Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g056570.3.1
CDS Infomation	Disease resistance protein (TIR-NBS-LRR class), putative (AHRD V3.3 *** Q2HUD1_MEDTR)
Sequence	ATGGATGGATTGGCTGAAACAGGATCTTCTTCTTCTTTGTGGCCATGCACTTATGATGTT TTCTTAAGTTTTAGAGGAGAGGATGTACGGAAGAACTTCGTCGATCATCTATATACAGCT TTGCAGCAAAGAGGAATTCACACTTTCAAAGATGATGAAAAACTTGAAAGAGGGAAATCT ATTTCACCTTCACTTTTCAAAGCTATCGAAGAATCGATGATTTCCATCATCATATTCTCT CAAAACTATGCTGCTTCTTCATGGTGTCTAGATGAGCTTGTTAAGATCACTCAATGCATG AAACTCAGGGGACAGATTGTTCTTCCTGTCTTCTATGACGTGGATCCATCTGTCGTAAGA AAACAAAAGGCAAACGTTGGTGAGTTCTTCGCTAGGCATGAGTTAGATTTCAAAGATGAT GAAGAAAGGGTGAAGAGATGGCGTACTGCTATGACAGAAGCAGCAAATGTATCTGGTTGG GATTTGCCAAATATTGCTAACGGGCACGAATCAAAGTGTATCGAGCAAGTTGTAGAATGT GTCATGGAGATATTAGGTCATACTGCTTCTGATGCTACTGAAAATCTTGTTGGAATACGC TCAAGAATGGGGACAGTGTATTCCTTGTTGAATCTGGAGTCTGGTAAAGTTCAATTCGTT GGAATATGGGGAATGAGCGGAATAGGGAAAACAACTATAGCAAGAGCCATCTACGACAAG ATTTTCCGTTACTTTCAAGGTGCTACTTTCCTTCATGAAGTTGGAGAAACTTCAGCCAAA CATGGTATCCAACATTTGCAGCAGATACTTCTTTCTGAGCTACTTCTGTTAAAAGATCTA AGAATAAACAATGTATTTGAAGGAACCAGCTTGGTAAGAAGACGACTAAATGGGAAACGA GTCCTAATTGTTCTTGATGATGTCAATCATGGAAACCAGTTAGATGCCCTAGCTAAAAGC CATGACTGGTTTGGTGCAGGCAGTATAATCATCATAACAACAAAGGATAAGCAGTTGCTT CGTCAATATAACGTGGACAAAATGTATAAAGTGAGTCTGTTAAACACTGATGAAAGTATT GAACTCCTTAGTTCGTATGCATTCCAGAATCGCCTTCCTAAAAGTGGATATGGAGAGATC ATAGCTGAAGTTGTTCGGTATGCTGGTGGTCTTCCATTAGCTCTTAAAGTTTTGGGTTGC TCTCTGTATGGCGGAGGCATGATTGAATGGAGAGAAACAGTGGAGAGACTAAAACGAATT CCAGAAGGCGAAATTGTAGAAAAACTCAAAGTAAGTTTCAATAGACTAAGTGAGACCGAC CAAAAGATCTTCTTAGATATTGCATGTTTCTTTAAAGGGAAGAAGAAAGGTTCTGTCATT AGAATTCTTCGTAGTTTCAGTTTTACTCCTGTCCTTGGCATAAGAAATCTCATCGAAAAA TCTCTTGTAACTGTTTCAAAAGGTAGGATTGTGATGCATCAGTTGATCCAAGAGATGGGT TGGCATATTGTTCGCAAAGAAGCTTCAAACAATCTTGGCAAGTATACTAGGCTCTGGTCT CCCGATGATATTCTTCATGTACTATCTGAAAATAAGGCCACAGAAGCTGTGGAAGGCATA TGGTTGCACTTACCTATTCCGAAAGACATAAATGTTGGTGCAGAAGCCTTCAAACAAACG TACAACCTGAGGCTGCTCAAGATACACAATGCAAGTGTCTCTGTAGCTCCAGATGATCTT CCTAATAAATTGATATGGCTTCATTGGCATGGCTACCCAATGAAGTCACTTCCAGCAAGT TTTCAAGCAGAAAGGCTTGTTTGTCTGAAAATGCAGTATAGCCGCGTTGTACACTTGTGG AAGGGAGTAAAATTACTACACAAACTGAAGTTTCTCAACCTTAGTCACTCTCAAAAGCTA GTCAGCTGTCCAGATTTCACGGGGGTGCCCAATCTCGAGAAGTTGGTTCTTGAAGATTGT TCGAGTATAATTGAGATCCATCCTTCCGTGGGATATCTCAAAAATCTTGTTCTACTAAAC CTGAAGAACTGCAAGAATCTTAAGAGCCTTCCAAACATTATTCGATTGGATAATCTTGAG ACTTTAATTCTTTCTGGCTGCTTGAAACTCGAAAATTTCCCAGAAATCATGAGTGACATG AATTGCTTATCTGAGGTCTACTTGGAAGCTACAGATGTAAAAGAGTTGCCTTCTTCAATT GAACACCTCACTGGCCTTCGATTGATGAATCTAGGCTACTGCAGGAATCTTACAAATTTA CCAACAACCATAGGCAGATTAAAATCTCTTAGGATTCTTATTCTCTCTGGATGTTCAAAG CTAGAAAAGTTGCCAGAGGAACTGGGACATATAGAAATCTTAGAGGAACTCTATTGCGAC GAAACTGCCATTCAAAGCCCACCTTCATCCATTACACTATTGAAGAACCTTAAGACCTTA TCTTTTCATGGATGTAAAGGCATGGTATCTCAGTCATGGAGTTCACTTTTCTATGCATGG CTTCAGCCAAGAAAACATAATCACAAGCCAACAAGTCTGATGTTTTCTTCCTTTTCTGGT TTATTTTCTTTGAGGAAATTGGATCTTAGTGACTGTTGTATGTTGGATGAAGGAATTCCT AGTGATCTTGGATGTTTGTCTTCTTTGGTTGAGCTAAATCTTAGTGGGAATAATTTTGTG GATATCTCTCAAGCAAGTCTCAACATGCTTCCGCGGCTCAGAATCCTTGAGCTAGTGGGT TGTGAGAGGCTTGAAAGGTTGCCAGAACTTCCAACAACAATTGAGGAAGTTTTTGCAGAT AATTGTACATCCCTGATGACCGATGACATGGGAATATTGACCAACTACAAGATGTTACAG CGAATATCGTTCACTAATTGTGTTGGACTACTGCAGAATCAGCAGACGCGTGACATGGCT ACCTCATTGTGGCTTCACCTATTCAAGAAGTGCATTGTTAAAAGTGGTCACTTTAGCATT TACCTACCTGGAGAACAAGTTCCAGAATGGTTTGGCTACAAACTCAATGGAACTTCAGTT TCACTGCAGCTGCCAAACGATTGGTACAATGATAAATTCATGGGATTTGCCATCTGTGTG GTGTCTGACCAAGAAACAACATGGTTATCAGTTCATGAAGGTTACCTACAGGAAATGCCA GGCATTTCGATTGAGTTTACAATCAAAAGCCACCTACGGAGGAGCACGAGTTGCCTAATG AACATTGGTTTTGTAGGGACAAACAAGAATGTTGCTTCAGATCACACATGCCTTGCCTAT GTGGCATTTGAAGAATACTGGTCAATGTACAAAAACCACTTAGACACCCCAAACAATTGG TATCAAATCGATTTTTCTGCAAACTCATTGAGGAAACATATATTCCTAAAAAGTTGGGGA ATTCGTCTAGTGTACACTGATGACTTACAGAGTTTCACATCTTGA

Peptide Sequence

PEP ID	Solyc04g056570.3.1
PEP Infomation	Disease resistance protein (TIR-NBS-LRR class), putative (AHRD V3.3 *** Q2HUD1_MEDTR)
Sequence	MDGLAETGSSSSLWPCTYDVFLSFRGEDVRKNFVDHLYTALQQRGIHTFKDDEKLERGKS ISPSLFKAIEESMISIIIFSQNYAASSWCLDELVKITQCMKLRGQIVLPVFYDVDPSVVR KQKANVGEFFARHELDFKDDEERVKRWRTAMTEAANVSGWDLPNIANGHESKCIEQVVEC VMEILGHTASDATENLVGIRSRMGTVYSLLNLESGKVQFVGIWGMSGIGKTTIARAIYDK IFRYFQGATFLHEVGETSAKHGIQHLQQILLSELLLLKDLRINNVFEGTSLVRRRLNGKR VLIVLDDVNHGNQLDALAKSHDWFGAGSIIIITTKDKQLLRQYNVDKMYKVSLLNTDESI ELLSSYAFQNRLPKSGYGEIIAEVVRYAGGLPLALKVLGCSLYGGGMIEWRETVERLKRI PEGEIVEKLKVSFNRLSETDQKIFLDIACFFKGKKKGSVIRILRSFSFTPVLGIRNLIEK SLVTVSKGRIVMHQLIQEMGWHIVRKEASNNLGKYTRLWSPDDILHVLSENKATEAVEGI WLHLPIPKDINVGAEAFKQTYNLRLLKIHNASVSVAPDDLPNKLIWLHWHGYPMKSLPAS FQAERLVCLKMQYSRVVHLWKGVKLLHKLKFLNLSHSQKLVSCPDFTGVPNLEKLVLEDC SSIIEIHPSVGYLKNLVLLNLKNCKNLKSLPNIIRLDNLETLILSGCLKLENFPEIMSDM NCLSEVYLEATDVKELPSSIEHLTGLRLMNLGYCRNLTNLPTTIGRLKSLRILILSGCSK LEKLPEELGHIEILEELYCDETAIQSPPSSITLLKNLKTLSFHGCKGMVSQSWSSLFYAW LQPRKHNHKPTSLMFSSFSGLFSLRKLDLSDCCMLDEGIPSDLGCLSSLVELNLSGNNFV DISQASLNMLPRLRILELVGCERLERLPELPTTIEEVFADNCTSLMTDDMGILTNYKMLQ RISFTNCVGLLQNQQTRDMATSLWLHLFKKCIVKSGHFSIYLPGEQVPEWFGYKLNGTSV SLQLPNDWYNDKFMGFAICVVSDQETTWLSVHEGYLQEMPGISIEFTIKSHLRRSTSCLM NIGFVGTNKNVASDHTCLAYVAFEEYWSMYKNHLDTPNNWYQIDFSANSLRKHIFLKSWG IRLVYTDDLQSFTS*

Transcript Sequence

Transcript ID	Solyc04g056570.3.1
Transcript Infomation	Disease resistance protein (TIR-NBS-LRR class), putative (AHRD V3.3 *** Q2HUD1_MEDTR)
Sequence	TACTTGTTCAACTTTATACAAGTTCAATGACTTACTTGTGCACATCCGAAATTGGACTAC ATAGATCTCAGCTGAGGCTGAGTAAATAATAAGATCATACTTATTCTGGACGTCCTGCTG AATCAGATATGAGTCATTAGTTGACTTGAGCAGAAAGAGGAAAATTGAATACTTTGTTGT TCTTATTTGCATATTTTTGGTATCTCAATGGATGGATTGGCTGAAACAGGATCTTCTTCT TCTTTGTGGCCATGCACTTATGATGTTTTCTTAAGTTTTAGAGGAGAGGATGTACGGAAG AACTTCGTCGATCATCTATATACAGCTTTGCAGCAAAGAGGAATTCACACTTTCAAAGAT GATGAAAAACTTGAAAGAGGGAAATCTATTTCACCTTCACTTTTCAAAGCTATCGAAGAA TCGATGATTTCCATCATCATATTCTCTCAAAACTATGCTGCTTCTTCATGGTGTCTAGAT GAGCTTGTTAAGATCACTCAATGCATGAAACTCAGGGGACAGATTGTTCTTCCTGTCTTC TATGACGTGGATCCATCTGTCGTAAGAAAACAAAAGGCAAACGTTGGTGAGTTCTTCGCT AGGCATGAGTTAGATTTCAAAGATGATGAAGAAAGGGTGAAGAGATGGCGTACTGCTATG ACAGAAGCAGCAAATGTATCTGGTTGGGATTTGCCAAATATTGCTAACGGGCACGAATCA AAGTGTATCGAGCAAGTTGTAGAATGTGTCATGGAGATATTAGGTCATACTGCTTCTGAT GCTACTGAAAATCTTGTTGGAATACGCTCAAGAATGGGGACAGTGTATTCCTTGTTGAAT CTGGAGTCTGGTAAAGTTCAATTCGTTGGAATATGGGGAATGAGCGGAATAGGGAAAACA ACTATAGCAAGAGCCATCTACGACAAGATTTTCCGTTACTTTCAAGGTGCTACTTTCCTT CATGAAGTTGGAGAAACTTCAGCCAAACATGGTATCCAACATTTGCAGCAGATACTTCTT TCTGAGCTACTTCTGTTAAAAGATCTAAGAATAAACAATGTATTTGAAGGAACCAGCTTG GTAAGAAGACGACTAAATGGGAAACGAGTCCTAATTGTTCTTGATGATGTCAATCATGGA AACCAGTTAGATGCCCTAGCTAAAAGCCATGACTGGTTTGGTGCAGGCAGTATAATCATC ATAACAACAAAGGATAAGCAGTTGCTTCGTCAATATAACGTGGACAAAATGTATAAAGTG AGTCTGTTAAACACTGATGAAAGTATTGAACTCCTTAGTTCGTATGCATTCCAGAATCGC CTTCCTAAAAGTGGATATGGAGAGATCATAGCTGAAGTTGTTCGGTATGCTGGTGGTCTT CCATTAGCTCTTAAAGTTTTGGGTTGCTCTCTGTATGGCGGAGGCATGATTGAATGGAGA GAAACAGTGGAGAGACTAAAACGAATTCCAGAAGGCGAAATTGTAGAAAAACTCAAAGTA AGTTTCAATAGACTAAGTGAGACCGACCAAAAGATCTTCTTAGATATTGCATGTTTCTTT AAAGGGAAGAAGAAAGGTTCTGTCATTAGAATTCTTCGTAGTTTCAGTTTTACTCCTGTC CTTGGCATAAGAAATCTCATCGAAAAATCTCTTGTAACTGTTTCAAAAGGTAGGATTGTG ATGCATCAGTTGATCCAAGAGATGGGTTGGCATATTGTTCGCAAAGAAGCTTCAAACAAT CTTGGCAAGTATACTAGGCTCTGGTCTCCCGATGATATTCTTCATGTACTATCTGAAAAT AAGGCCACAGAAGCTGTGGAAGGCATATGGTTGCACTTACCTATTCCGAAAGACATAAAT GTTGGTGCAGAAGCCTTCAAACAAACGTACAACCTGAGGCTGCTCAAGATACACAATGCA AGTGTCTCTGTAGCTCCAGATGATCTTCCTAATAAATTGATATGGCTTCATTGGCATGGC TACCCAATGAAGTCACTTCCAGCAAGTTTTCAAGCAGAAAGGCTTGTTTGTCTGAAAATG CAGTATAGCCGCGTTGTACACTTGTGGAAGGGAGTAAAATTACTACACAAACTGAAGTTT CTCAACCTTAGTCACTCTCAAAAGCTAGTCAGCTGTCCAGATTTCACGGGGGTGCCCAAT CTCGAGAAGTTGGTTCTTGAAGATTGTTCGAGTATAATTGAGATCCATCCTTCCGTGGGA TATCTCAAAAATCTTGTTCTACTAAACCTGAAGAACTGCAAGAATCTTAAGAGCCTTCCA AACATTATTCGATTGGATAATCTTGAGACTTTAATTCTTTCTGGCTGCTTGAAACTCGAA AATTTCCCAGAAATCATGAGTGACATGAATTGCTTATCTGAGGTCTACTTGGAAGCTACA GATGTAAAAGAGTTGCCTTCTTCAATTGAACACCTCACTGGCCTTCGATTGATGAATCTA GGCTACTGCAGGAATCTTACAAATTTACCAACAACCATAGGCAGATTAAAATCTCTTAGG ATTCTTATTCTCTCTGGATGTTCAAAGCTAGAAAAGTTGCCAGAGGAACTGGGACATATA GAAATCTTAGAGGAACTCTATTGCGACGAAACTGCCATTCAAAGCCCACCTTCATCCATT ACACTATTGAAGAACCTTAAGACCTTATCTTTTCATGGATGTAAAGGCATGGTATCTCAG TCATGGAGTTCACTTTTCTATGCATGGCTTCAGCCAAGAAAACATAATCACAAGCCAACA AGTCTGATGTTTTCTTCCTTTTCTGGTTTATTTTCTTTGAGGAAATTGGATCTTAGTGAC TGTTGTATGTTGGATGAAGGAATTCCTAGTGATCTTGGATGTTTGTCTTCTTTGGTTGAG CTAAATCTTAGTGGGAATAATTTTGTGGATATCTCTCAAGCAAGTCTCAACATGCTTCCG CGGCTCAGAATCCTTGAGCTAGTGGGTTGTGAGAGGCTTGAAAGGTTGCCAGAACTTCCA ACAACAATTGAGGAAGTTTTTGCAGATAATTGTACATCCCTGATGACCGATGACATGGGA ATATTGACCAACTACAAGATGTTACAGCGAATATCGTTCACTAATTGTGTTGGACTACTG CAGAATCAGCAGACGCGTGACATGGCTACCTCATTGTGGCTTCACCTATTCAAGAAGTGC ATTGTTAAAAGTGGTCACTTTAGCATTTACCTACCTGGAGAACAAGTTCCAGAATGGTTT GGCTACAAACTCAATGGAACTTCAGTTTCACTGCAGCTGCCAAACGATTGGTACAATGAT AAATTCATGGGATTTGCCATCTGTGTGGTGTCTGACCAAGAAACAACATGGTTATCAGTT CATGAAGGTTACCTACAGGAAATGCCAGGCATTTCGATTGAGTTTACAATCAAAAGCCAC CTACGGAGGAGCACGAGTTGCCTAATGAACATTGGTTTTGTAGGGACAAACAAGAATGTT GCTTCAGATCACACATGCCTTGCCTATGTGGCATTTGAAGAATACTGGTCAATGTACAAA AACCACTTAGACACCCCAAACAATTGGTATCAAATCGATTTTTCTGCAAACTCATTGAGG AAACATATATTCCTAAAAAGTTGGGGAATTCGTCTAGTGTACACTGATGACTTACAGAGT TTCACATCTTGAGCGATTTCCAGATGAGGTGTGTTCTCTCTGCTTTATATGCATGCCTGG CTTTTGTAAGTATTTTGAAAATAATAAAGCAAATGTTATACTAAAACATCTCAACCCCAT ATATTAACAAAGTGCAAACGTTGATCAAAGAGATACGAACATAATCAGCAACTTGAACCA GAAAAAAGGACTGCATTACCACACATTATTAATCAACATAACAATGATGGAAAAACACAC AATCTCGATATCTCTTTGATAAGGTACACACAATCTTGGTATATATGCGAAAGAAAAGAA AGCTAGCAACCAAGACAGGAGAGTTGGTTTTTACAAAAATTCCACTTTTACCAACACTAG GAAGAGAATGGATGATTCCCAGACACTCTAATATAGCTGGGGCCACCTCTCCAGTCTACA ACAAATATAAAATGCCCCTATTTTTTTTCCCTCCCAGTAGATAGATATGTGAGACCTTAA AATGGATGGAACTAAATAAAAATTGAAAAATAACCGAAAGAAATAAATCCAAACTTGGAA ATCTCACCCTCTGTTGCTTCTTTGAGTTCGATTCCAGACAGTTTAATTCTCGTCCTTGTC AGGCACAAACCTTGGCAGTGTCAATAATGTGTTCAGCCGGGAAACCCCTTCCAGTGCAGA CCATTCCGCCCCCACCTCTGAGAGCAGTTCCTCATGTTCTGATGCTTCCTCTATCTCTTC TTCTGAAACTTCAACTTCTCGAACAGTTCCAGAACGAGTAAATGCAGTTGGACCTGAGGC ATCACCTGTCTTGGCACCAACTTCATTTGCTTTCATTGAGACAGTCTTGTCACTGTCTTC TGTATTGGAAGCAGTGGACAAGTTGTTTGAGTTTGAATCAAGAAAAAGGCAAACAACTGC ACAATCATCAACTTTAGAAGTAGGGTATTTTGTCCTCCAGGCTCGAACAGCTGATTCAAC TAGCGATCGAGCTG