Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g077600.3.1
CDS Infomation

BSD domain-containing family protein (AHRD V3.3 *** B9IBP6_POPTR)
Sequence

ATGTCATGGCTTGCTCGTTCCATAGCCAACACTCTCCGTCTCGACGACGATGACGGCGAA
GACGGAGTAGAATTCAATCGCAACTATCAAAACGACGTCGTAACGCGTGGTGCCAACTCA
TCAACTGCTTCTCACGCCGTTGACGAAGATACATCGACTTACGAAGAAATCGATTTAGAA
GAACGATCTAATAACGATAACGATTACCGTTCCGGTTCCGATGTTGATGATGAGGATAAT
CAGAATCGCGGTGTGAAGGAGGATTTGTCTGAACTGAAGGAAACCCTAACGCGTCAATTA
TGGGGAGTGGCTTCATTTCTAGCTCCACCACCTCCGCCATTACCGCCGGGGAAATCGGAT
CTGTTTGGTTCGGAAGGGGACCGGATTGAGGATTCCGGGTTGAGTGATGGATCCGAGGAG
GAAGAGGGGGAATATGTTGGGGATGGAGATAGTTACATGGAGAATTTGGATGAAGTGGAG
GAGAGTGAAAGTAATGCTGTTGGAGTGACAGAGGAAGTGTTAGCTTTTGCTAGCAATATA
GCTCATCATCCGGAGACTTGGTTGGATTTTCCGTTTGCTGATGAAGAAGAATTTGATGAT
TTTGAGCTCTCTGAGGCCCAACTGAGGCATGCATATGCTGTTGAACGTCTAACGCCGAGA
CTAGCTGCTCTCAGATTCGAACTTTCTCCTGCTCATTTGAGTGAAGGCTTCTTTTGGATG
GTCTATTTTGTTCTACTTTACTCAAGACTGAAAAAGCAGGACGCTGAGCTTTTGTCTACA
TCTCAGCTTGTAGAGGCAAGGGCTATGTGGATGCAAGAGCTGCAAAAGAAAACAAAACCA
GAGTCAGATTGGTTTGGTATAGGCACATTTCAAGCAAAAGAGAGCGCATATTCACCACGT
GGAGACTTTGAATCCAACTCATCTGAAGATGCTCACTCTAGATATTTTGTGCTCCCAAGA
GCATTTGCTCTTGAACCTCCAAGTTGCCACACCACTTCTGACACTGACACTGAGAAACAC
TCGATTGAAAATACAGAGATCCAATTTATTGACAAGGCAGTTATTGAAGAAGATGCTCCA
AGCAAAATCATTGAAAAGGAGGTGGTAGCTGGTCCATCTTTTAAACCACCTGTGTTTGAT
TATGATGAGCATGAGGATGACTGGCTGAAAGACAACTCAGAGTTAGAGGGTTACACGGGT
TCTACTATTGTGAATGAGGAGGACGTTTCGTTTAGTGATCTTGAAGACGATACTGATTAT
ACAATGCCTATAAAACCCAAATCAGTGTCAATAAATCATAGCACAACACTTGATGTCTCG
TGA

Peptide Sequence

PEP ID

Solyc04g077600.3.1
PEP Infomation

BSD domain-containing family protein (AHRD V3.3 *** B9IBP6_POPTR)
Sequence

MSWLARSIANTLRLDDDDGEDGVEFNRNYQNDVVTRGANSSTASHAVDEDTSTYEEIDLE
ERSNNDNDYRSGSDVDDEDNQNRGVKEDLSELKETLTRQLWGVASFLAPPPPPLPPGKSD
LFGSEGDRIEDSGLSDGSEEEEGEYVGDGDSYMENLDEVEESESNAVGVTEEVLAFASNI
AHHPETWLDFPFADEEEFDDFELSEAQLRHAYAVERLTPRLAALRFELSPAHLSEGFFWM
VYFVLLYSRLKKQDAELLSTSQLVEARAMWMQELQKKTKPESDWFGIGTFQAKESAYSPR
GDFESNSSEDAHSRYFVLPRAFALEPPSCHTTSDTDTEKHSIENTEIQFIDKAVIEEDAP
SKIIEKEVVAGPSFKPPVFDYDEHEDDWLKDNSELEGYTGSTIVNEEDVSFSDLEDDTDY
TMPIKPKSVSINHSTTLDVS*

Transcript Sequence

Transcript ID

Solyc04g077600.3.1
Transcript Infomation

BSD domain-containing family protein (AHRD V3.3 *** B9IBP6_POPTR)
Sequence

GGAGGGAGTAATAAGATGACATGCGGCCCCAAATCCACGTCACAACAATACCAAACTTGA
AAGGAAAAAAAAAAGAGAAAATCAAAACCATCAATCACCACCTACTGCATTTTTTTTTTC
AAAATTGAAACAACTGTTCTTCCTTGTTATTCCTCGATCCAATCATATACGGTAGCTTAA
AGCTTAGCCATGTCATGGCTTGCTCGTTCCATAGCCAACACTCTCCGTCTCGACGACGAT
GACGGCGAAGACGGAGTAGAATTCAATCGCAACTATCAAAACGACGTCGTAACGCGTGGT
GCCAACTCATCAACTGCTTCTCACGCCGTTGACGAAGATACATCGACTTACGAAGAAATC
GATTTAGAAGAACGATCTAATAACGATAACGATTACCGTTCCGGTTCCGATGTTGATGAT
GAGGATAATCAGAATCGCGGTGTGAAGGAGGATTTGTCTGAACTGAAGGAAACCCTAACG
CGTCAATTATGGGGAGTGGCTTCATTTCTAGCTCCACCACCTCCGCCATTACCGCCGGGG
AAATCGGATCTGTTTGGTTCGGAAGGGGACCGGATTGAGGATTCCGGGTTGAGTGATGGA
TCCGAGGAGGAAGAGGGGGAATATGTTGGGGATGGAGATAGTTACATGGAGAATTTGGAT
GAAGTGGAGGAGAGTGAAAGTAATGCTGTTGGAGTGACAGAGGAAGTGTTAGCTTTTGCT
AGCAATATAGCTCATCATCCGGAGACTTGGTTGGATTTTCCGTTTGCTGATGAAGAAGAA
TTTGATGATTTTGAGCTCTCTGAGGCCCAACTGAGGCATGCATATGCTGTTGAACGTCTA
ACGCCGAGACTAGCTGCTCTCAGATTCGAACTTTCTCCTGCTCATTTGAGTGAAGGCTTC
TTTTGGATGGTCTATTTTGTTCTACTTTACTCAAGACTGAAAAAGCAGGACGCTGAGCTT
TTGTCTACATCTCAGCTTGTAGAGGCAAGGGCTATGTGGATGCAAGAGCTGCAAAAGAAA
ACAAAACCAGAGTCAGATTGGTTTGGTATAGGCACATTTCAAGCAAAAGAGAGCGCATAT
TCACCACGTGGAGACTTTGAATCCAACTCATCTGAAGATGCTCACTCTAGATATTTTGTG
CTCCCAAGAGCATTTGCTCTTGAACCTCCAAGTTGCCACACCACTTCTGACACTGACACT
GAGAAACACTCGATTGAAAATACAGAGATCCAATTTATTGACAAGGCAGTTATTGAAGAA
GATGCTCCAAGCAAAATCATTGAAAAGGAGGTGGTAGCTGGTCCATCTTTTAAACCACCT
GTGTTTGATTATGATGAGCATGAGGATGACTGGCTGAAAGACAACTCAGAGTTAGAGGGT
TACACGGGTTCTACTATTGTGAATGAGGAGGACGTTTCGTTTAGTGATCTTGAAGACGAT
ACTGATTATACAATGCCTATAAAACCCAAATCAGTGTCAATAAATCATAGCACAACACTT
GATGTCTCGTGAATTTATCTTCAGCTGCCAGGAGATACTTATTTACCTTAGGAGTGAACC
CACCTGCCTGTGATCTGGAGCTCCTAGCAAAAAATGCTGACTCTTAATTTCTCCATGGTT
CGTGCATGTTAGGCTGCATCTTTACCTGTTCTGGCTTGCAGAAGTTAGTACTTCATGATT
TTGCAATGACCACTTCTCGTGGTTGTCACTAGTTGGCGCTCTCAATGTTTAAGGTTGATC
ATCTCAGATTCTCATCATCTCTTGAACCTCACAATTCGATCCCAAGATGCTTGCTTACTT
GCACAGTATGGTGCAAGTCAATAAGCAACATTCATTTTATCCATCTCCTCCATTTTTTGT
GTGTTTTGAGGTCATAGCTTAATCATGACCTAGGGGAGGGCATGATAGCTAATTCTCGAA
ACAGTGTTTGTATTTGTACATATACATCAATGACCGTGCCCTGTAAGCTGTAACAAGGCA
ACGGATATAGTGTGGTGTCATATAAGGAAACGTGACATCTCTCCCTCTGTGAAAGGTATA
TTTTTTGTAATTGCATATCGAAGAATATCCCAATTTGGCATCTTCATCTTTCCTCAAATC
TTCTTGAAATGCATCTATTCTGTTATCATGCTTGCTCTATCAAGGGTGTAACTGTGAGTG
AGAAGAGAATGAAACTTTTGCTTTTATCTATTATTCCTTCAAATTGGTGAAAACTTAAGG
ATCACA