Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g072050.3.1
CDS Infomation

Transmembrane protein, putative (AHRD V3.3 *** I3SNC1_MEDTR)
Sequence

ATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATT
ACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTT
ACCCCGTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGGTCT
TGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTA
TGTTTGGGAAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACT
CAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAAGACTGAA
ACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGC
TGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGA
GATGTTTTTACTCCGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCT
CTCTCGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATA
CTTATAATTTGTTCTGGCAGCATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAAT
CTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAGGGCAGAAAAA
GGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTT
TGTGGTTGA

Peptide Sequence

PEP ID

Solyc04g072050.3.1
PEP Infomation

Transmembrane protein, putative (AHRD V3.3 *** I3SNC1_MEDTR)
Sequence

MAATLAIALKSLFSVLGCLITATVIYTVATDGLPFRIELLTPWMAATLIDFYIHIFVIWS
WVVYKESNWITAILWVVLLVCLGSIATCGYIVLQFLKLSTQESLQDPIYFVLLRRQEKTE
TEQQKKCSLLTARILFPALGCLMLGTLIYTIVTDGSPFRRDVFTPWVIATVIDFYVGVVA
LSVWVAYKESSWLSAALWIILIICSGSISTCAYIALQLFNLSSQDPVYLVLFSSRNRAEK
GYEVTSRTESIGEGQLRKKLCG*

Transcript Sequence

Transcript ID

Solyc04g072050.3.1
Transcript Infomation

Transmembrane protein, putative (AHRD V3.3 *** I3SNC1_MEDTR)
Sequence

AAATTTCCCCACCCATTTAAGGCTGATAATGGATCGGATCGGGTTGAAAATTAACCCGAA
AAAATTCATCTCCCGCCCCGCATATTATGTTTTGTTTGGATTTCATTAGAATTACAATTA
CAAGAGATTTTGAAGTTTGAGAAAGTGACACAAAAATTCAGTGGACGTGGAGCAATGGCC
TTCTCACATTTTCTCCCCTTTTCAGTACGCTTCCTTTCTCTCTTCTGCAACACTCGAAGA
CGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCT
CTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTC
CTTTCCGCATAGAACTCCTTACCCCGTGGATGGCAGCTACCCTGATAGATTTCTACATCC
ACATATTTGTTATATGGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATAC
TTTGGGTGGTCTTGCTAGTATGTTTGGGAAGCATTGCTACATGTGGCTACATCGTGTTGC
AATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTAC
GACGTCAGGAAAAGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAA
TTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTG
ATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTGGGTGATAGCAACAGTGATTGATT
TCTATGTTGGTGTTGTGGCTCTCTCGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGA
GTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGCATCAGCACATGTGCCTATA
TAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCA
GCCGCAACAGGGCAGAAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGG
GTCAATTGAGGAAGAAGCTTTGTGGTTGATTTGGTTTTGATTTCATAATTGGACTCTTTC
ATCATTTATATCTTTGTAATAAGTTGTGTTAAATAATAAACTTCTAATGTACATGTCTCT
GTAAAAGAAATGTGATAATTATTTTGTAGGGAAATAATATTTTGTTATTATTGATCGTAT
GGTATCCATAAAAACAAGAAAAATATGTACAAAAAAAAAAAAAAAAAACCTCAATAATGG
CCTATAAACATATTCTATGAAACATTGAAGACTCTAAATGCTCCACTCATTATACGACAT
AGGCTTATCGATTTATCATGACTTTTACATTCTACATTGTTAATGTACATGTTTTAACAT
AAATCTTTTGAGCGGAGAATGTGAACTGGTTCAGCTGAATCATCAACATGTAACAAGTCG
TCTGAGGCACCTAAGAGTTCGGGCTTTCTCAACCAGTACTGCTTGAACCTTCCCCTCGCG
TACTCCATGTAGTCAAACTCGATATTGTTAACATATGCCTGTCAGAAGAAACAACAATTA
TAACACAGAAAGAGAAAAATGCACGGTGAAATGTAGTGATAAAGAGAGGAAGTGTGTAAA
AGGCATACCGAGATGACTCCCCACAATCCCCAGAACAAGTGATTTGCAAGCGTATATTTC
TCTGATTCGTCAACAAGTTTCTTTACTTCCTCATCACTTGGTTGATTGCCTGCACTTGTC
AATGGGATTCAAAGCTCAATAAGATAATTCTGCTGTGTCGGTGCACAAAGCAGACACACA
ACGACTGCTTAAATCTTAGGTCTGTTTATCATTGACCATATTAATTGGACAAGGGAACAT
GTTTGGTTTTAGTTGAGGCTATCAGGACAATTCATTAATACATCGGGTCCTACAAATAAC
AACGACTAGTACTATTTTTCAATTCCAAGTTAGTTGAGAATCAGGTTCTAAATATCTGAA
GTAATTAAAGTCTTGGCATCTTGGTCCCATCACCAAATAAAACTGATCTTTCTGCTGCCT
TAAAGGTCAATTATCTTATTATTCGATGCCTATCCAAATTGAACGATAAATGTTATGTGG
TCTCGAAGGGTCAGAACTTATTTATCGTGTGCAAGAAATCAACCGTATGCTTTGGACAGA
GAGGTGCAGACAACAGTAAAAGATGTTCAAACTTTTCAAGCTTACCTGATGAACTGAGAT
ATGCACGTACAAATCGCTGTCGCTCCTCAAAATCTGTCGGAAATTCAAAATTCAAAAAAG
AGTAAATAAACCGCGCATGTCAGGGTTAGAGTAGGGACATTAGAGTAGCAAACAAGCATG
ATCTCTGTGTTCTCTTGTTGCAGCTTATATTT