Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g054270.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T1C7_RICCO)
Sequence

ATGACGACTCTGCAATTTTCGTCATCCAGTTCAGTTCAACTTCCCTCCTCAACTACTACG
ACTACGCCATGGTTAAATTTACAGAAGAAGAGACCCCTTTACTCTATCGTTCGCTGTGTG
TCGACCCGACCCGGTGGGAGGAAGTCGGGTTACGGGTCATCATCATCTGAGGCGCAGGAG
CTGGTGACTTTGGTTATGAGGAATTTCAGTGATAAAAAGCCATTAGTGAGCACTTTGGAC
AAGTATGTTAAGTTGGTGAGGACTGAGCATTGTTTCTTGCTCTTTGAACAACTGGGAAAG
ACTGATAATTGGCTTCAATGCCTTGAGGTTTTCAGATGGATGCAAAAACAACGGTGGTAT
ATAGCGGATAATGGGGTTTATTCGAAATTGATATCAGTAATGGGGAAGAAAGGGCAGATC
AGAATGGCAATGTGGCTGTTCTCCGAGATGCGTAATAGTGGGTGCCGTCCAGATACCTCA
GTGTACAATGCAGTAATTTCGGCTCATCTCCACTCTCGAGATAAATCCAAGGCCTTGACA
AAGGCTATGGGTTACTTTGAGAAGATGAAGGAAATGGAGCGTTGTAGTCCAAGTATTGTT
ACATACAACATCCTTTTGAGAGCTTTTGCTCAGGCAAAAAATGTTGAGCAGGTAGATGCT
TTGTTGAAAGATCTGGACGAGAGCATTGTAACTCCTGATATATTCACATTTAACGGTCTA
ATGGATGCCTATGGGAAAAATGGAATGATCAACGAAATGGAGCACGTTCTCTCTCGAATG
AAGAGTAATAAGCTGAAACCAGATATCATTACTTTCAATATATTGATTGATTCATATGGG
AAGAAGCAGGACTTTCAGAAAATGGAACAAGTTTTTAAAAGCTTGCTTCAATCAAAGGAA
AAACCTACCATTCCTACTTTTAACTCAATGATAACAAACTATGGAAAAGCACGACTCAGA
GAAAAGTCTGAGTTAGTTCTTGAGAAGATGATTGACTTAGGTTATAAACCAAGTTACATC
ACGTATGAGTGCCTCATTGTGATGTATGGGCATTGTGACTGTGTCTCGAAAGCAAGAGAA
CTATTTGATAGAGTGATGGAATCTGAGAAGGAGAAGAAGGCTTCAACACTGAACTCAATG
CTTGATGCCTATTGCATGAATGGTTTACCCATGGAAGCTCACCTTCTCTTTGAGAGTATT
CATTCAGCCAAAGCTTTCCCCATAGACTCATCAACCTATAAACTTCTATATAAGGCCTAC
ACTAAAGCCGACATGAAGGAACTTGTACAGAAACTGCTGACCTATATGGATGAAGATGGG
ATCATCCCCAACAAAAAGTTCTTTCTTGATGCTTTGGGGGCATTTGGGTCTGCACCAACA
AATCGAAGGGCAGTTGGTGATAATAAAGGATTGAGCAAGCACAAGGGTCATAAGTAA

Peptide Sequence

PEP ID

Solyc04g054270.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T1C7_RICCO)
Sequence

MTTLQFSSSSSVQLPSSTTTTTPWLNLQKKRPLYSIVRCVSTRPGGRKSGYGSSSSEAQE
LVTLVMRNFSDKKPLVSTLDKYVKLVRTEHCFLLFEQLGKTDNWLQCLEVFRWMQKQRWY
IADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNAVISAHLHSRDKSKALT
KAMGYFEKMKEMERCSPSIVTYNILLRAFAQAKNVEQVDALLKDLDESIVTPDIFTFNGL
MDAYGKNGMINEMEHVLSRMKSNKLKPDIITFNILIDSYGKKQDFQKMEQVFKSLLQSKE
KPTIPTFNSMITNYGKARLREKSELVLEKMIDLGYKPSYITYECLIVMYGHCDCVSKARE
LFDRVMESEKEKKASTLNSMLDAYCMNGLPMEAHLLFESIHSAKAFPIDSSTYKLLYKAY
TKADMKELVQKLLTYMDEDGIIPNKKFFLDALGAFGSAPTNRRAVGDNKGLSKHKGHK*

Transcript Sequence

Transcript ID

Solyc04g054270.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T1C7_RICCO)
Sequence

TAGCCTTCAGGGGTAAGTCTGTCATTTTCATTAACATCATCCCTTTCAGTAGAATCCCCC
CACAGCTTCTCTGTAATAGCAACAATGACGACTCTGCAATTTTCGTCATCCAGTTCAGTT
CAACTTCCCTCCTCAACTACTACGACTACGCCATGGTTAAATTTACAGAAGAAGAGACCC
CTTTACTCTATCGTTCGCTGTGTGTCGACCCGACCCGGTGGGAGGAAGTCGGGTTACGGG
TCATCATCATCTGAGGCGCAGGAGCTGGTGACTTTGGTTATGAGGAATTTCAGTGATAAA
AAGCCATTAGTGAGCACTTTGGACAAGTATGTTAAGTTGGTGAGGACTGAGCATTGTTTC
TTGCTCTTTGAACAACTGGGAAAGACTGATAATTGGCTTCAATGCCTTGAGGTTTTCAGA
TGGATGCAAAAACAACGGTGGTATATAGCGGATAATGGGGTTTATTCGAAATTGATATCA
GTAATGGGGAAGAAAGGGCAGATCAGAATGGCAATGTGGCTGTTCTCCGAGATGCGTAAT
AGTGGGTGCCGTCCAGATACCTCAGTGTACAATGCAGTAATTTCGGCTCATCTCCACTCT
CGAGATAAATCCAAGGCCTTGACAAAGGCTATGGGTTACTTTGAGAAGATGAAGGAAATG
GAGCGTTGTAGTCCAAGTATTGTTACATACAACATCCTTTTGAGAGCTTTTGCTCAGGCA
AAAAATGTTGAGCAGGTAGATGCTTTGTTGAAAGATCTGGACGAGAGCATTGTAACTCCT
GATATATTCACATTTAACGGTCTAATGGATGCCTATGGGAAAAATGGAATGATCAACGAA
ATGGAGCACGTTCTCTCTCGAATGAAGAGTAATAAGCTGAAACCAGATATCATTACTTTC
AATATATTGATTGATTCATATGGGAAGAAGCAGGACTTTCAGAAAATGGAACAAGTTTTT
AAAAGCTTGCTTCAATCAAAGGAAAAACCTACCATTCCTACTTTTAACTCAATGATAACA
AACTATGGAAAAGCACGACTCAGAGAAAAGTCTGAGTTAGTTCTTGAGAAGATGATTGAC
TTAGGTTATAAACCAAGTTACATCACGTATGAGTGCCTCATTGTGATGTATGGGCATTGT
GACTGTGTCTCGAAAGCAAGAGAACTATTTGATAGAGTGATGGAATCTGAGAAGGAGAAG
AAGGCTTCAACACTGAACTCAATGCTTGATGCCTATTGCATGAATGGTTTACCCATGGAA
GCTCACCTTCTCTTTGAGAGTATTCATTCAGCCAAAGCTTTCCCCATAGACTCATCAACC
TATAAACTTCTATATAAGGCCTACACTAAAGCCGACATGAAGGAACTTGTACAGAAACTG
CTGACCTATATGGATGAAGATGGGATCATCCCCAACAAAAAGTTCTTTCTTGATGCTTTG
GGGGCATTTGGGTCTGCACCAACAAATCGAAGGGCAGTTGGTGATAATAAAGGATTGAGC
AAGCACAAGGGTCATAAGTAAAATGAAAAAAGAAAGTGACTTGGAGTTAGAAAGGTGGTC
AATGCACTCATTCTCAAACAAAATGAGATTCAAGATGAAGTTTCTTTTGTGATACACATT
GAGTGGCTCAGTAACAATTTACCGAACCGCAAGGACAATTTTGGTCTCCCAGATTCAATA
TAAAACATGGTACATTCATATTGTGAACCTCATCACCTATTTCTTCAGAGAAAAGTGGTG
CTTGATACACTCTAGTAGCTAGAGGGTGGTTCATTCAAATATTGGCCTACAAGTTCTCTT
GTTTGCATCTCTAGATTCTCTAACTTCTTCGTTGCAGCAATGTTATTGTGTCGCAAACAA
TAAGAGAAGGGAGATTGCATATCCAATTTTTTCACTATTTATTTTTCTCATCAATTGTAC
AAAATGCATCAATTCTAACTCTTTGACACTTTGGAAGGGTGGTTTTTGCTTGCAAATGGC
AAAGGGAGATAGTTAATGATAAGAAGAAGAAGAAGAAAAAATGAAGACTTGCCTGTGGGC
AAAATTAACTACACCATTTGGATGGAATGACCTAATGTGATATATATACAAATATTATTT
CACCATGGAAGGTGGAAGGTGACTTCAATGCAATA