Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g078170.2.1
CDS Infomation

Tetratricopeptide repeat-containing protein (AHRD V3.3 *** D7MQ06_ARALL)
Sequence

ATGAATATTTCTCTCAAGAAAAAAGAAAAAATTCCAATTCCCACCATGCCTAGTTTGGGT
GAGAAATGTTGCTATAATAACCATTTAGGTTGTTTCTTTTGCATAATGAAGGAAACAAAT
TCATCAATTAGAAGCAATGGAATAAAAAACTACTTTAAAAAAATGCATTTGATTGATGAA
GATCAAGAACTTGTGCTAGTGTTAAGTGGCCTTTGGACTATGGCAATGTCACAACCAAAT
GACAAAGAGCTTCCATCTTTAGGCATTTTTGAATGCATGGCAAGTCTAATCAACAAAGGT
ATAAATCAAAAATCTTGGCTTCAAAAAGATCAAAATATTTATATTCCTTATTATGCTTCT
CATATTATTGGTTCTTATACTATGAACAATGTTGAGTTTGCTATTAAAGCATTAGATTGT
GGTGTTTTAGTCCCATTATTGGATCTTTTAAGAGGGAATATGACTTGGGTTGAACAAAGA
GTGGCTATTAGAGCAATTGGTCATTTAGCAAGCTATGAAAAGACATTCAAAAGTGTAGCA
ATTTATGAAGAAGAAATTGTGAAATTAGCCATGAATTTGGCTTCAACATGCCTTGATGTT
GTGTACAAAGAGTTTGTTGGTGTGAAGGATTTGAATATGAGATTGAAATATCATTGTGAT
TTGTTGACTAGAGGAGTTGGAGGACTAGAAATGGAAAATAGTAAAGCTGAGGAATGGGCT
AGTCAACTTCAATGTTGGAGTTTACATCTTTTAAATTGCTTTGCAATCAAACAAAGGTGT
TTAAATATCATTTGTGAGCAAAGTTTTTTGAAGGAGTTAAGTGAAATGTGGGGTGGATTG
GCTAATGATTCTTCACCAGGAGGGGTTGGATTAATTAGAGTTTTGTGTTATAATAAAGAT
GGAAGAAGATGTATTGCTGAATCAAAGGATGTAATCAAGAATCTTTGTAATCTTGCAAGA
TCTTCAGATGATTGGCAATATATGGGAATAGATTGTCTACTTCTACTTCTCGCCGATTCA
GGTACAAGGTACAAAGTTCTTCAAGTGGCTTCCATGTGTCTTGTTGATTTAATTGAACTT
AGGACTCTTGGAGGCAGATCAAATGTTGGTAATACAATCACAAGAACTCTTTTATCAGAT
TTCAAACAAAGAAAGGTGAAAATCAAGAATACCGGTGTTCAACAAGTGCTTGAAGAAATA
TGGGGTTTGAAAGTAGATAGGAAGAAAAGGGAGCAAAATATGAGTGATGAGAAACTTGAA
GAGAAAAGGGTAATGGTGAGTTTGATGAAACAACAAGGGAACAACAGTTTTTGGTTAGGG
AAAATTGAAGAAGCAATGATGAAATATAGTGAGGCTTTGGAGTTATGTCCATTAAGATTT
AGAAAAGAAAGAATTGTGCTTTATAGCAATAGAGCACAATGTAAATTGTTATTAGGAGAG
GCTAATGATGCAATTAGTGATACAACTAAAGCTTTATCACTTTCATCTCCAACTAATTCA
CATGCCAAAAGCCTTTGGAGAAGATCACAAGCATATGATATGAAAGGATTAGCTAAAGAG
AGCTTGATGGATTGTATTATGTTTGTTAATTGTTGCTTTAAAATGGATCATACTTCATTA
TCATCATCATCATCAATGAAAAAAAATATGAGAATCCCTTATTATGCTGTTAGAATGATC
AACAAACAAATGGAGTCAACTTGGTTATTTAAAAATGCACAATTGAAGACTTTTGTTGAT
CTTAGTGAAAAAACAAATCAACCACATGATGACATGAGAGCTACAAGAATTCTTTTGCAA
AAGAAGGGTTTCATTAAAGGGCTTTCTAGTATATCAGAAGAACCTCAGTTGATTGAAAAG
GGTGAATTTAGTAGGAGAAATCATGAAATTAAGGACAGGGAAAAACAGAAAAATGAATTC
ACTCAGTCAGTGTAG

Peptide Sequence

PEP ID

Solyc04g078170.2.1
PEP Infomation

Tetratricopeptide repeat-containing protein (AHRD V3.3 *** D7MQ06_ARALL)
Sequence

MNISLKKKEKIPIPTMPSLGEKCCYNNHLGCFFCIMKETNSSIRSNGIKNYFKKMHLIDE
DQELVLVLSGLWTMAMSQPNDKELPSLGIFECMASLINKGINQKSWLQKDQNIYIPYYAS
HIIGSYTMNNVEFAIKALDCGVLVPLLDLLRGNMTWVEQRVAIRAIGHLASYEKTFKSVA
IYEEEIVKLAMNLASTCLDVVYKEFVGVKDLNMRLKYHCDLLTRGVGGLEMENSKAEEWA
SQLQCWSLHLLNCFAIKQRCLNIICEQSFLKELSEMWGGLANDSSPGGVGLIRVLCYNKD
GRRCIAESKDVIKNLCNLARSSDDWQYMGIDCLLLLLADSGTRYKVLQVASMCLVDLIEL
RTLGGRSNVGNTITRTLLSDFKQRKVKIKNTGVQQVLEEIWGLKVDRKKREQNMSDEKLE
EKRVMVSLMKQQGNNSFWLGKIEEAMMKYSEALELCPLRFRKERIVLYSNRAQCKLLLGE
ANDAISDTTKALSLSSPTNSHAKSLWRRSQAYDMKGLAKESLMDCIMFVNCCFKMDHTSL
SSSSSMKKNMRIPYYAVRMINKQMESTWLFKNAQLKTFVDLSEKTNQPHDDMRATRILLQ
KKGFIKGLSSISEEPQLIEKGEFSRRNHEIKDREKQKNEFTQSV*

Transcript Sequence

Transcript ID

Solyc04g078170.2.1
Transcript Infomation

Tetratricopeptide repeat-containing protein (AHRD V3.3 *** D7MQ06_ARALL)
Sequence

ACATCTTCTCATGTATGTTTCCACTTCCGAAAGGCCACAACTTTGACCAACTTTTCCTAT
ACTAAGATGATAATTATCTCCTTTGTATTAACTTGCAAATTTCAACCATAAACACACACT
ACAAAACCCTAGTGTTACTACACCAAAATTTCTCTCCTTGCTTCTACCATGAATATTTCT
CTCAAGAAAAAAGAAAAAATTCCAATTCCCACCATGCCTAGTTTGGGTGAGAAATGTTGC
TATAATAACCATTTAGGTTGTTTCTTTTGCATAATGAAGGAAACAAATTCATCAATTAGA
AGCAATGGAATAAAAAACTACTTTAAAAAAATGCATTTGATTGATGAAGATCAAGAACTT
GTGCTAGTGTTAAGTGGCCTTTGGACTATGGCAATGTCACAACCAAATGACAAAGAGCTT
CCATCTTTAGGCATTTTTGAATGCATGGCAAGTCTAATCAACAAAGGTATAAATCAAAAA
TCTTGGCTTCAAAAAGATCAAAATATTTATATTCCTTATTATGCTTCTCATATTATTGGT
TCTTATACTATGAACAATGTTGAGTTTGCTATTAAAGCATTAGATTGTGGTGTTTTAGTC
CCATTATTGGATCTTTTAAGAGGGAATATGACTTGGGTTGAACAAAGAGTGGCTATTAGA
GCAATTGGTCATTTAGCAAGCTATGAAAAGACATTCAAAAGTGTAGCAATTTATGAAGAA
GAAATTGTGAAATTAGCCATGAATTTGGCTTCAACATGCCTTGATGTTGTGTACAAAGAG
TTTGTTGGTGTGAAGGATTTGAATATGAGATTGAAATATCATTGTGATTTGTTGACTAGA
GGAGTTGGAGGACTAGAAATGGAAAATAGTAAAGCTGAGGAATGGGCTAGTCAACTTCAA
TGTTGGAGTTTACATCTTTTAAATTGCTTTGCAATCAAACAAAGGTGTTTAAATATCATT
TGTGAGCAAAGTTTTTTGAAGGAGTTAAGTGAAATGTGGGGTGGATTGGCTAATGATTCT
TCACCAGGAGGGGTTGGATTAATTAGAGTTTTGTGTTATAATAAAGATGGAAGAAGATGT
ATTGCTGAATCAAAGGATGTAATCAAGAATCTTTGTAATCTTGCAAGATCTTCAGATGAT
TGGCAATATATGGGAATAGATTGTCTACTTCTACTTCTCGCCGATTCAGGTACAAGGTAC
AAAGTTCTTCAAGTGGCTTCCATGTGTCTTGTTGATTTAATTGAACTTAGGACTCTTGGA
GGCAGATCAAATGTTGGTAATACAATCACAAGAACTCTTTTATCAGATTTCAAACAAAGA
AAGGTGAAAATCAAGAATACCGGTGTTCAACAAGTGCTTGAAGAAATATGGGGTTTGAAA
GTAGATAGGAAGAAAAGGGAGCAAAATATGAGTGATGAGAAACTTGAAGAGAAAAGGGTA
ATGGTGAGTTTGATGAAACAACAAGGGAACAACAGTTTTTGGTTAGGGAAAATTGAAGAA
GCAATGATGAAATATAGTGAGGCTTTGGAGTTATGTCCATTAAGATTTAGAAAAGAAAGA
ATTGTGCTTTATAGCAATAGAGCACAATGTAAATTGTTATTAGGAGAGGCTAATGATGCA
ATTAGTGATACAACTAAAGCTTTATCACTTTCATCTCCAACTAATTCACATGCCAAAAGC
CTTTGGAGAAGATCACAAGCATATGATATGAAAGGATTAGCTAAAGAGAGCTTGATGGAT
TGTATTATGTTTGTTAATTGTTGCTTTAAAATGGATCATACTTCATTATCATCATCATCA
TCAATGAAAAAAAATATGAGAATCCCTTATTATGCTGTTAGAATGATCAACAAACAAATG
GAGTCAACTTGGTTATTTAAAAATGCACAATTGAAGACTTTTGTTGATCTTAGTGAAAAA
ACAAATCAACCACATGATGACATGAGAGCTACAAGAATTCTTTTGCAAAAGAAGGGTTTC
ATTAAAGGGCTTTCTAGTATATCAGAAGAACCTCAGTTGATTGAAAAGGGTGAATTTAGT
AGGAGAAATCATGAAATTAAGGACAGGGAAAAACAGAAAAATGAATTCACTCAGTCAGTG
TAGTGAAACTAGACATAATTATATTATTAATTCCCTTGTTTTATCAATCATAGGATAAAA
ATTTTTGCCCACTTCCAATATATATTATATATCGAATATAATCATTTAAGAAATATACTC
TTTTCTTATTGTTTCATTATTAGTTATTTAAATATACAATTTTGGTCTTTATATTGATCT
AGCTACAAGAGAGACACCACCAAAAGGTTTAAGCACTAAGGTGGAGCCAAGGTATCTTAA
AAAGGGTTTCCAAAAATTATCGTTTTTTATATTTTGAACCTTTTTAGAAAATTTTAGCAT
TGT