Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g071280.2.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GR08_POPTR)
Sequence

ATGGTGGTTGTGATTTCTACTCGAATAGATAAATTTGGCCGAGTTTTGCGAGTTGTTGGA
CAGCGCTTTTTGTCAAGCAGTTTGGTTCATTCTGTTTCAGAAACAAAAGATGAAGTTGAA
ACAATTGCTAGAATCATCAATGACCACCCTTTTCCTGTTCAGCCTCTGCAACCAATGCTT
AAACGTCATGTCTCTTCGAGTATCCTGTCTACCATGTTTGTTGAAAATGTCATTGGTCGC
CTATTTGCGGCACATGCAAATGGTCTTAAAGCATATGAATTTTTTGAGTTCTGCCTCAAC
CATCCTGAGTATAGTCCAACCTCTGATGCATTTGAGAAGACACTTCACGTACTAGCAAGA
ATGCGATACTTTGATAAGGGTTGGGAACTAATGAAGAAAATTCAACAGCTACAACCGTCG
TTGCTCACCCTTAAGTCATTGAGCATCATGCTATCAAGAATAGCAAAATACCAGTCCTAT
GAAGATACCCTTGAAGCATTTGAGAAGATGGAGCAGCATTTATTCCCTGGGAAGAAATTT
GGCACCGAAGAGTTCAATATTCTTCTTCGAGCATTTTGCTCACAAAGGCAGATGAAAGAA
GCTCGTTCAGTATTCAACAAACTCCATTCTAGGTTCCCACCTGATACCAAGACAATGAAT
ATCTTGCTTTTGGGGTTCAAGGAATCAGGGGATATTACTGCCGTAGAGTTATTTTACCAT
GAGATGGTTAAAAGAGGTTTTAAGCTTAATTCTGTAACATACAGTATAAGAATTGATGCA
TACTGCAAGAAAGGTCGCTTTGGTGATGCTTTGAAGCTGTTTGAAGAAATGGATAGGGTA
AATTGCTTGCCTACAGTTGAAACAATAACAACTTTGATTCATGGAGCAGGGATTGCTCGT
AATATAAGTAAAGCTAAGGAACTATTCAATGAACTATTCAAGAGAAATTTTCAACCAGAC
ACTGGAGCCTATAATGCCCTTTTGAGTTCTCTTACCAAATCCAGGGATGTCAAATCTGCA
GCAGTCTTAATGGATGAGATGGAAGAGAAAAATATTGAGTTCGACAATGTAACTTACCAC
ACTATGTTGTGGGGATTGATAAGATCAAATGATGTTGGTGGTGTCATTGATCTTTACGAA
AGGATGGTTGACAAAAATTTCTTGCCCAAGGCACGTACTGTTGTGATGCTGATGAAATTC
TTTTGTGAAAACCAGAGAGTTGATCTGGGTTTGAGCTTATGGAATTACCTGATGAATAAA
GGGCACTGTCCACACTGCCATTCTTTAGAAATTCTGGTCACAGGATTGTGCTCTCGTGGG
AGAGTTGAAGAAGCATTTGAGTGCTCTGAGCAAATGTTGAAGAGGGGTAGGCACATGAGC
GAGCTAGTGTTTCAGATGTTGAAGAGGTTTTTCTTACAGCTGGGAGAGGAGGAAAAGTTA
CAGAAGCTCTACCAAATGACAAAGAGATTAGAAATGATATTGCCTCCTAATGGACAAACT
GTTGTTAGTTGCTTGATTTACTTGATTCTACACATAGCTGAGATATTTCTTTGGAATTTG
CGTAACAATGATATTTTTATGATCTTTCCATTTGTTTGGGTTCAATTTTTTGTTGCCGTT
ACCTATAGCTGTTTCATGACCACTGAAACTGTCTATCGGATTTTTTTCTGCAAAGAGAGA
CTGTGTTTCTATTGTGTTGTTTAA

Peptide Sequence

PEP ID

Solyc04g071280.2.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GR08_POPTR)
Sequence

MVVVISTRIDKFGRVLRVVGQRFLSSSLVHSVSETKDEVETIARIINDHPFPVQPLQPML
KRHVSSSILSTMFVENVIGRLFAAHANGLKAYEFFEFCLNHPEYSPTSDAFEKTLHVLAR
MRYFDKGWELMKKIQQLQPSLLTLKSLSIMLSRIAKYQSYEDTLEAFEKMEQHLFPGKKF
GTEEFNILLRAFCSQRQMKEARSVFNKLHSRFPPDTKTMNILLLGFKESGDITAVELFYH
EMVKRGFKLNSVTYSIRIDAYCKKGRFGDALKLFEEMDRVNCLPTVETITTLIHGAGIAR
NISKAKELFNELFKRNFQPDTGAYNALLSSLTKSRDVKSAAVLMDEMEEKNIEFDNVTYH
TMLWGLIRSNDVGGVIDLYERMVDKNFLPKARTVVMLMKFFCENQRVDLGLSLWNYLMNK
GHCPHCHSLEILVTGLCSRGRVEEAFECSEQMLKRGRHMSELVFQMLKRFFLQLGEEEKL
QKLYQMTKRLEMILPPNGQTVVSCLIYLILHIAEIFLWNLRNNDIFMIFPFVWVQFFVAV
TYSCFMTTETVYRIFFCKERLCFYCVV*

Transcript Sequence

Transcript ID

Solyc04g071280.2.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GR08_POPTR)
Sequence

AACTTTGACTTTTTGCTTAAAATGGTGGTTGTGATTTCTACTCGAATAGATAAATTTGGC
CGAGTTTTGCGAGTTGTTGGACAGCGCTTTTTGTCAAGCAGTTTGGTTCATTCTGTTTCA
GAAACAAAAGATGAAGTTGAAACAATTGCTAGAATCATCAATGACCACCCTTTTCCTGTT
CAGCCTCTGCAACCAATGCTTAAACGTCATGTCTCTTCGAGTATCCTGTCTACCATGTTT
GTTGAAAATGTCATTGGTCGCCTATTTGCGGCACATGCAAATGGTCTTAAAGCATATGAA
TTTTTTGAGTTCTGCCTCAACCATCCTGAGTATAGTCCAACCTCTGATGCATTTGAGAAG
ACACTTCACGTACTAGCAAGAATGCGATACTTTGATAAGGGTTGGGAACTAATGAAGAAA
ATTCAACAGCTACAACCGTCGTTGCTCACCCTTAAGTCATTGAGCATCATGCTATCAAGA
ATAGCAAAATACCAGTCCTATGAAGATACCCTTGAAGCATTTGAGAAGATGGAGCAGCAT
TTATTCCCTGGGAAGAAATTTGGCACCGAAGAGTTCAATATTCTTCTTCGAGCATTTTGC
TCACAAAGGCAGATGAAAGAAGCTCGTTCAGTATTCAACAAACTCCATTCTAGGTTCCCA
CCTGATACCAAGACAATGAATATCTTGCTTTTGGGGTTCAAGGAATCAGGGGATATTACT
GCCGTAGAGTTATTTTACCATGAGATGGTTAAAAGAGGTTTTAAGCTTAATTCTGTAACA
TACAGTATAAGAATTGATGCATACTGCAAGAAAGGTCGCTTTGGTGATGCTTTGAAGCTG
TTTGAAGAAATGGATAGGGTAAATTGCTTGCCTACAGTTGAAACAATAACAACTTTGATT
CATGGAGCAGGGATTGCTCGTAATATAAGTAAAGCTAAGGAACTATTCAATGAACTATTC
AAGAGAAATTTTCAACCAGACACTGGAGCCTATAATGCCCTTTTGAGTTCTCTTACCAAA
TCCAGGGATGTCAAATCTGCAGCAGTCTTAATGGATGAGATGGAAGAGAAAAATATTGAG
TTCGACAATGTAACTTACCACACTATGTTGTGGGGATTGATAAGATCAAATGATGTTGGT
GGTGTCATTGATCTTTACGAAAGGATGGTTGACAAAAATTTCTTGCCCAAGGCACGTACT
GTTGTGATGCTGATGAAATTCTTTTGTGAAAACCAGAGAGTTGATCTGGGTTTGAGCTTA
TGGAATTACCTGATGAATAAAGGGCACTGTCCACACTGCCATTCTTTAGAAATTCTGGTC
ACAGGATTGTGCTCTCGTGGGAGAGTTGAAGAAGCATTTGAGTGCTCTGAGCAAATGTTG
AAGAGGGGTAGGCACATGAGCGAGCTAGTGTTTCAGATGTTGAAGAGGTTTTTCTTACAG
CTGGGAGAGGAGGAAAAGTTACAGAAGCTCTACCAAATGACAAAGAGATTAGAAATGATA
TTGCCTCCTAATGGACAAACTGTTGTTAGTTGCTTGATTTACTTGATTCTACACATAGCT
GAGATATTTCTTTGGAATTTGCGTAACAATGATATTTTTATGATCTTTCCATTTGTTTGG
GTTCAATTTTTTGTTGCCGTTACCTATAGCTGTTTCATGACCACTGAAACTGTCTATCGG
ATTTTTTTCTGCAAAGAGAGACTGTGTTTCTATTGTGTTGTTTAA