Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g076660.3.1
CDS Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09910.1)
Sequence	ATGGGTAATGGGCGTCGCTTCAAACGCATGATAAAATGCTTATTATGCGCGTGCGCTGGA CAAACAGGAGGTTGTTGTCATAGTGGAGGCTCTGGAACAATGTCCCCAATTGGAGTGAGA CTGTACATTCAGGATCGCCATGTGATGATGGATAATGGCCTAGTACAAGTCACGTTATCA AATCCAGATGGAATTGTCACTGGAATACGCTATAATGACGTTGATAATCTACTTGAAGGC CTTAACGATGAATCTAATAGAGGGTACTGGGACGTTGTCTGGAATTCTCCTGATGGTGGA AAAACTGGAGTATTTGAAGTGATCAAGGGTACTAATTTCAAGGTTATAAAGGAGACAGAC GATCAAGTAGAGATATCGTTTTCGCGACCATGGGATCCCTCCCTCCAAGGCAAACTTGTG CCTCTGAATATTGACAAAAGGTTTATTTTGCTCCGTGGCTGCTCTGGTTTCTACTCTTAT GCCATTTATGAGCATGTTGGTTCATCTGAGTGGCCTGCTTTCAGCATCGGTGAAACAAGA ATAGCATTCAAGCTCCGGAAAGACAAGTTTCACTATATGGCTGTGGCAGACAATAAGCAA AGATTCATGCCTCTACCAGATGACCGAATGCCTGCAAGATGCCAACGCCTTGCCTATGCA GAAGCGGTCCTTCTGAATAATCCTGTGGAGCCAGAGTTAAGAGGAGAGGTCGATGACAAG TACCAATATTCATGTGATAATAAAGACAACAAGGTCCACGGCTGGATATCTATGGATCCA CCAGTGGGATTCTGGCAAATTACTCCAAGTGATGAATTTCGATCCGGTGGACCTGTCAAA CAGAACCTCACATCTCATGTCGGTCCAACTACCTTAGCTATGTTTCTAAGCTCTCATTAC GCTGGGGATGATCTAACACCAAATTTTGCTCAAGGTGAAGCCTGGAAGAAAGTTTTTGGC CCCGTGTTTATATATCTCAATTCTGTTATGCCATGGGAAGATCCTGTTACTCTATGGGAT GATGCCAAGATACAGATGCAGCGTGAAGTTCAAAGTTGGCCTTACAGTTTTCCAGTATCT GAGGATTTTCCATCAGCAGATCAAAGAGGCAGTGTTAGCGGTAAACTTTTGGTTCAAGAC AAGTACATTAGTGATGATCATATACCTGCAAATGGCGCTTATGTCGGCCTTGCTCCGCCA GGAGAAGCTGGTTCCTGGCAAAAAGAATGCAAGGACTACCAATTTTGGGCTAAATCAGAC AACAATGGAAACTTCTCCATAAACAATATATGTCCTGGTGACTACAAACTTTATGCATGG GTACCTGGATTCATTGGGGACTATCTATATGAGACTCCTATTTCCATAACTCCAGGTTGT AGTATTGATGTGGACGAAATCGTATATCAGCCTCCAAGAGATGGCCCAACATTATGGGAA ATAGGCATTCCTGATCGTACTGCTGCTGAATTTTTTGTTCCTGAACCCAACCCGAAATTT GTCAACAAGCTTTTCGTCAATCATCCCGACAGGTTTAGGCAATATGGATTGTGGGATAGG TACTCCGAGCTATATCCAACGGATGATCTTGTGTATGTAACTGGAGAAAGTGACTATACC AAAGACTGGTTTTTCGCTCAGGTTCCAAGGAGAAAAGAGGACGGCTCATATCAAGGAACG ACATGGCAAATCAGATTTAAACTTGATTCAGTCAATCAAGGAGGCACGTATAAATTGCGT ATTGCAATTGCATCTGCAACTTTAGCTGAAGTACAGGTTCGGGTGAATAATCCAAGCACA AATCGACCTGTATTTTCAACCGGATTGATTGGAAGAGACAACTCAATTGCTAGACACGGA ATTCACGGATTATATTGGCTATACAATATAGACATACAGGGAAATCTGTTAGTACAAGGG GACAACACCATTTACTTAGGCCAACCAAGAAACCAAAGTCCTTTCCAGGGGATTATGTAT GACTATATTCGTCTCGAAGCTCCACCAAACTAA

Peptide Sequence

PEP ID	Solyc04g076660.3.1
PEP Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09910.1)
Sequence	MGNGRRFKRMIKCLLCACAGQTGGCCHSGGSGTMSPIGVRLYIQDRHVMMDNGLVQVTLS NPDGIVTGIRYNDVDNLLEGLNDESNRGYWDVVWNSPDGGKTGVFEVIKGTNFKVIKETD DQVEISFSRPWDPSLQGKLVPLNIDKRFILLRGCSGFYSYAIYEHVGSSEWPAFSIGETR IAFKLRKDKFHYMAVADNKQRFMPLPDDRMPARCQRLAYAEAVLLNNPVEPELRGEVDDK YQYSCDNKDNKVHGWISMDPPVGFWQITPSDEFRSGGPVKQNLTSHVGPTTLAMFLSSHY AGDDLTPNFAQGEAWKKVFGPVFIYLNSVMPWEDPVTLWDDAKIQMQREVQSWPYSFPVS EDFPSADQRGSVSGKLLVQDKYISDDHIPANGAYVGLAPPGEAGSWQKECKDYQFWAKSD NNGNFSINNICPGDYKLYAWVPGFIGDYLYETPISITPGCSIDVDEIVYQPPRDGPTLWE IGIPDRTAAEFFVPEPNPKFVNKLFVNHPDRFRQYGLWDRYSELYPTDDLVYVTGESDYT KDWFFAQVPRRKEDGSYQGTTWQIRFKLDSVNQGGTYKLRIAIASATLAEVQVRVNNPST NRPVFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNLLVQGDNTIYLGQPRNQSPFQGIMY DYIRLEAPPN*

Transcript Sequence

Transcript ID	Solyc04g076660.3.1
Transcript Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09910.1)
Sequence	ATAATGAAATAGAAACTAAAAATGAACGATACGAGCATTATTAGGAGTTTTAATAAAAGT TATTTTTACTTTTTGATAATCATATTCGTCGATACTTCAACAATGTAACATCACCTCATA ATTAAGAGATTTGAGATAATAATTATAGAAATGGAAAATAAAAATGAAATTATGAATCCC AATTCCCAAATGAAATTTGAAGTTCAAGCAGTAACAGTAACCAACTCCAAAACTGTCGTT CAATATCGTCTTGTACCAAAAAAATTCCAAACCCATATAATATATGATTTTATTTGTTAA ATCATGTGTTCAAGAACACACAAATTACCGATAAATCAGAGACACGCATAACTTGGTCGA TGTGCGGGCGGCAATTGAGCAGATTGATTGACGGCAGAAGCGGTGTGATACGGCGGGAGT TGGTGGCGCGTGGTTGAACGGGGAAAGTGCATATACAGTTACACAAATGGGTAATGGGCG TCGCTTCAAACGCATGATAAAATGCTTATTATGCGCGTGCGCTGGACAAACAGGAGGTTG TTGTCATAGTGGAGGCTCTGGAACAATGTCCCCAATTGGAGTGAGACTGTACATTCAGGA TCGCCATGTGATGATGGATAATGGCCTAGTACAAGTCACGTTATCAAATCCAGATGGAAT TGTCACTGGAATACGCTATAATGACGTTGATAATCTACTTGAAGGCCTTAACGATGAATC TAATAGAGGGTACTGGGACGTTGTCTGGAATTCTCCTGATGGTGGAAAAACTGGAGTATT TGAAGTGATCAAGGGTACTAATTTCAAGGTTATAAAGGAGACAGACGATCAAGTAGAGAT ATCGTTTTCGCGACCATGGGATCCCTCCCTCCAAGGCAAACTTGTGCCTCTGAATATTGA CAAAAGGTTTATTTTGCTCCGTGGCTGCTCTGGTTTCTACTCTTATGCCATTTATGAGCA TGTTGGTTCATCTGAGTGGCCTGCTTTCAGCATCGGTGAAACAAGAATAGCATTCAAGCT CCGGAAAGACAAGTTTCACTATATGGCTGTGGCAGACAATAAGCAAAGATTCATGCCTCT ACCAGATGACCGAATGCCTGCAAGATGCCAACGCCTTGCCTATGCAGAAGCGGTCCTTCT GAATAATCCTGTGGAGCCAGAGTTAAGAGGAGAGGTCGATGACAAGTACCAATATTCATG TGATAATAAAGACAACAAGGTCCACGGCTGGATATCTATGGATCCACCAGTGGGATTCTG GCAAATTACTCCAAGTGATGAATTTCGATCCGGTGGACCTGTCAAACAGAACCTCACATC TCATGTCGGTCCAACTACCTTAGCTATGTTTCTAAGCTCTCATTACGCTGGGGATGATCT AACACCAAATTTTGCTCAAGGTGAAGCCTGGAAGAAAGTTTTTGGCCCCGTGTTTATATA TCTCAATTCTGTTATGCCATGGGAAGATCCTGTTACTCTATGGGATGATGCCAAGATACA GATGCAGCGTGAAGTTCAAAGTTGGCCTTACAGTTTTCCAGTATCTGAGGATTTTCCATC AGCAGATCAAAGAGGCAGTGTTAGCGGTAAACTTTTGGTTCAAGACAAGTACATTAGTGA TGATCATATACCTGCAAATGGCGCTTATGTCGGCCTTGCTCCGCCAGGAGAAGCTGGTTC CTGGCAAAAAGAATGCAAGGACTACCAATTTTGGGCTAAATCAGACAACAATGGAAACTT CTCCATAAACAATATATGTCCTGGTGACTACAAACTTTATGCATGGGTACCTGGATTCAT TGGGGACTATCTATATGAGACTCCTATTTCCATAACTCCAGGTTGTAGTATTGATGTGGA CGAAATCGTATATCAGCCTCCAAGAGATGGCCCAACATTATGGGAAATAGGCATTCCTGA TCGTACTGCTGCTGAATTTTTTGTTCCTGAACCCAACCCGAAATTTGTCAACAAGCTTTT CGTCAATCATCCCGACAGGTTTAGGCAATATGGATTGTGGGATAGGTACTCCGAGCTATA TCCAACGGATGATCTTGTGTATGTAACTGGAGAAAGTGACTATACCAAAGACTGGTTTTT CGCTCAGGTTCCAAGGAGAAAAGAGGACGGCTCATATCAAGGAACGACATGGCAAATCAG ATTTAAACTTGATTCAGTCAATCAAGGAGGCACGTATAAATTGCGTATTGCAATTGCATC TGCAACTTTAGCTGAAGTACAGGTTCGGGTGAATAATCCAAGCACAAATCGACCTGTATT TTCAACCGGATTGATTGGAAGAGACAACTCAATTGCTAGACACGGAATTCACGGATTATA TTGGCTATACAATATAGACATACAGGGAAATCTGTTAGTACAAGGGGACAACACCATTTA CTTAGGCCAACCAAGAAACCAAAGTCCTTTCCAGGGGATTATGTATGACTATATTCGTCT CGAAGCTCCACCAAACTAAGCAGTGTTTCAGATTTCTAGTTCTAGAAATTGTTAACTGTT TGATTTATATTACCATTACCAGTTTAGCATAACTTCTGGTTTGTGAAGCAATAAAATTCC ACGTTTCGTTCAAGATGTTAACTGTTCCAATTACTTATGCAATCAACGATTGGGATTTAA CTGAGTGTTATACAGAGATTAAAGTATTTGAAGTCGGTGGAATGATAATATATGCACCTC