Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g081750.3.1
CDS Infomation

RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3 *** AT1G20110.1)
Sequence

ATGCAACAAGGCGATTACACCACCTCCAATCCCTATTACAATTACCCTAACTCCGGCCAT
ATCTCGCCGGCTCCGATCCCAAACCCCACCCCTTCACCACCGTCATACGCTTCTGCTCCG
CCGTTCGCCGCCACTTACCCTCCATCTTCAGATTACTCATCATATCCCTCTTCTTACCCG
AATCATTATACTCAAAATCCTGATTTACTCTCCACTGCTCCAGCACCTCCGTTACAGTCC
TACAATCCTCCACCACCGGCGCAGGTTCCGGTTCCGGCGTTGCAACAGCCTCAGCACTCC
TCTCCGTTTCCTTCGTTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCT
CAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGT
ACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGG
AAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGT
TCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGT
AATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGG
GCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGG
CCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAG
GCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTG
AAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGATTGGCTTG
GATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGAC
ACGGTAACTAGACTTGAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCA
GTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTG
TTAGATACAGTCACGGCTGCGGTTGTACAGTTCAAGGAGATGGGTGGAAGAATAATGTCT
TCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGG
ATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTTCCTGATGAAGCAGTT
TCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGCATCACTGTCGG
AATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGAT
GAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGCTGAGGTTTCTCGTCGGCTA
AGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCC
AAGAAGCTTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGCTCTAGACAAGAT
CGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTCAA
GTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTT
AGTTCGCACTGA

Peptide Sequence

PEP ID

Solyc04g081750.3.1
PEP Infomation

RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3 *** AT1G20110.1)
Sequence

MQQGDYTTSNPYYNYPNSGHISPAPIPNPTPSPPSYASAPPFAATYPPSSDYSSYPSSYP
NHYTQNPDLLSTAPAPPLQSYNPPPPAQVPVPALQQPQHSSPFPSFESHGAYQNPVHSQP
QQPYYPPYDQPQAAPSYNHSTTPNSSYPSVYSTPNYDNTGKFDQSGQYFDEPVDKYGNYG
SGRGEFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGR
PIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGL
DGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSL
LDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVPDEAV
SKCTACGSAFNAFVRRHHCRNCGDIFCDKCTQGRTALTADENAPVVRVCDRCTAEVSRRL
SSAKETVNRSTGLQSHEDLAKKLQEEMERNRKGSSGSRQDRSGRMKEVACPTCTVHLQVQ
VPSSGSETIECGVCQNPFLVSSH*

Transcript Sequence

Transcript ID

Solyc04g081750.3.1
Transcript Infomation

RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3 *** AT1G20110.1)
Sequence

CTTCTCTTCAATCATACGAAACAAAGATCATCGATCAGAAGAGAGAGAAAAAAAAAAAAA
ACTCAAAGCTCTCTGAATTTCCCGAATCAAAAAATGCAACAAGGCGATTACACCACCTCC
AATCCCTATTACAATTACCCTAACTCCGGCCATATCTCGCCGGCTCCGATCCCAAACCCC
ACCCCTTCACCACCGTCATACGCTTCTGCTCCGCCGTTCGCCGCCACTTACCCTCCATCT
TCAGATTACTCATCATATCCCTCTTCTTACCCGAATCATTATACTCAAAATCCTGATTTA
CTCTCCACTGCTCCAGCACCTCCGTTACAGTCCTACAATCCTCCACCACCGGCGCAGGTT
CCGGTTCCGGCGTTGCAACAGCCTCAGCACTCCTCTCCGTTTCCTTCGTTTGAATCCCAC
GGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGAT
CAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCA
GTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTT
GATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGAT
ACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTT
GCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCG
ACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAA
CGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAG
GATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAG
AGTACCCAGGATGTTCTTTGCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGC
ACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGCGACGGAT
TCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGA
CTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTA
CAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAG
CCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAG
GAGAAAGATCACTGGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCC
TTCAATGCTTTTGTGCGCAGGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAA
TGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGT
GACCGATGTACGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGA
TCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGAGGAGATGGAGAGA
AACCGAAAAGGATCATCTGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCT
TGCCCTACTTGTACAGTACATTTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATA
GAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCG
TCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTT
CGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTT
GTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTT
TTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAA
TCAATTTGATTTCTTAAACCCTTGTCCT