Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g080970.3.1
CDS Infomation

Lateral root primordium protein-related, putative (AHRD V3.3 *** A0A061DFV6_THECC)
Sequence

ATGATCAATACCATAATGTCTGGATTCTTCACACTAGGAGGTGGTGGAGGTGGAGGTGGA
AATAAGAGCCAACCACAACAAGAGCAAGATCAACTAGCTACAAATAGCTTACTTCTTTTC
AAAGACGACGAGATCTACAATAAGGGTTTCGAGTTATGGCAGCAGTACTATCAGTTGCAT
CAACAACGAGCACATCCTCCTCATCATCAAGCACAAGATGTGGATTTCTCAGTTGGTGTG
GGGCCCAGTTGTAACAGAAGAATCATCAGTACTGGTAGCAGTAGTAGTAGTGGTGGTAAC
AATAACATTGTCGGTGGTGGTACTGATGATCATCATCATCATCAAAATATTACTAACCAT
TATACTAATTCGTCTTCTTATAGATCATCATCAGGGTTTCGCGTTATGCGTCCCAGTAGT
AGTGGTGGTGCTGGTGGAGGAATTAACTGTCAAGATTGTGGAAATCAAGCTAAAAAAGAC
TGTTCACATTTGAGGTGCCGGACTTGCTGTAAGAGCAGAGGATTTCAATGTAATACACAC
GTTAAAAGTACCTGGGTACCTGCTGCTAAAAGACGTGAACGGTTGCAACAACTTACTGCC
ATACAACAAAATCAACAACAACAAACTCAACTTCTTAGCTTGAGAGCTGATCATCACTCT
AATATCCCAAAAAGGCCAAGAGAAAACCCATCTTCCTCCTCTCTTGCTTGCACTCGAATA
CCCAACATCTTATCAGGGTTAGAGTTAGGTGGTCATTTTCCTTCAGAAGTGAGTTCTCAA
GCTGTTTTTCGATGCGTAAAAGTGAGTGCAATCGACGATGCAGATGATCAATACGCTTAT
CATACGGCTGTGAATATTGGTGGACATTTATTCAAAGGAATTCTGTATGATCAAGGGGTA
GAAGGTCGATATAGTGGTGGCGTTGGTGGTGGTGGAGAGAGTTCATCTGGTAGTGGCGCC
GCTCAACAAGCACTGAATTTTATAACCGGCGCCACTACATCCACCACCACAGCAGTAGCC
ACCACTAGTCACCAACATCAACCAGCTGTGACAATGTATGATCCTTCAGTGTATCCAACT
CCTATTACTGCTTTCCTGGCCGGTACGCAATTCTTTCCACCTCCCCGGCCTTAA

Peptide Sequence

PEP ID

Solyc04g080970.3.1
PEP Infomation

Lateral root primordium protein-related, putative (AHRD V3.3 *** A0A061DFV6_THECC)
Sequence

MINTIMSGFFTLGGGGGGGGNKSQPQQEQDQLATNSLLLFKDDEIYNKGFELWQQYYQLH
QQRAHPPHHQAQDVDFSVGVGPSCNRRIISTGSSSSSGGNNNIVGGGTDDHHHHQNITNH
YTNSSSYRSSSGFRVMRPSSSGGAGGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCNTH
VKSTWVPAAKRRERLQQLTAIQQNQQQQTQLLSLRADHHSNIPKRPRENPSSSSLACTRI
PNILSGLELGGHFPSEVSSQAVFRCVKVSAIDDADDQYAYHTAVNIGGHLFKGILYDQGV
EGRYSGGVGGGGESSSGSGAAQQALNFITGATTSTTTAVATTSHQHQPAVTMYDPSVYPT
PITAFLAGTQFFPPPRP*

Transcript Sequence

Transcript ID

Solyc04g080970.3.1
Transcript Infomation

Lateral root primordium protein-related, putative (AHRD V3.3 *** A0A061DFV6_THECC)
Sequence

ATGATCAATACCATAATGTCTGGATTCTTCACACTAGGAGGTGGTGGAGGTGGAGGTGGA
AATAAGAGCCAACCACAACAAGAGCAAGATCAACTAGCTACAAATAGCTTACTTCTTTTC
AAAGACGACGAGATCTACAATAAGGGTTTCGAGTTATGGCAGCAGTACTATCAGTTGCAT
CAACAACGAGCACATCCTCCTCATCATCAAGCACAAGATGTGGATTTCTCAGTTGGTGTG
GGGCCCAGTTGTAACAGAAGAATCATCAGTACTGGTAGCAGTAGTAGTAGTGGTGGTAAC
AATAACATTGTCGGTGGTGGTACTGATGATCATCATCATCATCAAAATATTACTAACCAT
TATACTAATTCGTCTTCTTATAGATCATCATCAGGGTTTCGCGTTATGCGTCCCAGTAGT
AGTGGTGGTGCTGGTGGAGGAATTAACTGTCAAGATTGTGGAAATCAAGCTAAAAAAGAC
TGTTCACATTTGAGGTGCCGGACTTGCTGTAAGAGCAGAGGATTTCAATGTAATACACAC
GTTAAAAGTACCTGGGTACCTGCTGCTAAAAGACGTGAACGGTTGCAACAACTTACTGCC
ATACAACAAAATCAACAACAACAAACTCAACTTCTTAGCTTGAGAGCTGATCATCACTCT
AATATCCCAAAAAGGCCAAGAGAAAACCCATCTTCCTCCTCTCTTGCTTGCACTCGAATA
CCCAACATCTTATCAGGGTTAGAGTTAGGTGGTCATTTTCCTTCAGAAGTGAGTTCTCAA
GCTGTTTTTCGATGCGTAAAAGTGAGTGCAATCGACGATGCAGATGATCAATACGCTTAT
CATACGGCTGTGAATATTGGTGGACATTTATTCAAAGGAATTCTGTATGATCAAGGGGTA
GAAGGTCGATATAGTGGTGGCGTTGGTGGTGGTGGAGAGAGTTCATCTGGTAGTGGCGCC
GCTCAACAAGCACTGAATTTTATAACCGGCGCCACTACATCCACCACCACAGCAGTAGCC
ACCACTAGTCACCAACATCAACCAGCTGTGACAATGTATGATCCTTCAGTGTATCCAACT
CCTATTACTGCTTTCCTGGCCGGTACGCAATTCTTTCCACCTCCCCGGCCTTAAGCAGAG
ACGGATTCAGAATTTATG