Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g079150.1.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HVN1_POPTR)
Sequence

ATGTCTCAGCTCAAAGTTGTCTCATTTATCAGCAAGACTTTGAGTAGGAAATTACATTCC
CAAAATTGCATTTTTCATCAAAATATAAGGCGAAATTCAGTAGCATCAACACATATTCAT
GAACATTGCATAAAATACGTATTTGCTACGAGGGGATCATTAATCTTGAACACAAGTTCA
AGATTTTGTCTGCCATCATTCTTGTCCTTTCAGCGGTTTTATTGTGCTGAAAATTCTGCA
TTTTCGTCGTTGGAGGAAACAACGGAAAGCTGTAGCAATGATCCTGTTGATAACGTTTAC
AAGGTTGTGGTGGATCATGCTAATCCAGGGCATAAAATGGAGGTAGCTCTGGATAAGCTT
GAAATAGAATTAACTACGCCGTTGGTGGTGGAGGTCTTGCGAAAGCTTTGTTATGAAGAG
AAGTTAGCATTTAGGTTCTTTACGTGGGCAGGACATCGAGAAAATTATAGTCACGAGTCT
CAGGCGTATAATGAGATGATTGATATATTGTCTAGTACAAAATATAAGGTGAAGCAGTTT
CGTGTTGTTTGTGATCTTCTAGATTACATGAAGAGAAATGATAAGAGTTTGGTTCCTTTA
GAAGTGTTGTTAAAAATTCTTAGACAGTATACTGAAAAGCATTTGACACATCTTCACAAA
TTTGCTAAGAAGAAGAAGATACGAGTGAAGACACAACCCGAAGTATATGCCTTTAATTTG
TTGTTGGATGCTTTGTGCAAGTGTTGTCTTGTTGAGGAAGCTGAGGCTCTGTTTACGCGG
GTGAAGAGTAAGGTTAAGCCAACTGCTGATACTTATAACATTCTTTTCTTCGGTTGGTGT
CGTGTTAGAAATCCAGGTAGAGCTATGAGCGTTCTTGATCAGATGATCAACATAGGACAT
AAACCCGATAACTTCACCTATAATACTGCCATTGAGACGTTTTGCAACGCAGGAATGGTA
ATGCAGGCTGCTGACCTTCTCGAGTTCATGAGAACTAAAGGTTCAACCATGTCTTCTCCC
ACAGCAAAAACTTATACTATTATGATCGTGGCTCTTGTTCAGAATGATATGATGGTAGAA
TATTCTAAAGTTCTCGGAGATATGCTAAATAGTGGATGTGTTCCTGATGTTTTGACATAC
AAGGAATTGATTGAAGGTATGTGTCTGGCTGGAAAGACCGAGGCAGCTTATAAGCTTTTG
GAAGAAATGGGAAACAAGGGCTACCCTGCTGATATAGTTACCTACAACTGTTTTCTTAAG
GTCCTATGTGACAACAAAGACAGAGACGAAGCGCTTAGGCTTTATCAGAAAATGACGGAG
GTAGGCTGTGTTCCCAGCGTACAGACCTATAATATGCTAATTGTAATGTTCTTTAGAATG
GGTGATGTCGATGGAGCCTTTGAGACCTGGCACGAGATGTCTAAGAGGGGTTGTACGCGT
GTTACAGAAACATATTGTGTGATGATTGAAGGACTTTTTGATAACAATGCTACTGAAGAA
GCATGTTTCCTTTTGGAAGAAGCTGTCAACAGGGGTATGAAACTGCCATACCGCAAATTT
GACTCATTTTTAATGCGACTTTCAGCCATTGGTGATCTACGAGCCATTCATAAACTGTCA
GAGCACATGAGAACATTCTACAACCCAGCTATGGCACGACGTTTTGCCATCAATCAGAGG
CAGAAGAGCATGAAATTAAGAGGTAAGTGA

Peptide Sequence

PEP ID

Solyc04g079150.1.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HVN1_POPTR)
Sequence

MSQLKVVSFISKTLSRKLHSQNCIFHQNIRRNSVASTHIHEHCIKYVFATRGSLILNTSS
RFCLPSFLSFQRFYCAENSAFSSLEETTESCSNDPVDNVYKVVVDHANPGHKMEVALDKL
EIELTTPLVVEVLRKLCYEEKLAFRFFTWAGHRENYSHESQAYNEMIDILSSTKYKVKQF
RVVCDLLDYMKRNDKSLVPLEVLLKILRQYTEKHLTHLHKFAKKKKIRVKTQPEVYAFNL
LLDALCKCCLVEEAEALFTRVKSKVKPTADTYNILFFGWCRVRNPGRAMSVLDQMINIGH
KPDNFTYNTAIETFCNAGMVMQAADLLEFMRTKGSTMSSPTAKTYTIMIVALVQNDMMVE
YSKVLGDMLNSGCVPDVLTYKELIEGMCLAGKTEAAYKLLEEMGNKGYPADIVTYNCFLK
VLCDNKDRDEALRLYQKMTEVGCVPSVQTYNMLIVMFFRMGDVDGAFETWHEMSKRGCTR
VTETYCVMIEGLFDNNATEEACFLLEEAVNRGMKLPYRKFDSFLMRLSAIGDLRAIHKLS
EHMRTFYNPAMARRFAINQRQKSMKLRGK*

Transcript Sequence

Transcript ID

Solyc04g079150.1.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HVN1_POPTR)
Sequence

ATGTCTCAGCTCAAAGTTGTCTCATTTATCAGCAAGACTTTGAGTAGGAAATTACATTCC
CAAAATTGCATTTTTCATCAAAATATAAGGCGAAATTCAGTAGCATCAACACATATTCAT
GAACATTGCATAAAATACGTATTTGCTACGAGGGGATCATTAATCTTGAACACAAGTTCA
AGATTTTGTCTGCCATCATTCTTGTCCTTTCAGCGGTTTTATTGTGCTGAAAATTCTGCA
TTTTCGTCGTTGGAGGAAACAACGGAAAGCTGTAGCAATGATCCTGTTGATAACGTTTAC
AAGGTTGTGGTGGATCATGCTAATCCAGGGCATAAAATGGAGGTAGCTCTGGATAAGCTT
GAAATAGAATTAACTACGCCGTTGGTGGTGGAGGTCTTGCGAAAGCTTTGTTATGAAGAG
AAGTTAGCATTTAGGTTCTTTACGTGGGCAGGACATCGAGAAAATTATAGTCACGAGTCT
CAGGCGTATAATGAGATGATTGATATATTGTCTAGTACAAAATATAAGGTGAAGCAGTTT
CGTGTTGTTTGTGATCTTCTAGATTACATGAAGAGAAATGATAAGAGTTTGGTTCCTTTA
GAAGTGTTGTTAAAAATTCTTAGACAGTATACTGAAAAGCATTTGACACATCTTCACAAA
TTTGCTAAGAAGAAGAAGATACGAGTGAAGACACAACCCGAAGTATATGCCTTTAATTTG
TTGTTGGATGCTTTGTGCAAGTGTTGTCTTGTTGAGGAAGCTGAGGCTCTGTTTACGCGG
GTGAAGAGTAAGGTTAAGCCAACTGCTGATACTTATAACATTCTTTTCTTCGGTTGGTGT
CGTGTTAGAAATCCAGGTAGAGCTATGAGCGTTCTTGATCAGATGATCAACATAGGACAT
AAACCCGATAACTTCACCTATAATACTGCCATTGAGACGTTTTGCAACGCAGGAATGGTA
ATGCAGGCTGCTGACCTTCTCGAGTTCATGAGAACTAAAGGTTCAACCATGTCTTCTCCC
ACAGCAAAAACTTATACTATTATGATCGTGGCTCTTGTTCAGAATGATATGATGGTAGAA
TATTCTAAAGTTCTCGGAGATATGCTAAATAGTGGATGTGTTCCTGATGTTTTGACATAC
AAGGAATTGATTGAAGGTATGTGTCTGGCTGGAAAGACCGAGGCAGCTTATAAGCTTTTG
GAAGAAATGGGAAACAAGGGCTACCCTGCTGATATAGTTACCTACAACTGTTTTCTTAAG
GTCCTATGTGACAACAAAGACAGAGACGAAGCGCTTAGGCTTTATCAGAAAATGACGGAG
GTAGGCTGTGTTCCCAGCGTACAGACCTATAATATGCTAATTGTAATGTTCTTTAGAATG
GGTGATGTCGATGGAGCCTTTGAGACCTGGCACGAGATGTCTAAGAGGGGTTGTACGCGT
GTTACAGAAACATATTGTGTGATGATTGAAGGACTTTTTGATAACAATGCTACTGAAGAA
GCATGTTTCCTTTTGGAAGAAGCTGTCAACAGGGGTATGAAACTGCCATACCGCAAATTT
GACTCATTTTTAATGCGACTTTCAGCCATTGGTGATCTACGAGCCATTCATAAACTGTCA
GAGCACATGAGAACATTCTACAACCCAGCTATGGCACGACGTTTTGCCATCAATCAGAGG
CAGAAGAGCATGAAATTAAGAGGTAAGTGA