Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g076630.3.1
CDS Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09890.4)
Sequence	ATGATTGTACCAAAACATTCACAAATATCAAGTCCAGTTCTGCAGCTTCTTCAGCATGAG GACCAAGTGGTAATATATAATGGCATATTCCAACTCAGATTGACAAATCCAGGAGGAAAA ATCATTGGAATTCAATATAATGGGATTGAAAATTTGTTGGAACTCCACAACCCAATCTTG AATGGAGGGTTCTGGGACTTAAACTGGAGTGTACCTGGAACTTCTGGAACAAGAGGAAAA TTTGATGAGATTGAATGTAATAGTTCTAAAGTTATAGTGGAAACTGAAGAACAGATAGAG CTCTCCTTTATAAGGACATGGGATCCTTCACTTCAGGGCGACCAATCCCCGTTAACCATA GACATAAGGTACATAGTTCTTCGTGATTCGCCTGGTTTTTACTCTTATGCTATTTATGAA CACAAAGAGAATATGCCAGCATTCAACCTCAACGAAACCAGGATAGCTTTCATGCTCAGC TTCGAAAAGTTTCGGTACATGGCTATGGCAGATGATAGGCAAAGACCAATGCCCCTTCCT GAAGATCGGTTACCTCCAAGAGGGAAGGAATTGGCATATCCAGAAGCCGTCCTGCTAGTC GATCCTGTGGAGCCAGAATTCAAAGGAGAAGTTGATGACAAGTATCAGTATTCGTGTGAG AACAAAGATAACAAAGTCCATGGCTTCATTTGCTTAGATCCTCCTGTGGGATTCTGGCAA ATTACGCCAAGCAATGAGTTCAGAACAGGTGGACCTATCAAACAGGATCTTACTTCTCAT GTTAATCCAACAACTCTGGCTATGTTCATGAGCACTCATTATGGAGGCCAGGATTTCGTG ACTCAATTTGGATCAGGCGAACAATGGAAGAAAGTTTTTGGACCTGTTTTTATATATCTC AATTCTGTAGCAGACAAGAATGATGCACTTTCCCTATGGTATGACGCGAAAGAACAGATG CACAAAGAAGTCGACTGTTGGCCTTATAGTTTCGCGAGTTCAGAAGATTTTCCAAAAGCT GACCAAAGAGGTGCCATCCGTGGTAGATTATTAGTCAATGACAGGTGTATAAGCAAGGAG TATTTGTCTGCAAAGGGTGCTTTTGTTGGCCTAGCTCCACCTGGAGATGCTGGATCATTT CAAAGAGAATGCAAGGGCTACCAATTCTGGACGAACTCGGATGATGAAGGCTATTTCTCT ATCCAAAATGTTCGTCTGGGGGAATATAACCTCTATGCTTGGGTACCTGGCTTCATTGGA GATTACAAATATGAAAAATCCATAGCAATTACTGCAGCTTCTGATGTTGATATCGGTGAA CTTGTGTACGAGCCTCTAAGGAGTGGTCCTACATTGTGGGAGATCGGTATCCCTGATCGT TCTGCTGCAGAATTCTACGTTCCTGACCCTGATCCACAGTATATCAACAAACTTTACATA AACCAACCAGAAAACAGGTTTAGACAGTACGGATTATGGGAGAGATATGCAGATTTATAT CCAGATCAAGATTTGGTATTTACAATTGGAAGTAGTGACTATAAAAAAGATTGGTTCTAC GCTCAGGTGACAAGAAAAGTTGGTGATAAAGCCTATAAACCTACAACATGGCAAATTAAA TTCAATTTAGAAAGCATTGATCAGAATGGAAGTTACACACTCCGTATTGCGCTCTCATCT GCAACTTTCTCTATATTGGAGGTAAGGGTGAATGAGGAAGAAGCAAATCCACCACATTTC TCAAGTGGATTGATTGGAAGTGATAATACAATTGCCAGACATGGAGTCCATGGGCTGTAT TGGTTGTTTAATGTGGAGGTAGCTGCAGGACAACTCTTTCAAGGAGAGAACATCATATAT CTCAAACAAGCACGGAGCGTCAGTGCTCTCCATGGGATTATGTATGACTATATTCGTCTG GAAGCTCCTCCTCTTTCCACCACGCGTTATTAG

Peptide Sequence

PEP ID	Solyc04g076630.3.1
PEP Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09890.4)
Sequence	MIVPKHSQISSPVLQLLQHEDQVVIYNGIFQLRLTNPGGKIIGIQYNGIENLLELHNPIL NGGFWDLNWSVPGTSGTRGKFDEIECNSSKVIVETEEQIELSFIRTWDPSLQGDQSPLTI DIRYIVLRDSPGFYSYAIYEHKENMPAFNLNETRIAFMLSFEKFRYMAMADDRQRPMPLP EDRLPPRGKELAYPEAVLLVDPVEPEFKGEVDDKYQYSCENKDNKVHGFICLDPPVGFWQ ITPSNEFRTGGPIKQDLTSHVNPTTLAMFMSTHYGGQDFVTQFGSGEQWKKVFGPVFIYL NSVADKNDALSLWYDAKEQMHKEVDCWPYSFASSEDFPKADQRGAIRGRLLVNDRCISKE YLSAKGAFVGLAPPGDAGSFQRECKGYQFWTNSDDEGYFSIQNVRLGEYNLYAWVPGFIG DYKYEKSIAITAASDVDIGELVYEPLRSGPTLWEIGIPDRSAAEFYVPDPDPQYINKLYI NQPENRFRQYGLWERYADLYPDQDLVFTIGSSDYKKDWFYAQVTRKVGDKAYKPTTWQIK FNLESIDQNGSYTLRIALSSATFSILEVRVNEEEANPPHFSSGLIGSDNTIARHGVHGLY WLFNVEVAAGQLFQGENIIYLKQARSVSALHGIMYDYIRLEAPPLSTTRY*

Transcript Sequence

Transcript ID	Solyc04g076630.3.1
Transcript Infomation	Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09890.4)
Sequence	TTTACTGTTAAATTAGAACTCAAATTTTAAAAACTAGCTAAAAGAGAAAAGGATTGTTCA TGTGCCGTGTGAGTTGTGATTGTATAATTTGTCAAGACAAAATTGGCTTGTAAATAAGAG TAGCTTTGGCGTAAAGACACTCAAACATGAACAAATTAAGGAAAGAAAACGAATCCTTTA CTAGGAGTAGGGGAGGATGGTAAATTTATACGTCTCAAATGAGGTTAAATTTAAATAGGT CAAGATAATTTAAGCTTAATAAATTGACAGGTTATATTAACCCTTTGAAAAATAACTAGG GGTGAAATAAACTAAAATGCAAATCAAAATTCAGCCTGTTAATTTTTACTATATCATGTT TCAATTTGGATTAGATATCACTCCAAATTTTGATAGTCTAAAATGAGCTAACTAATAAAT GAACCAGTTACTAATGAGCACCGAATTAAAATAGACGGGTCAATAATTCATTTAAACTTG GCATAGGCAAATTATGATTTCATTGGCTAATTTTGTCATATATATATATATTCCTTATTC ACATAAAGAAATTCTAAGTTTCTTATACACATTGAACTTGTATATTTGTGCAGGTTTAGT TCAATATTAAATAAATCTTTCTAGCTGCTCCAAGTTCTGTTTTGCATTATGATTGTACCA AAACATTCACAAATATCAAGTCCAGTTCTGCAGCTTCTTCAGCATGAGGACCAAGTGGTA ATATATAATGGCATATTCCAACTCAGATTGACAAATCCAGGAGGAAAAATCATTGGAATT CAATATAATGGGATTGAAAATTTGTTGGAACTCCACAACCCAATCTTGAATGGAGGGTTC TGGGACTTAAACTGGAGTGTACCTGGAACTTCTGGAACAAGAGGAAAATTTGATGAGATT GAATGTAATAGTTCTAAAGTTATAGTGGAAACTGAAGAACAGATAGAGCTCTCCTTTATA AGGACATGGGATCCTTCACTTCAGGGCGACCAATCCCCGTTAACCATAGACATAAGGTAC ATAGTTCTTCGTGATTCGCCTGGTTTTTACTCTTATGCTATTTATGAACACAAAGAGAAT ATGCCAGCATTCAACCTCAACGAAACCAGGATAGCTTTCATGCTCAGCTTCGAAAAGTTT CGGTACATGGCTATGGCAGATGATAGGCAAAGACCAATGCCCCTTCCTGAAGATCGGTTA CCTCCAAGAGGGAAGGAATTGGCATATCCAGAAGCCGTCCTGCTAGTCGATCCTGTGGAG CCAGAATTCAAAGGAGAAGTTGATGACAAGTATCAGTATTCGTGTGAGAACAAAGATAAC AAAGTCCATGGCTTCATTTGCTTAGATCCTCCTGTGGGATTCTGGCAAATTACGCCAAGC AATGAGTTCAGAACAGGTGGACCTATCAAACAGGATCTTACTTCTCATGTTAATCCAACA ACTCTGGCTATGTTCATGAGCACTCATTATGGAGGCCAGGATTTCGTGACTCAATTTGGA TCAGGCGAACAATGGAAGAAAGTTTTTGGACCTGTTTTTATATATCTCAATTCTGTAGCA GACAAGAATGATGCACTTTCCCTATGGTATGACGCGAAAGAACAGATGCACAAAGAAGTC GACTGTTGGCCTTATAGTTTCGCGAGTTCAGAAGATTTTCCAAAAGCTGACCAAAGAGGT GCCATCCGTGGTAGATTATTAGTCAATGACAGGTGTATAAGCAAGGAGTATTTGTCTGCA AAGGGTGCTTTTGTTGGCCTAGCTCCACCTGGAGATGCTGGATCATTTCAAAGAGAATGC AAGGGCTACCAATTCTGGACGAACTCGGATGATGAAGGCTATTTCTCTATCCAAAATGTT CGTCTGGGGGAATATAACCTCTATGCTTGGGTACCTGGCTTCATTGGAGATTACAAATAT GAAAAATCCATAGCAATTACTGCAGCTTCTGATGTTGATATCGGTGAACTTGTGTACGAG CCTCTAAGGAGTGGTCCTACATTGTGGGAGATCGGTATCCCTGATCGTTCTGCTGCAGAA TTCTACGTTCCTGACCCTGATCCACAGTATATCAACAAACTTTACATAAACCAACCAGAA AACAGGTTTAGACAGTACGGATTATGGGAGAGATATGCAGATTTATATCCAGATCAAGAT TTGGTATTTACAATTGGAAGTAGTGACTATAAAAAAGATTGGTTCTACGCTCAGGTGACA AGAAAAGTTGGTGATAAAGCCTATAAACCTACAACATGGCAAATTAAATTCAATTTAGAA AGCATTGATCAGAATGGAAGTTACACACTCCGTATTGCGCTCTCATCTGCAACTTTCTCT ATATTGGAGGTAAGGGTGAATGAGGAAGAAGCAAATCCACCACATTTCTCAAGTGGATTG ATTGGAAGTGATAATACAATTGCCAGACATGGAGTCCATGGGCTGTATTGGTTGTTTAAT GTGGAGGTAGCTGCAGGACAACTCTTTCAAGGAGAGAACATCATATATCTCAAACAAGCA CGGAGCGTCAGTGCTCTCCATGGGATTATGTATGACTATATTCGTCTGGAAGCTCCTCCT CTTTCCACCACGCGTTATTAGTACTTTTAGTGGCACGGTCAAGAACAGTTCTTGTGTGTT CGATAAACTAATTGCTTTCGTTGTAAACTATGTATAAAATAAGATCATTCTCATTGTGAA CCTGTAGACTTTGGATCCTAATTTCAGTCTCTAGGTACGGATGATTTACAGAAATGCACC CATTGAAGCTTGTGACTTTGTGTATTCATTGTTTCAATAAATAGTAGAATGATATTTGAA GACTTGAAAAATACAATCCAGAGCAG