIYRDCSYDFSNDAAMKRMRDN
SKDFDFVTESPFSQPSPLSRVEESPNHGVLTPREVRVSFNEKLAGNGSIRRRSNLSTGPG
LQDEVVLSTSSSFRRKSNLLAATRTKSRLMDPPEQDQRSQKITMKSGILGRSTEFEDDDP
FSDEDLPEEYKKMKFNLFSVLQMVSLILIIAAFVCSLTIRKFKGRSIFGLALWKWELMVL
VLICGRLVSGWGIRLAVFFIERNFVLRKRVLYFVYGLRNSVQNCIWLSLVLIAWQCIFDK
KVESITNTKVLRYVSRIWVCLLLGTFIWLLKTLLVKVLATSFHVTAFFDRIQEALFTQYV
IETLSGPPLVEIKMELEEEERVIAEVQKLQSAGATLPPDLKASIFPKRPIGTPRKSTAAA
TPRSPVFSRAASRKEKEEQGGITIDHLHRLNQKNISAWNMKRLINIVRKGVLSTLDEKLE
QSNGDDEAAVQITSEKQAKIAAKKVFINVAKPDSKFIYLEDIMRFMREDEALKTMQLFEG
GTEAKGISKRALKNWVVNAFRERRALALSLNDTKTAVNKLHHMLNVLVGVIILVVWLLIL
KVATTHFLVFMSSQVLLVVFMFGNTAKTTFEAIIFLFVMHPFDVGDRVEIDGVHMIVEEM
NILTTVLLRFDNLKIIYPNSVLSTKPISNYYRSPDMGDAIEFCIHISTPMEKIASMKEKI
TRYIQNKSDHWYPDPSVVMRDVEDLNRIKWSVWISHTMNFQDMGERWARRALLIEEMVKI
FRELDIEYRMLPLDVNVRNMPQISSSRVPSNWSLCA*

Transcript Sequence

Transcript ID

Solyc04g082040.3.1
Transcript Infomation

Mechanosensitive ion channel family protein (AHRD V3.3 *** AT2G17010.1)
Sequence

ATTCACACACTAAAAAAAATTCAACTGTGTTAATCTCTCTCTGTCGCTCTGTTAATCTCA
CCGCCATTGCCGTATTAAAATATTCATTTGTTTCAGACTTTGTTTAGTATTGACCCTTTT
TCTTTGTTTCCTCTGTTTTAATGGAAAAGTTGAGGTCTTTCAAATCTCTGTCTCCAGTTC
ATCATCTTCATCGTGCTAACTCTCCTTCACATCCAATAGAAGAACGTCAAAATTTATTGA
AAGAAACCTCAATACCCAGTGTTTCTACTTTGGGTTCTCAAGCTATGGATGGAACTGAGG
GTAAAGAAGTAGTTGTCAAACCGAATATCAGAGAAACCTCCAAAACCCATAAAGAAACAG
AGCTCTCCTCTTCTTCATCTTCTTCGAAAACCCAGTTGAGTAACAATGCCAGTACCGATG
AGAGTACACTGAATAAGATATATAGAGATTGCAGTTACGATTTCTCTAACGATGCAGCAA
TGAAACGCATGAGGGATAACAGCAAAGATTTCGATTTTGTAACGGAATCGCCATTTTCAC
AGCCGTCTCCGTTATCTAGGGTGGAAGAAAGCCCCAACCACGGCGTCCTTACACCGAGGG
AAGTTCGGGTTTCTTTCAATGAGAAACTTGCCGGTAACGGATCGATTCGCCGGCGGTCCA
ATTTGAGTACTGGACCGGGTTTACAAGATGAGGTTGTGCTCAGTACCAGCTCTTCGTTTA
GGAGAAAATCGAATCTTTTAGCTGCTACTAGAACAAAATCGAGGTTAATGGACCCACCTG
AGCAAGATCAAAGGTCACAGAAGATTACTATGAAATCTGGGATTTTGGGGAGAAGTACTG
AATTTGAAGATGATGACCCTTTTTCAGATGAGGATTTACCAGAAGAGTATAAGAAAATGA
AGTTTAATTTATTCTCTGTTCTTCAGATGGTGAGTTTGATTTTGATAATTGCAGCTTTTG
TTTGTAGTCTTACTATTAGAAAATTCAAGGGGAGGAGTATATTTGGGCTTGCATTGTGGA
AATGGGAGTTAATGGTTTTAGTGTTGATTTGTGGGAGATTAGTTTCCGGATGGGGGATTA
GATTGGCTGTGTTCTTTATTGAGAGGAATTTCGTGTTGCGTAAAAGAGTGTTGTATTTTG
TCTATGGTTTGAGGAACTCAGTGCAGAATTGCATTTGGTTGAGTCTTGTTTTGATTGCTT
GGCAATGTATTTTTGATAAGAAAGTTGAGAGTATTACGAATACGAAGGTATTAAGGTATG
TGTCTCGGATTTGGGTGTGTCTTTTGTTGGGAACATTCATTTGGTTGCTGAAGACACTGT
TGGTGAAGGTTTTGGCTACATCATTTCATGTTACTGCATTCTTTGATCGGATTCAAGAAG
CCTTGTTTACACAGTATGTGATTGAGACGTTGTCTGGACCGCCGTTGGTTGAGATTAAGA
TGGAGTTAGAGGAGGAGGAGAGGGTAATTGCTGAAGTCCAGAAGCTTCAGAGTGCTGGGG
CTACATTGCCCCCTGATCTCAAGGCCAGTATATTTCCAAAGAGACCGATTGGGACTCCAC
GGAAGTCCACTGCTGCTGCTACTCCTAGGAGTCCTGTATTTTCGAGAGCTGCTTCAAGAA
AGGAAAAAGAAGAACAGGGAGGCATAACTATAGATCATCTACATAGACTGAATCAGAAGA
ACATTTCAGCTTGGAATATGAAAAGGTTGATAAATATTGTTCGTAAAGGTGTGCTGTCAA
CTTTGGATGAGAAACTTGAACAGTCAAATGGCGATGATGAAGCTGCAGTGCAAATCACAA
GTGAGAAACAGGCAAAAATTGCTGCCAAGAAGGTTTTTATTAATGTGGCGAAGCCTGACT
CAAAGTTCATCTATCTGGAGGATATAATGCGTTTTATGAGAGAAGATGAAGCTTTGAAAA
CAATGCAGCTCTTTGAAGGCGGAACTGAAGCCAAAGGAATTAGTAAACGCGCGCTGAAAA
ATTGGGTGGTGAATGCATTTAGAGAACGGAGAGCTCTTGCTTTGTCTTTAAACGACACAA
AGACTGCCGTTAACAAACTACATCACATGTTGAACGTCTTAGTAGGGGTTATCATACTTG
TCGTCTGGCTTCTTATACTCAAAGTTGCCACTACACATTTCCTGGTCTTTATGAGCTCTC
AGGTTCTTCTGGTTGTATTCATGTTTGGGAACACTGCCAAGACAACATTCGAGGCAATCA
TATTCTTATTTGTGATGCACCCATTTGATGTAGGCGATCGTGTTGAAATTGACGGAGTTC
ATATGATTGTAGAAGAGATGAATATATTGACTACGGTTCTCCTGAGATTTGATAACCTGA
AGATCATATATCCCAACAGTGTCTTATCTACAAAGCCCATAAGTAACTACTATCGCAGTC
CAGACATGGGTGATGCAATCGAATTCTGCATTCATATCTCAACTCCTATGGAAAAAATAG
CATCAATGAAAGAGAAAATAACAAGGTATATTCAGAACAAAAGTGATCATTGGTATCCAG
ATCCCTCAGTTGTGATGAGGGATGTTGAAGACTTGAACAGGATAAAGTGGTCAGTATGGA
TTTCACACACAATGAATTTCCAAGACATGGGAGAGAGATGGGCAAGGAGAGCTCTTTTAA
TTGAGGAAATGGTTAAGATATTCAGAGAGCTAGATATCGAATATCGTATGCTCCCTCTTG
ATGTCAATGTTCGTAATATGCCACAGATATCATCGAGCAGAGTCCCTTCTAACTGGTCTC
TCTGTGCTTAATCGATGATTGAAACGTCTACTCATCTGAAAATTCTCGCCAGAGACCATT
GAAGATAGGTGAGTTTGTTAATGAAGCATTGCAATCTTGAAAATTATCTATGGTAAAGCA
GTTTTGATCAGTCAATATTTGGTGAGTTATGTACATAATGAGCTGGTCTCATTTTTAGTT
GAAAATTTCTCAAGTTGAAGGTGAAATTCCATAGAAATTGCCACAATTATGTAGTTATAT
ATACTTTCTAGTACCTAATCTTAAATCTTATAATTGTCATGAAAAGTTCTATCTTTTT