Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g079960.1.1
CDS Infomation

geranylgeranyl pyrophosphate synthase 2
Sequence

ATGAGATCTATGAACCTTGTTGATTCATGGGGTCAAGCTTGTCTAGTTATCAATCAATCT
TTACCTTACAATTCGTTTAATGGATTGATGAAAATCAATTCGAAAAATCGAAAAATTTTG
CAACAGAGTTTATCTTATAGAACATTTTCATCTGTAACTGTTTCAGCTATTGCTACCAAT
GAGAAAGTTGTTATGGAAAAAGAAGAATTTAATTTCAAGGTTTACGTAGCTGAAAAGGCG
ATTTGTGTAAATAAAGCTTTGGATGAGGCTATAATGGTAAAAGACCCACCTAAGATCCAT
GAAGCAATGCGTTATTCGCTTCTCGCCGGCGGGAAGAGAGTCCGGCCGATGCTCTGTCTT
GCTGCCTGTGAACTTGTTGGGGGAAACCAAGGGAATGCTATGGCGGCTGCTTGTGCTGTT
GAGATGATACATACTATGTCTCTAATTCATGATGATTTGCCTTGTATGGATGACGACGAT
CTCCGCCGTGGAAAGCCGACGAATCATAAAGTGTACGGTGAGGATGTGGCGGTCCTCGCC
GGAGATGCGCTACTTGCTTTCGCATTCGAGTACCTCGCTACCGCTACAACCGGAGTTTCT
CCGTCGAGGATCCTCGTTGCTGTCGCCGAATTGGCGAAATCTGTTGGAACTGAAGGGTTA
GTAGCTGGACAAGTAGCGGATTTAGCTTGTACTGGTAACCCTAATGTGGGATTAGAAATG
CTTGAATTCATTCACATACACAAAACGGCGGCGTTGCTAGAAGCTTCCGTTGTAATCGGA
GCAATCCTCGGCGGCGGAGCTGATGAAGAAGTGGATAAGTTAAGGAGATTTGCCCAATGC
ATCGGTTTATTGTTTCAGGTAGTTGATGATATCCTTGACGTGACAAAGTCATCGTCGGAG
CTCGGAAAAACCGCCGGAAAAGATTTGGCGGTTGATAAAACGACGTATCCGAAGCTGCTG
GGATTGGAAAAGGCTAAGGAATTTGCGGCGGAGCTCAACGGCGAAGCTAAACAACAGCTG
GCGGCGTTTGATTCACACAAAGCTGCTCCATTGATTGCTTTAGCAGATTACATTGCTAAT
CGTCAAAATTAA

Peptide Sequence

PEP ID

Solyc04g079960.1.1
PEP Infomation

geranylgeranyl pyrophosphate synthase 2
Sequence

MRSMNLVDSWGQACLVINQSLPYNSFNGLMKINSKNRKILQQSLSYRTFSSVTVSAIATN
EKVVMEKEEFNFKVYVAEKAICVNKALDEAIMVKDPPKIHEAMRYSLLAGGKRVRPMLCL
AACELVGGNQGNAMAAACAVEMIHTMSLIHDDLPCMDDDDLRRGKPTNHKVYGEDVAVLA
GDALLAFAFEYLATATTGVSPSRILVAVAELAKSVGTEGLVAGQVADLACTGNPNVGLEM
LEFIHIHKTAALLEASVVIGAILGGGADEEVDKLRRFAQCIGLLFQVVDDILDVTKSSSE
LGKTAGKDLAVDKTTYPKLLGLEKAKEFAAELNGEAKQQLAAFDSHKAAPLIALADYIAN
RQN*

Transcript Sequence

Transcript ID

Solyc04g079960.1.1
Transcript Infomation

geranylgeranyl pyrophosphate synthase 2
Sequence

ATGAGATCTATGAACCTTGTTGATTCATGGGGTCAAGCTTGTCTAGTTATCAATCAATCT
TTACCTTACAATTCGTTTAATGGATTGATGAAAATCAATTCGAAAAATCGAAAAATTTTG
CAACAGAGTTTATCTTATAGAACATTTTCATCTGTAACTGTTTCAGCTATTGCTACCAAT
GAGAAAGTTGTTATGGAAAAAGAAGAATTTAATTTCAAGGTTTACGTAGCTGAAAAGGCG
ATTTGTGTAAATAAAGCTTTGGATGAGGCTATAATGGTAAAAGACCCACCTAAGATCCAT
GAAGCAATGCGTTATTCGCTTCTCGCCGGCGGGAAGAGAGTCCGGCCGATGCTCTGTCTT
GCTGCCTGTGAACTTGTTGGGGGAAACCAAGGGAATGCTATGGCGGCTGCTTGTGCTGTT
GAGATGATACATACTATGTCTCTAATTCATGATGATTTGCCTTGTATGGATGACGACGAT
CTCCGCCGTGGAAAGCCGACGAATCATAAAGTGTACGGTGAGGATGTGGCGGTCCTCGCC
GGAGATGCGCTACTTGCTTTCGCATTCGAGTACCTCGCTACCGCTACAACCGGAGTTTCT
CCGTCGAGGATCCTCGTTGCTGTCGCCGAATTGGCGAAATCTGTTGGAACTGAAGGGTTA
GTAGCTGGACAAGTAGCGGATTTAGCTTGTACTGGTAACCCTAATGTGGGATTAGAAATG
CTTGAATTCATTCACATACACAAAACGGCGGCGTTGCTAGAAGCTTCCGTTGTAATCGGA
GCAATCCTCGGCGGCGGAGCTGATGAAGAAGTGGATAAGTTAAGGAGATTTGCCCAATGC
ATCGGTTTATTGTTTCAGGTAGTTGATGATATCCTTGACGTGACAAAGTCATCGTCGGAG
CTCGGAAAAACCGCCGGAAAAGATTTGGCGGTTGATAAAACGACGTATCCGAAGCTGCTG
GGATTGGAAAAGGCTAAGGAATTTGCGGCGGAGCTCAACGGCGAAGCTAAACAACAGCTG
GCGGCGTTTGATTCACACAAAGCTGCTCCATTGATTGCTTTAGCAGATTACATTGCTAAT
CGTCAAAATTAA