Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g063360.3.1
CDS Infomation

ATP-dependent zinc metalloprotease FTSH (AHRD V3.3 *** W9S040_9ROSA)
Sequence

ATGACATCCAATATTCATTTGCTAAAACCCTCTTTCTCTCCTCCTAAAACCCTACCCACA
TACTACTCTTCATCTCCATTCACCGCTTTCAATTTCCACCTAAAACCTCGCCGGAATTGC
CTCTATATTGGTTCAAAGCCCTTCAATGTCCACCTCTGTAAAGCTGCTGCATCCCCTTCC
AGTTCCAGTTCTAACTCTGCTGGTGATGAAACTGAATCAGCTCAGCAGCTGTTTGAGAAA
TTGAAGGAGGCAGAGCGTGAACGGATAAATAATTTAGAGGAGTTTGAAAGGAAGGCAAAT
GTTCAATTAGAGAGGCAGCTTGTGCTGGCTTCAGAATGGAGTAGGAAATTGCTGGCCATG
CAGGGAAAGCTGAAGGGGACAGAGTGGGATCCTGAAAATTCTCATAGAATAGACTACAGT
GAATTCCAAAACCTTCTGAATGCAAACAATGTGCAGTTTATGGAGTATTCAAACTATGGG
CAGACAGTTTCAGTGATTCTGCCATATTACAAGGACGGAAAAACAAATCGTTCAGGAGGG
GACACTAAAAAGGAAATTGTTTTCAAGCGTCATGTCGTTGACCGGATGCCAATAGATAGA
TGGAATGATGTTTGGAGGAAGTTGCATCAACAACTTGTAAATGTTGATGTGTATAATGTG
AATAACATCCCTGCTGAAGTTTATTCTACTATCGCGACAGCAGTTGTGTGGTCTATGCGG
CTGGCATTTTCAGTTCTATTGTACATTTGGATTGATAATAAGATGAGACCAATTTATTCA
AAACTAATACCTTGCGATTTGGGCAGCCCTCCCAAAAAGATAAAAGAGCCACTCAAGCAG
CGTGCCCTTGGTTCATTAGGAAAAAGCCGTGCAAAATTCATATCAGCAGAAGAAAAGACT
GGTATAACTTTTGATGATTTTGCTGGCCAAGAATATATTAAGAGAGAACTTCAAGAGATA
GTTCGAATATTGAGGAATGAAGAAGAGTTTCAAGACAAAGGGATTTATTGCCCAAAAGGT
GTGCTTCTTCATGGTCCTCCTGGAACTGGCAAAACACTTCTGGCAAAAGCTATAGCTGGA
GAAGCAGGATTACCTTTTTTTGCTGCTAACGGTACTGATTTTGTTGAGATGTTTGTTGGT
GTGGCTGCTTCACGTGTGAAGGATCTCTTTTCCAGTGCCAGGTCATTTGCTCCTTCTATT
ATTTTCATTGACGAGATAGACGCAATTGGCAGCAAACGTGGTGGACCAGATATTGGTGGG
GGTGGTGCAGAGAGGGAACAAGGGCTTCTTCAGATACTGACAGAAATGGATGGATTTAAA
GTGTCAACATCACAGGTCTTAGTTATTGGTGCAACCAATAGATTGGATATTCTTGATCCT
GCCCTGCTGCGAAAGGGTCGTTTTGACAAGATTATTAGGGTTGGTTTGCCCTCAAAAGAC
GGTAGATTGGCCATATTGAAGGTGCATGCTCGGAACAAATTTTTTCGGTCAGAAGGGGAA
AAAGACACTCTATTGCAGGAAATTGCTGAGCAAACAGAAGATTTTACTGGAGCTGAACTT
CAAAATATATTGAATGAAGCTGGAATTTTGACCGCAAGGAAAGATTTGGACTATATAGGA
CGGGATGAACTCCTTGAGGCATTGAAGAGGCAAAAAGGCACATTTGAAACGGGTCAAGAA
GATAGTACTGAGGTCCCTGAGGAGTTAACACTAAGACTAGCTTACAGAGAAGCTGCTGTT
GCAGTTCTTGCTTGTTACCTTCCAGATCCCTACCGACCATTCACTGAGACGGACATCAAA
TCTATTCGTAGTCAGCCCAATATGCAATTCGTGGAGATTGGAGGCAGAGTGTTTAAAAGG
AAAGCAGATTATGTGAACTCAATAGTCCGTGCATGTGCTCCCAGAGTAATTGAGGAAGAA
ATGTTTGGAGTTGACAATCTATGCTGGATCTCTGCAAAATCAACTTTAGAAGCTTCCAGG
CTTGCAGAATTTTTGATACTGCAGACAGGGTTGACTGCCTTGGGAAAGGCTTATTACAGA
TACCAGAGAGATCTCTTACCAAATCTCCCTGCTAAAATTGAAGCACTAAGAGATGAGTAC
ATGCGATATGCCGTGGAGAAATGCTTATCTATTCTAAAAGAGAACCACGATGCTGTAGAG
ACAATTACAGATGTGTTACTTGAGAGAGGAGAGATCAAAGCCGATGAAATTTGGAGTATA
TACAAAAGCTCACCTAAAAGTCCTCAGCCTACTGTGAGTCCCATCGATGAATATGGATCC
CTTATATATGCTGGACGGTGGGGAGTCCATGGAGTTTCACTTCCAGGGAGGGTGACGTTT
GCACCTGGAAATGTTGGATTTGCAACTTTTGGTGCACCTCGACCTATGGAGACCCAGATA
GTTAGTGATGAAACATGGAAGCTAATAGATGGCATATGGGATAAAAGGGTCGAGGAAATG
AAAGCTGCTGTATCACTAGAAACTGAAGAAGACGAGGAGAAGCCAAAACTTCTGATGGCC
AGTCATTTCCTATAG

Peptide Sequence

PEP ID

Solyc04g063360.3.1
PEP Infomation

ATP-dependent zinc metalloprotease FTSH (AHRD V3.3 *** W9S040_9ROSA)
Sequence

MTSNIHLLKPSFSPPKTLPTYYSSSPFTAFNFHLKPRRNCLYIGSKPFNVHLCKAAASPS
SSSSNSAGDETESAQQLFEKLKEAERERINNLEEFERKANVQLERQLVLASEWSRKLLAM
QGKLKGTEWDPENSHRIDYSEFQNLLNANNVQFMEYSNYGQTVSVILPYYKDGKTNRSGG
DTKKEIVFKRHVVDRMPIDRWNDVWRKLHQQLVNVDVYNVNNIPAEVYSTIATAVVWSMR
LAFSVLLYIWIDNKMRPIYSKLIPCDLGSPPKKIKEPLKQRALGSLGKSRAKFISAEEKT
GITFDDFAGQEYIKRELQEIVRILRNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAG
EAGLPFFAANGTDFVEMFVGVAASRVKDLFSSARSFAPSIIFIDEIDAIGSKRGGPDIGG
GGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKD
GRLAILKVHARNKFFRSEGEKDTLLQEIAEQTEDFTGAELQNILNEAGILTARKDLDYIG
RDELLEALKRQKGTFETGQEDSTEVPEELTLRLAYREAAVAVLACYLPDPYRPFTETDIK
SIRSQPNMQFVEIGGRVFKRKADYVNSIVRACAPRVIEEEMFGVDNLCWISAKSTLEASR
LAEFLILQTGLTALGKAYYRYQRDLLPNLPAKIEALRDEYMRYAVEKCLSILKENHDAVE
TITDVLLERGEIKADEIWSIYKSSPKSPQPTVSPIDEYGSLIYAGRWGVHGVSLPGRVTF
APGNVGFATFGAPRPMETQIVSDETWKLIDGIWDKRVEEMKAAVSLETEEDEEKPKLLMA
SHFL*

Transcript Sequence

Transcript ID

Solyc04g063360.3.1
Transcript Infomation

ATP-dependent zinc metalloprotease FTSH (AHRD V3.3 *** W9S040_9ROSA)
Sequence

AGAATGATAGCAACTCTCTCTTTTCAGTAGCAGGCGAGGCAAAAAAGACCACAAACACCC
TTTGCATTTCCCTTTTTGAATTGGCCTATCAGAAAGAAAAACGAGTGAATGCGCTACATG
TCTATTATTTTTTTTAAATTACTAATGTTGGCTTAGAGTGAGAATTCAGTCCATACCTTT
ACTTACCCGTTCTCTGTCGACTTTAAGTTCAATCAAAAGCTTAAAAGAAAGACCCAAGAG
ACGGCCTATGTAGTGCATGAGAAATAAACCAAAATAATTAAACTTTAATACAGATATCAA
ATACAAAATTCTAAGTAGGCCTACCAAAAAAAAAAATTAAATTGCTGGCCCAAAACTAAT
CGTAAATATTTTTTCATGAAAATAAAAGATTGAAGATGAAAATGGAGTTGTGTTTCACTT
AGGATATATATTCACACGATTGAGAAGAAGAAAAGATAAGAGAAGAGGACGGATGAGCTA
ATCGAAGAGGATGACATCCAATATTCATTTGCTAAAACCCTCTTTCTCTCCTCCTAAAAC
CCTACCCACATACTACTCTTCATCTCCATTCACCGCTTTCAATTTCCACCTAAAACCTCG
CCGGAATTGCCTCTATATTGGTTCAAAGCCCTTCAATGTCCACCTCTGTAAAGCTGCTGC
ATCCCCTTCCAGTTCCAGTTCTAACTCTGCTGGTGATGAAACTGAATCAGCTCAGCAGCT
GTTTGAGAAATTGAAGGAGGCAGAGCGTGAACGGATAAATAATTTAGAGGAGTTTGAAAG
GAAGGCAAATGTTCAATTAGAGAGGCAGCTTGTGCTGGCTTCAGAATGGAGTAGGAAATT
GCTGGCCATGCAGGGAAAGCTGAAGGGGACAGAGTGGGATCCTGAAAATTCTCATAGAAT
AGACTACAGTGAATTCCAAAACCTTCTGAATGCAAACAATGTGCAGTTTATGGAGTATTC
AAACTATGGGCAGACAGTTTCAGTGATTCTGCCATATTACAAGGACGGAAAAACAAATCG
TTCAGGAGGGGACACTAAAAAGGAAATTGTTTTCAAGCGTCATGTCGTTGACCGGATGCC
AATAGATAGATGGAATGATGTTTGGAGGAAGTTGCATCAACAACTTGTAAATGTTGATGT
GTATAATGTGAATAACATCCCTGCTGAAGTTTATTCTACTATCGCGACAGCAGTTGTGTG
GTCTATGCGGCTGGCATTTTCAGTTCTATTGTACATTTGGATTGATAATAAGATGAGACC
AATTTATTCAAAACTAATACCTTGCGATTTGGGCAGCCCTCCCAAAAAGATAAAAGAGCC
ACTCAAGCAGCGTGCCCTTGGTTCATTAGGAAAAAGCCGTGCAAAATTCATATCAGCAGA
AGAAAAGACTGGTATAACTTTTGATGATTTTGCTGGCCAAGAATATATTAAGAGAGAACT
TCAAGAGATAGTTCGAATATTGAGGAATGAAGAAGAGTTTCAAGACAAAGGGATTTATTG
CCCAAAAGGTGTGCTTCTTCATGGTCCTCCTGGAACTGGCAAAACACTTCTGGCAAAAGC
TATAGCTGGAGAAGCAGGATTACCTTTTTTTGCTGCTAACGGTACTGATTTTGTTGAGAT
GTTTGTTGGTGTGGCTGCTTCACGTGTGAAGGATCTCTTTTCCAGTGCCAGGTCATTTGC
TCCTTCTATTATTTTCATTGACGAGATAGACGCAATTGGCAGCAAACGTGGTGGACCAGA
TATTGGTGGGGGTGGTGCAGAGAGGGAACAAGGGCTTCTTCAGATACTGACAGAAATGGA
TGGATTTAAAGTGTCAACATCACAGGTCTTAGTTATTGGTGCAACCAATAGATTGGATAT
TCTTGATCCTGCCCTGCTGCGAAAGGGTCGTTTTGACAAGATTATTAGGGTTGGTTTGCC
CTCAAAAGACGGTAGATTGGCCATATTGAAGGTGCATGCTCGGAACAAATTTTTTCGGTC
AGAAGGGGAAAAAGACACTCTATTGCAGGAAATTGCTGAGCAAACAGAAGATTTTACTGG
AGCTGAACTTCAAAATATATTGAATGAAGCTGGAATTTTGACCGCAAGGAAAGATTTGGA
CTATATAGGACGGGATGAACTCCTTGAGGCATTGAAGAGGCAAAAAGGCACATTTGAAAC
GGGTCAAGAAGATAGTACTGAGGTCCCTGAGGAGTTAACACTAAGACTAGCTTACAGAGA
AGCTGCTGTTGCAGTTCTTGCTTGTTACCTTCCAGATCCCTACCGACCATTCACTGAGAC
GGACATCAAATCTATTCGTAGTCAGCCCAATATGCAATTCGTGGAGATTGGAGGCAGAGT
GTTTAAAAGGAAAGCAGATTATGTGAACTCAATAGTCCGTGCATGTGCTCCCAGAGTAAT
TGAGGAAGAAATGTTTGGAGTTGACAATCTATGCTGGATCTCTGCAAAATCAACTTTAGA
AGCTTCCAGGCTTGCAGAATTTTTGATACTGCAGACAGGGTTGACTGCCTTGGGAAAGGC
TTATTACAGATACCAGAGAGATCTCTTACCAAATCTCCCTGCTAAAATTGAAGCACTAAG
AGATGAGTACATGCGATATGCCGTGGAGAAATGCTTATCTATTCTAAAAGAGAACCACGA
TGCTGTAGAGACAATTACAGATGTGTTACTTGAGAGAGGAGAGATCAAAGCCGATGAAAT
TTGGAGTATATACAAAAGCTCACCTAAAAGTCCTCAGCCTACTGTGAGTCCCATCGATGA
ATATGGATCCCTTATATATGCTGGACGGTGGGGAGTCCATGGAGTTTCACTTCCAGGGAG
GGTGACGTTTGCACCTGGAAATGTTGGATTTGCAACTTTTGGTGCACCTCGACCTATGGA
GACCCAGATAGTTAGTGATGAAACATGGAAGCTAATAGATGGCATATGGGATAAAAGGGT
CGAGGAAATGAAAGCTGCTGTATCACTAGAAACTGAAGAAGACGAGGAGAAGCCAAAACT
TCTGATGGCCAGTCATTTCCTATAG