Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g076190.1.1
CDS Infomation	Aspartic proteinase nepenthesin-1 (AHRD V3.3 *** W9S5L1_9ROSA)
Sequence	ATGGCTTTGGCCATTGCTACATTCCTCTTCATCACTCTTCTTTCAACAACAAAAACTTTA GCTTTTGATTCATGTCCATCTAATGAACAACTTTCAGTCATTCCCATTTATGGCAAATGC TCACCTTTCAACACACCAAAACCTACATCTTGGGAAAACACACTTATCAACATGGCCTCT AAAGATCCACAAAGACTTTCTTATTTGTCTAGTTTAGTAGCCCAAAAGCCTAATTCAGCC CCTATTGCTTCAGGCCAACAAGTATTCAACATTGGTAACTATGTTGTTCGGGCTAAAATC GGTACCCCCGGCCAGCTAATGTTTATGGTCCTGGATACCAGTAGTGACACTGCATGGGTT CCATGCAGTGGCTGTACTGGCTGTACCTCTAGTGTATTTACTCCCAATATCTCGTCGACT TATGGGTCGATGGGTTGCTCTGTACCCGAATGCACACAGGTTAAGGGGCAATCTTGCCCC GCTGCTGGTGCACCGGGTGCTTGTTTTTTCAACCAATCCTATGGTGGAGCTTCGTCGTTC TACGCCACGCTGTCACGTGATTCACTTAGACTAGGTGCTGATGTTATACCGAATTATTCA TTCGGTTGCATCAGTGCTGTGTCCGGGAGCTCAATCCCCCCCCAAGGGTTATTGGGCTTG GGTAGGGGCTCCATGTCACTACTCTCACAATCCATGTCACTCTACTCTGGTGTATTCTCA TACTGTTTACCGAGTTTCAAATCTTATTATTTCTCTGGATCACTCAAACTCGGTCCATTG GGTCAACCGAAGAACATTAGAACCACCCCACTTCTTAAGAACCCGCACAGACCCTCTCTG TACTACGTGAACCTAACCGGCATAAGTGTGGGTCGCGTCCTGGTCCCGATAGCTCCTGAG CTTCTAGCATTTGACCCGAATACCGGTGCGGGTACTATAATCGACTCGGGTACGGTTATA ACCCGATTCGTTCAGCCAATTTATAATGCAATTAGGGATGAATTTAGGAATCAAGTGAAA GGACCATTTACCTCATTGGGTGCATTTGACACATGTTTTGCATCAACAAATGAAGCAGTG GCACCAGCTATTATACTTCACTTTACAGGGATGGATTTGGTGTTGCCAATGGAGAACAGT TTGATTCATAGTAGTGCAAGTCCTTTGGCATGTCTAGCAATGGCAGCAGCACCAACAAAT GTGAACTCTGTGTTGAATGTTATAGCCAATTTGCAGCAGCAGAACCTGAGGATTCTGTTT GACACAGCTAATTCGCGTTTGGGAATTGCTCGCGAACTTTGTAACTAG

Peptide Sequence

PEP ID	Solyc04g076190.1.1
PEP Infomation	Aspartic proteinase nepenthesin-1 (AHRD V3.3 *** W9S5L1_9ROSA)
Sequence	MALAIATFLFITLLSTTKTLAFDSCPSNEQLSVIPIYGKCSPFNTPKPTSWENTLINMAS KDPQRLSYLSSLVAQKPNSAPIASGQQVFNIGNYVVRAKIGTPGQLMFMVLDTSSDTAWV PCSGCTGCTSSVFTPNISSTYGSMGCSVPECTQVKGQSCPAAGAPGACFFNQSYGGASSF YATLSRDSLRLGADVIPNYSFGCISAVSGSSIPPQGLLGLGRGSMSLLSQSMSLYSGVFS YCLPSFKSYYFSGSLKLGPLGQPKNIRTTPLLKNPHRPSLYYVNLTGISVGRVLVPIAPE LLAFDPNTGAGTIIDSGTVITRFVQPIYNAIRDEFRNQVKGPFTSLGAFDTCFASTNEAV APAIILHFTGMDLVLPMENSLIHSSASPLACLAMAAAPTNVNSVLNVIANLQQQNLRILF DTANSRLGIARELCN*

Transcript Sequence

Transcript ID	Solyc04g076190.1.1
Transcript Infomation	Aspartic proteinase nepenthesin-1 (AHRD V3.3 *** W9S5L1_9ROSA)
Sequence	ATGGCTTTGGCCATTGCTACATTCCTCTTCATCACTCTTCTTTCAACAACAAAAACTTTA GCTTTTGATTCATGTCCATCTAATGAACAACTTTCAGTCATTCCCATTTATGGCAAATGC TCACCTTTCAACACACCAAAACCTACATCTTGGGAAAACACACTTATCAACATGGCCTCT AAAGATCCACAAAGACTTTCTTATTTGTCTAGTTTAGTAGCCCAAAAGCCTAATTCAGCC CCTATTGCTTCAGGCCAACAAGTATTCAACATTGGTAACTATGTTGTTCGGGCTAAAATC GGTACCCCCGGCCAGCTAATGTTTATGGTCCTGGATACCAGTAGTGACACTGCATGGGTT CCATGCAGTGGCTGTACTGGCTGTACCTCTAGTGTATTTACTCCCAATATCTCGTCGACT TATGGGTCGATGGGTTGCTCTGTACCCGAATGCACACAGGTTAAGGGGCAATCTTGCCCC GCTGCTGGTGCACCGGGTGCTTGTTTTTTCAACCAATCCTATGGTGGAGCTTCGTCGTTC TACGCCACGCTGTCACGTGATTCACTTAGACTAGGTGCTGATGTTATACCGAATTATTCA TTCGGTTGCATCAGTGCTGTGTCCGGGAGCTCAATCCCCCCCCAAGGGTTATTGGGCTTG GGTAGGGGCTCCATGTCACTACTCTCACAATCCATGTCACTCTACTCTGGTGTATTCTCA TACTGTTTACCGAGTTTCAAATCTTATTATTTCTCTGGATCACTCAAACTCGGTCCATTG GGTCAACCGAAGAACATTAGAACCACCCCACTTCTTAAGAACCCGCACAGACCCTCTCTG TACTACGTGAACCTAACCGGCATAAGTGTGGGTCGCGTCCTGGTCCCGATAGCTCCTGAG CTTCTAGCATTTGACCCGAATACCGGTGCGGGTACTATAATCGACTCGGGTACGGTTATA ACCCGATTCGTTCAGCCAATTTATAATGCAATTAGGGATGAATTTAGGAATCAAGTGAAA GGACCATTTACCTCATTGGGTGCATTTGACACATGTTTTGCATCAACAAATGAAGCAGTG GCACCAGCTATTATACTTCACTTTACAGGGATGGATTTGGTGTTGCCAATGGAGAACAGT TTGATTCATAGTAGTGCAAGTCCTTTGGCATGTCTAGCAATGGCAGCAGCACCAACAAAT GTGAACTCTGTGTTGAATGTTATAGCCAATTTGCAGCAGCAGAACCTGAGGATTCTGTTT GACACAGCTAATTCGCGTTTGGGAATTGCTCGCGAACTTTGTAACTAG