Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g055180.3.1
CDS Infomation

(DB215) meloidogyne-induced giant cell protein
Sequence

ATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAG
GAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTA
TCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCA
CCACCTTTGCCTGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAG
GGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATAT
TCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAG
CAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAA
GGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGACTA
GGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGA
AGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCT
CTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGA
ATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATAC
AGTACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCT
GGCATCAGTCTGCTGGTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGAT
GCACCTTTAAAGCCAACAACAAAGAGAAGATATCAGGGTACAAACAATTCATTTGTTTTC
TCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAGGTGTCAATCGCTATTTTACT
GTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGGCCATTTTGCTCTCTACTTAGAC
GGGGATCTGCTAACAGGTTCAAGTGCAACATCAGAAACTTATGGAAATTCTTGTTTGGCA
CATACTGAAGACTTTGAAGTTAAGGAAGTTGAGTTATGGGGCTTTGTATATGCTTCCAAG
TATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACCTGGAATTTGCCGCTGGTAA

Peptide Sequence

PEP ID

Solyc04g055180.3.1
PEP Infomation

(DB215) meloidogyne-induced giant cell protein
Sequence

MGSENQQQFEENLLHNHNHQEQQQQQRKNRSLRSKAAHFVSDVATVILNPISDKPLKPRP
PPLPEDGSDSDGSKHESNAEGDATDLVDGPDTSSFSAFLYSLLSTTGSESKPNTIGKYDK
QDDRDESIPELTMREPSRRKGILSRGKHSLGRALHQVARLGGFRNQGSAKGSSDMVFDDG
SNSKVSGDNQIPLEDMNKKPLLNNLPGTSEPSVLLTEKARISLYAALPVLVQDRKWVLLY
STWKNGISLSTLYRRSLLWPGISLLVVGDHNGAVFGGLVDAPLKPTTKRRYQGTNNSFVF
SNVSGQPVIFRPTGVNRYFTVCSTEYLALGGGGHFALYLDGDLLTGSSATSETYGNSCLA
HTEDFEVKEVELWGFVYASKYEEMVSILRTETPGICRW*

Transcript Sequence

Transcript ID

Solyc04g055180.3.1
Transcript Infomation

(DB215) meloidogyne-induced giant cell protein
Sequence

AAATGAAGTACAATGTACAATTCGAATATGCAAGTACTAGGAACCGATGGAAATATAAAC
ACACATTTAAAATGAAAAAAAAAAAAACCAACATCAACGACGACTTCACTGGGGATCGAA
CCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGAAGTCTTTACGT
TTGAACCTGTTTATAGTTTAGTAATAAACATTAATTTGCATTTTGCAGAATTTGATGATT
ATCCATGTCTAACGACTGTCCCTTCCAACACACTCCTTTTCTACTTTCTCCTAATATTCC
ACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTT
TTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATAC
TACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCT
TCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAG
GAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGA
TAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGAAGATGGATCTGATTCTGACGGAAG
TAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATC
TTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAA
CACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAAT
GAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGC
TCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTC
TGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTT
GGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGT
TCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGA
CAGGAAGTGGGTCTTGTTATACAGTACATGGAAGAATGGAATATCACTCTCGACTTTATA
CAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTGGTTGTGGGGGACCATAATGGTGC
TGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAGGG
TACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCAC
AGGTGTCAATCGCTATTTTACTGTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGG
CCATTTTGCTCTCTACTTAGACGGGGATCTGCTAACAGGTTCAAGTGCAACATCAGAAAC
TTATGGAAATTCTTGTTTGGCACATACTGAAGACTTTGAAGTTAAGGAAGTTGAGTTATG
GGGCTTTGTATATGCTTCCAAGTATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACC
TGGAATTTGCCGCTGGTAA