Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g072180.2.1
CDS Infomation

Sphingoid base hydroxylase 2 (AHRD V3.3 *** A0A061FL55_THECC)
Sequence

ATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTG
GTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTT
CATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGG
GTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGTTAACTTGT
AAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATC
ATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCATCAG
AACAAGTTCTTATACCGCCATATTCACTCCCAGCATCATCGGTTGGTCGTGCCTTACGCA
ATTGGTGCCCTTTATAACCACCCACTTGAAGGTCTCCTCCTGGATACTTTCGGTGGTGCT
CTTTCGTTTCTTGTTGCTGGAATGACTGCACGTACTGCTGTAATCTTTTTCTGTTTTGCT
GTGGTCAAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTG
TTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTC
AATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATAC
AGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAG

Peptide Sequence

PEP ID

Solyc04g072180.2.1
PEP Infomation

Sphingoid base hydroxylase 2 (AHRD V3.3 *** A0A061FL55_THECC)
Sequence

MVFWEGYVSDEVMGTFAPIVVYWLYAGFYQLLPPMDKYRLHTRKEENAKNLVPLASVVKG
VLLQQFFQATVAHLLFLLTCKVTTSGTVVQPSIPVQIVQIIIAMLVMDTWQYFVHRYMHQ
NKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTFGGALSFLVAGMTARTAVIFFCFA
VVKTVDDHCGLWLPGNIFHLFFHNNTAYHDIHHQLQGTKFNYSQPFFSIWDKLLGTYRPY
RLVKRPEGGFEAQLMKD*

Transcript Sequence

Transcript ID

Solyc04g072180.2.1
Transcript Infomation

Sphingoid base hydroxylase 2 (AHRD V3.3 *** A0A061FL55_THECC)
Sequence

ATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTG
GTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTT
CATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGG
GTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGTTAACTTGT
AAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATC
ATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCATCAG
AACAAGTTCTTATACCGCCATATTCACTCCCAGCATCATCGGTTGGTCGTGCCTTACGCA
ATTGGTGCCCTTTATAACCACCCACTTGAAGGTCTCCTCCTGGATACTTTCGGTGGTGCT
CTTTCGTTTCTTGTTGCTGGAATGACTGCACGTACTGCTGTAATCTTTTTCTGTTTTGCT
GTGGTCAAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTG
TTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTC
AATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATAC
AGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTT
TTGATCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGA
GGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGC
TGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTT
GTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATA
CATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAA
GAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGT
AAAATTTCATGGTCATTGAAGTTATTTCAATCACCCTTGTGCTATTTTGTTTGAAGCCTT
TGTGATACATCATACACTTTATAAAGACTTGTGAAGTTTTCTCTTTAGTTCTTCTTTGAT
AAAATCTCATTTCTTCTACTACTTGAGGAGCCTGCCTTAGCACCAATCAAACATTCAAAA
TATTGCTACTTGACAGTGGACACAACATAACAATTGCTTAAGAAAATGATTCAACTACTG
CATACATGTAGAGCCAAAAGTACATTGAATCAACAGCCAAACAAATGTCAAAGTTAATTT
TTCTCTAAAGCTCCTCTTTTCATGACATTATACATAACAGATTCCTCATCACAACTTTCT
GCAAGAGGAAGAAGCTCCTTGCTTCGGACTTCTGAAAATGAGTCGTACCTCTTCTGAAAG
CAAGTTCTGGTATAATGGTGGAGTTTCTCCTTTGGATACCTGTAGGTCGCGACTTCTACA
GTCTCTAAAGCTGAAATGCCAAGTATGTTGCATACAATATACGTCCAATCTCCCTCATCT
ATCAAACTCGGGGAGCACTTTGTACAAGGTGAGTCTTTGTAGGCATACATTCATATGGTT
TTCTGTGCCATGTCAAACTAATGTGCTTTACACACATATTTAGATCAACCTCACCAGTAT
TCTTTACAAGAACAAGCCCCATCTTTGAATCTGTGAAAACGAGTCCTGTCCCTCACAATA
ATCTCTCGCTCGTATATCTTTGATATGAGCTTAATGACAACATGACAATCCCCACATATT
CTAAGATTCTTATTCACACTTATACAAGTCCTATCAGGTGTACTAATCAAACCAAAAGCT
ACTGCCAGTTTCTCACTATGATAAAACAGTGCATTCTCCTTCTCCTCCGGTCCAATATCA
TGAAACACATAATTAGTTTCTGCCACATACCCGTATTCCCTAATTCTCAACGAAACCTCA
TCAAGCTTCCAGTAAATCTCATTCCACTTTGGATGGTTTTTATCACCATTCATAAATTTG
TATATCGTTCCACCAACTTCAATGTAGCTAAAGCCTGGTACCTTCTTTACATCCTGACCT
TTCATGGCTTCCCTTACTCTTCTCACATCATGCCACCTCCCTTGTGCTGCATAAAGATTG
GATAGCAACACGAAATCCCCACAATGATTTGATCCCATTTCAACGAGCTTCTTGGATGCT
ATCTCTGCCATTTCCACATTACCATAAGTCTTGGAAGCCCCTAAGAGAGTTTGCCATAAA
ACTACATCAGGAAATGTAGGCATTGACTGTACAATTTTATAAGCTGCCTCCAACCGCCCA
GCTCTTCCCAACAAGTCCACCATACTACCATAGTGCTTCACATTCTTACTCACTCCACAT
CTGTCCATGTCATCAAACAATTTCATTCCCTCTTCCACCATTCCTGCATGGTTACAAGCA
CAGATTGCAGCTAAGTAACTCACACTATCTGGGTCGATCCCAGCTTGGCCCATCCTCTCG
AAAAGCTCAAGTGCTTGCTCTCCATCTCCATATATCGCAAGAGCCATAATCATGGTATTC
CACGTGACACGAGTCCTCAAGCATTTCATTTCACTGAAAACTTCATAAGCTCTTCCAACA
ACACCACATTTCGCATACATATCAATAACCGCATTACAGACAATCACTTTGCAATCAAGA
TTCTTACTTTTGATATACTCGTGAACAAGTTCCCCTTCTTTATTCGCCCCCAACTGCGAA
CAAGCAGAGAGAGCACCAAGCACAGTAACCTCATTTGGTTCCATATCCTCCTCTCTCATT
TTCTTAAAAAGCAACAAAGCTTCCGTGGGTCGATTCCCTTGAGCTAACCCAGCAATTAAT
GCATTCCAACTCGCAATATCTCTAACACCCATTTCATCAAACACCTTGTATGCATAATCC
AAATCACCAGATTTCGAGTACGCATCCAGTAAAGTAGTCCGCAACAACACATCTGCATCA
AACCCAAATCGAATCACATGGGTATGAAGTTGTGGGGTTTCGGAACGGGCCAATGCACGA
GCACATGCTTTGAGAGTGAAGGAGCAGGTGAGAGCATCAGGCTTACAAAGGGAACGAGAC
ATTGAGACATAAAAAGTGAGAGCATCAATGGGCTTGTGGCTTTGAGCAAGGCCGCGAATA
ATGGCGTTCCATTCATTCTTGAATGGGGAAGTAATGTGGCGGAAGATATGGGTGGCGTAA
GGGAGGTTTCCGGCGGAAGAGACGGCGCAGAAATCCAAGAATTTGGCGCGGCAAGTGTAG
AATTGAAAATTGCCGGTGATAATAAGATGGGCTTGGAGTTGTTTGAGTTTGGAAAAACAA
GTACATTTTGACAATAACGAATCAACGTACGCCATACCACACTAATGTTGCTTGGGGCAC
TTTTATATGGGAACACTTCGAGTT